View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_high_2 (Length: 598)
Name: NF7689_high_2
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 10 - 584
Target Start/End: Complemental strand, 50243643 - 50243067
Alignment:
| Q |
10 |
cacacacgcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243643 |
cacacacgcatcaatcctcaattttccattcagcttaagaaagaaaaataaaatccaacctgcaacgaaaatagctatgacaataagaagctcctcaaaa |
50243544 |
T |
|
| Q |
110 |
gctccaccaactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243543 |
gctccaccaactaaaactgataatcgtgcaatccctatagcaagcactcctgctgaaattgttcccaaagcacgattgaaccctttgttaagggttgcac |
50243444 |
T |
|
| Q |
210 |
ctaatctcagaaagnnnnnnnngttaactttttcattaaacaaagacatatttcaaaacnnnnnnnnngaaa----ttcacatagtatttcgttgtctgt |
305 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
50243443 |
ctaatctcagaaagaaaaaaaagttaactttttcattaaacaaagacat--ttcaaaaaaaaaaaaaagaaagaaattcacatagtatttcgttgtctgt |
50243346 |
T |
|
| Q |
306 |
cacaacaataataataagtaacaactatatcgccccgacacttgagattgaaagcatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaa |
405 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50243345 |
cacaacaataataataagtaacaactatatcggcccgacacttgagattgaaaacatgttcaatgtctaacatgtgtaggtgtatgtgacattggcacaa |
50243246 |
T |
|
| Q |
406 |
caccgacatagtcattttatattggtagttgaatagaatagattcctacctatgctgaattcgaaaacaacgacaacagtgagaatagcccaaatagagt |
505 |
Q |
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| T |
50243245 |
caccgacatagtcattttatattggtagttgaatagaatagattcctacctatgctgaattcgaaaacaacgacaacagtgagaatagcccaaatagagt |
50243146 |
T |
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| Q |
506 |
acttgctaagttgtttttccttaatgtaaatgaaaagagaaacaagagccaaacttaaaccagctttcatggcaaaaac |
584 |
Q |
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| T |
50243145 |
acttgctaagttgtttttccttaatgtaaatgaaaagagaaacaagagccaaacttaaaccagctttcatggcaaaaac |
50243067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 43816826 - 43816879
Alignment:
| Q |
452 |
tacctatgctgaattcgaaaacaacgacaacagtgagaatagcccaaatagagt |
505 |
Q |
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| T |
43816826 |
tacctatactgaattcaaagactacgacaacagttagaatagcccaaacagagt |
43816879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 505
Target Start/End: Original strand, 43831730 - 43831783
Alignment:
| Q |
452 |
tacctatgctgaattcgaaaacaacgacaacagtgagaatagcccaaatagagt |
505 |
Q |
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||||||| |||||||| || ||||| ||||| |||||||||||||||| ||||| |
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| T |
43831730 |
tacctatactgaattcaaagacaactacaacggtgagaatagcccaaacagagt |
43831783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 378
Target Start/End: Original strand, 3963719 - 3963755
Alignment:
| Q |
342 |
gacacttgagattgaaagcatgttcaatgtctaacat |
378 |
Q |
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| T |
3963719 |
gacactttagattgaaggcatgttcaatgtctaacat |
3963755 |
T |
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