View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_high_22 (Length: 325)
Name: NF7689_high_22
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 23 - 196
Target Start/End: Complemental strand, 44878301 - 44878130
Alignment:
| Q |
23 |
tgactccctccttatttgactctatggagagaaaaatgaacacacgcagtgagaaggacactgacattttggcattgcattgcttgatcattgagaagaa |
122 |
Q |
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| T |
44878301 |
tgactccctccttatttgactctatggaga--aaaatgaacacacgcagtgagaaggacactgacattttggcattgcattgcttgatcattgagaagaa |
44878204 |
T |
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| Q |
123 |
cttggcaaatgttccaagcaatagctaacaacaagttagacattttggtctttccttcagtgacgtgtatgcca |
196 |
Q |
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| T |
44878203 |
cttggcaaatgttccaagcaatagctaacaacaagttagacattttggtctttccttcagtgacgtgtatgcca |
44878130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 44878054 - 44878018
Alignment:
| Q |
272 |
aacaacaacttaaccataatcacttaccatggttaat |
308 |
Q |
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| T |
44878054 |
aacaacaacttaaccataatcacttaccatggttaat |
44878018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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