View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_high_31 (Length: 250)
Name: NF7689_high_31
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_high_31 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 42677431 - 42677211
Alignment:
| Q |
18 |
attttgaagataatctaataattaannnnnnnnctataagttataaaactgattttctaaatattttatctccacgtataaaataatatttttcaagaaa |
117 |
Q |
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| T |
42677431 |
attttgaagataatctaataattaattttttttctataagttataaaactgattttctaaatattttatctccacgtataaaataatatttttcaagaaa |
42677332 |
T |
|
| Q |
118 |
aataatatgaaacaaaaaccataattttaccttattcttcatcttttggacccttgnnnnnnnngaatcatcgggattattttctagataactctttaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
42677331 |
aataatatgaaacaaaaaccataattttaccttattcttcatcttttggacccttatcttttttgaatcatcgggattattttctagataacactttaac |
42677232 |
T |
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| Q |
218 |
tcgttatcgttcatcgtctct |
238 |
Q |
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||||||||||||||||||||| |
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| T |
42677231 |
tcgttatcgttcatcgtctct |
42677211 |
T |
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