View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7689_high_25 (Length: 282)
Name: NF7689_high_25
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_25 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 10 - 263
Target Start/End: Complemental strand, 27793246 - 27792995
Alignment:
| Q |
10 |
attattctatttcataacaaccacgaccaagctacaacaagccaaaacttatctaactttctaactcagtctccttttaactaaagtaaaacctgcatgt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27793246 |
attattctatttcataacaaccacgaccaagctacaacaagccaaaacttatctaactttctaactcagtctccttttaactaaagtaaaacctgcatgt |
27793147 |
T |
|
| Q |
110 |
tgcgaaaaatgatcaaactccactactatgatattgatacatattccatcaaatcccaaccaactctaaactattcaccacacatttattagataatgga |
209 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27793146 |
tgcgaaaaatgatcaaactccactactgtgatattgatac--attccatcaaatcccaaccaactctaaactattcaccacacatttattagagaatgga |
27793049 |
T |
|
| Q |
210 |
cgtgggaagaagaaataattgcaactttcattttgactaaaacaaaatacggat |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27793048 |
cgtgggaagaagaaataattgcaactttcattttgactaaaacaaaatacggat |
27792995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University