View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7689_high_24 (Length: 282)

Name: NF7689_high_24
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7689_high_24
NF7689_high_24
[»] chr1 (8 HSPs)
chr1 (19-256)||(6514407-6514644)
chr1 (80-256)||(6510104-6510280)
chr1 (80-258)||(6497118-6497296)
chr1 (98-256)||(6502468-6502626)
chr1 (125-252)||(6525868-6525995)
chr1 (141-252)||(47775666-47775777)
chr1 (141-252)||(47771514-47771625)
chr1 (22-73)||(6497051-6497102)
[»] scaffold0341 (2 HSPs)
scaffold0341 (80-256)||(4128-4304)
scaffold0341 (80-256)||(11784-11960)
[»] chr5 (1 HSPs)
chr5 (148-223)||(28843788-28843863)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 6514407 - 6514644
Alignment:
Q  19 agccccattgacagattcttgagcagaactatgacctgacgatttcatatcttgaggccctatatgaaatgcaggttgcaaaggaattgggagagtaaca 118  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6514407 agccccattgactgattcttgagcagaactatgacctgacgatttcatatcttgaggccctatatgaaatgcaggttgcaaaggaattgggagagtaaca 6514506  T
Q  119 gaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaatacaaagtaatccaatatggatacatctcattatct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6514507 gaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaacacaaagtaatccaatatggatacatctcattatct 6514606  T
Q  219 catttagtgactcattgtttaatgttggatctatgata 256  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6514607 catttagtgagtcattgtttaatgttggatctatgata 6514644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 6510104 - 6510280
Alignment:
Q  80 atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctctt 179  Q
    |||||||||||||||| |||||| ||||||||||||||||||   ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  6510104 atatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctctt 6510203  T
Q  180 gaatacaaagtaatccaatatggatacatctcattatctcatttagtgactcattgtttaatgttggatctatgata 256  Q
    ||| |||||||||||||||||| |||||||| |  || |||||| |||| ||||||||||| || | ||||||||||    
T  6510204 gaacacaaagtaatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgata 6510280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 80 - 258
Target Start/End: Original strand, 6497118 - 6497296
Alignment:
Q  80 atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctctt 179  Q
    |||||||||||||||| |||||| |||||||||||||| |||   ||||| ||| ||||||| |||| ||||||| |||| |||||||||||||||||||    
T  6497118 atatgaaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattctctt 6497217  T
Q  180 gaatacaaagtaatccaatatggatacatctcattatctcatttagtgactcattgtttaatgttggatctatgatact 258  Q
    ||| |||||||||||||||||| ||||||||||  || |||||| |||| ||||||||||| || ||||||||||||||    
T  6497218 gaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatact 6497296  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 256
Target Start/End: Original strand, 6502468 - 6502626
Alignment:
Q  98 aaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaatacaaagtaatccaa 197  Q
    ||||| ||||| |||||||||||   |||||||||| ||||||||| ||||||||||||||||||  |  ||| ||||||||||| ||||||||||||||    
T  6502468 aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaa 6502567  T
Q  198 tatggatacatctcattatctcatttagtgactcattgtttaatgttggatctatgata 256  Q
    ||||||||||||| | ||| |||||| |||| |||||||||||||| |  |||||||||    
T  6502568 tatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgata 6502626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 252
Target Start/End: Complemental strand, 6525995 - 6525868
Alignment:
Q  125 ctattaagcgtcactacaacagaagccatggttggtctgctagctacattctcttgaatacaaagtaatccaatatggatacatctcattatctcattta 224  Q
    ||||||||| | | ||||| ||||||||| ||||| ||||||||| |||| ||||||| ||||||||| ||||| ||||| ||||||||||| || || |    
T  6525995 ctattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcatctcattatttcgttca 6525896  T
Q  225 gtgactcattgtttaatgttggatctat 252  Q
     ||| |||||||||||||| ||||||||    
T  6525895 ctgaatcattgtttaatgtgggatctat 6525868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 47775777 - 47775666
Alignment:
Q  141 caacagaagccatggttggtctgctagctacattctcttgaatacaaagtaatccaatatggatacatctcattatctcatttagtgactcattgtttaa 240  Q
    |||||| ||||||||||||||||  | ||||||| ||||||| |||||||||  |||||||||||||||||||||| ||||||  |||   |||||||||    
T  47775777 caacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaatatggatacatctcattatttcatttgctgaaatattgtttaa 47775678  T
Q  241 tgttggatctat 252  Q
    || |||||||||    
T  47775677 tgctggatctat 47775666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 252
Target Start/End: Complemental strand, 47771625 - 47771514
Alignment:
Q  141 caacagaagccatggttggtctgctagctacattctcttgaatacaaagtaatccaatatggatacatctcattatctcatttagtgactcattgtttaa 240  Q
    |||||| ||||||||||||||||  | ||||||| ||||||| ||||||||| ||||||||||| ||||||||||| ||||||  |||   |||||||||    
T  47771625 caacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaatatggatgcatctcattatttcatttgctgaaatattgtttaa 47771526  T
Q  241 tgttggatctat 252  Q
    || || ||||||    
T  47771525 tgctgcatctat 47771514  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 6497051 - 6497102
Alignment:
Q  22 cccattgacagattcttgagcagaactatgacctgacgatttcatatcttga 73  Q
    ||||||||| ||||||||||| |||||||||||  | |||||||||||||||    
T  6497051 cccattgactgattcttgagctgaactatgaccccatgatttcatatcttga 6497102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 4128 - 4304
Alignment:
Q  80 atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctctt 179  Q
    |||||||||||||||| |||||| ||||||||||||||||||   ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  4128 atatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctctt 4227  T
Q  180 gaatacaaagtaatccaatatggatacatctcattatctcatttagtgactcattgtttaatgttggatctatgata 256  Q
    ||| ||||||||||||||||||||||||||| | ||| |||||| |||| |||||||||||||| |  |||||||||    
T  4228 gaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgata 4304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 11784 - 11960
Alignment:
Q  80 atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctctt 179  Q
    |||||||||||||||| |||||| ||||||||||||||||||   ||||||||| |||||||||||||||||||| |||| |||||||||||||||||||    
T  11784 atatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctctt 11883  T
Q  180 gaatacaaagtaatccaatatggatacatctcattatctcatttagtgactcattgtttaatgttggatctatgata 256  Q
    ||| ||||||||||||||||||||||||||| | ||| |||||| |||| |||||||||||||| |  |||||||||    
T  11884 gaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgata 11960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 28843788 - 28843863
Alignment:
Q  148 agccatggttggtctgctagctacattctcttgaatacaaagtaatccaatatggatacatctcattatctcattt 223  Q
    |||||||||| |||| ||||||||||| ||||| | ||||||||| |||||||| || |||||||| || ||||||    
T  28843788 agccatggttcgtcttctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcattt 28843863  T

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