View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7689_high_35 (Length: 227)

Name: NF7689_high_35
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7689_high_35
NF7689_high_35
[»] chr5 (21 HSPs)
chr5 (20-199)||(22297666-22297845)
chr5 (118-203)||(22297931-22298016)
chr5 (116-203)||(25906126-25906213)
chr5 (110-196)||(3935959-3936045)
chr5 (119-200)||(29673710-29673791)
chr5 (116-203)||(20510464-20510551)
chr5 (116-203)||(6843082-6843169)
chr5 (116-203)||(29673291-29673377)
chr5 (116-203)||(13657718-13657805)
chr5 (120-203)||(17047859-17047942)
chr5 (116-203)||(38298694-38298781)
chr5 (115-165)||(2846572-2846622)
chr5 (117-165)||(2858411-2858459)
chr5 (119-203)||(13657552-13657636)
chr5 (116-200)||(24490694-24490777)
chr5 (140-199)||(20510361-20510420)
chr5 (116-193)||(5161081-5161157)
chr5 (140-193)||(12272526-12272579)
chr5 (110-195)||(38900217-38900301)
chr5 (114-146)||(36737006-36737038)
chr5 (115-199)||(38299117-38299201)
[»] chr3 (16 HSPs)
chr3 (116-203)||(32618955-32619042)
chr3 (117-203)||(30430271-30430357)
chr3 (116-195)||(30172071-30172150)
chr3 (116-203)||(6931109-6931196)
chr3 (140-203)||(34502626-34502689)
chr3 (116-192)||(43907899-43907974)
chr3 (116-203)||(4304143-4304230)
chr3 (116-194)||(4304325-4304403)
chr3 (117-203)||(30173621-30173707)
chr3 (115-191)||(25799071-25799147)
chr3 (151-199)||(44094187-44094235)
chr3 (110-165)||(19279894-19279949)
chr3 (168-199)||(34396911-34396942)
chr3 (141-200)||(45405072-45405131)
chr3 (118-200)||(2928096-2928178)
chr3 (116-200)||(28725683-28725769)
[»] chr7 (20 HSPs)
chr7 (119-203)||(31198302-31198385)
chr7 (118-203)||(23797213-23797298)
chr7 (118-203)||(6036550-6036635)
chr7 (119-200)||(7760769-7760850)
chr7 (119-203)||(31172344-31172428)
chr7 (115-203)||(31198467-31198554)
chr7 (115-203)||(37081263-37081350)
chr7 (114-203)||(29635233-29635321)
chr7 (116-203)||(19105423-19105510)
chr7 (116-203)||(35054445-35054532)
chr7 (117-203)||(9686454-9686540)
chr7 (118-200)||(29635675-29635757)
chr7 (116-200)||(3555365-3555448)
chr7 (116-200)||(7760608-7760692)
chr7 (115-203)||(12821178-12821266)
chr7 (116-202)||(19105256-19105341)
chr7 (140-202)||(20165011-20165073)
chr7 (131-192)||(8104649-8104710)
chr7 (118-203)||(21657468-21657553)
chr7 (116-195)||(23797064-23797141)
[»] chr8 (19 HSPs)
chr8 (115-203)||(9861567-9861655)
chr8 (116-203)||(10070028-10070115)
chr8 (115-203)||(31212312-31212400)
chr8 (116-202)||(8791877-8791963)
chr8 (116-204)||(5879875-5879962)
chr8 (116-192)||(14148396-14148472)
chr8 (116-203)||(31212453-31212540)
chr8 (116-203)||(33892036-33892123)
chr8 (116-200)||(29242844-29242927)
chr8 (116-203)||(15229616-15229703)
chr8 (118-200)||(6906445-6906527)
chr8 (141-203)||(33892205-33892267)
chr8 (116-203)||(29242432-29242518)
chr8 (117-200)||(39484728-39484810)
chr8 (116-162)||(6906264-6906310)
chr8 (119-197)||(14148860-14148937)
chr8 (115-203)||(10069850-10069938)
chr8 (151-203)||(36874345-36874397)
chr8 (116-180)||(37037295-37037358)
[»] chr4 (13 HSPs)
chr4 (115-203)||(28687630-28687717)
chr4 (116-203)||(54164635-54164722)
chr4 (124-200)||(17431132-17431208)
chr4 (116-203)||(54164466-54164553)
chr4 (117-203)||(13552831-13552917)
chr4 (113-193)||(17430710-17430790)
chr4 (118-176)||(32185283-32185341)
chr4 (116-164)||(7513527-7513575)
chr4 (115-203)||(32186636-32186723)
chr4 (116-195)||(33752710-33752789)
chr4 (140-203)||(34665004-34665067)
chr4 (137-198)||(17615618-17615679)
chr4 (118-191)||(30941504-30941576)
[»] chr6 (13 HSPs)
chr6 (116-203)||(34637593-34637680)
chr6 (116-203)||(13340612-13340699)
chr6 (116-203)||(31298893-31298980)
chr6 (118-200)||(13340445-13340527)
chr6 (117-203)||(24704308-24704394)
chr6 (116-193)||(403307-403383)
chr6 (143-203)||(14365097-14365157)
chr6 (115-203)||(30519680-30519767)
chr6 (116-199)||(12289980-12290063)
chr6 (116-203)||(31298724-31298811)
chr6 (114-199)||(34637423-34637507)
chr6 (140-196)||(6190593-6190648)
chr6 (151-191)||(19045071-19045111)
[»] chr2 (21 HSPs)
chr2 (118-203)||(16127920-16128005)
chr2 (119-203)||(981086-981169)
chr2 (116-203)||(4921332-4921419)
chr2 (114-192)||(25330558-25330636)
chr2 (117-198)||(980920-981000)
chr2 (118-203)||(12874849-12874934)
chr2 (115-203)||(7328467-7328554)
chr2 (116-200)||(18509497-18509581)
chr2 (115-203)||(20972391-20972479)
chr2 (115-203)||(32945611-32945699)
chr2 (116-195)||(32483646-32483725)
chr2 (119-199)||(27847860-27847940)
chr2 (117-197)||(37897727-37897807)
chr2 (116-203)||(37897575-37897662)
chr2 (116-165)||(16192620-16192669)
chr2 (138-196)||(26403028-26403086)
chr2 (118-203)||(16126222-16126307)
chr2 (117-194)||(24225551-24225628)
chr2 (116-203)||(7328333-7328420)
chr2 (159-203)||(25330723-25330767)
chr2 (127-203)||(35926736-35926811)
[»] chr1 (17 HSPs)
chr1 (118-203)||(22679495-22679580)
chr1 (116-203)||(32800293-32800380)
chr1 (116-203)||(16706504-16706594)
chr1 (116-200)||(22679337-22679421)
chr1 (115-203)||(23485669-23485757)
chr1 (116-203)||(16706335-16706422)
chr1 (116-203)||(30749109-30749196)
chr1 (116-203)||(30770560-30770647)
chr1 (113-187)||(23528233-23528307)
chr1 (115-199)||(30748950-30749034)
chr1 (115-199)||(30770401-30770485)
chr1 (116-200)||(35294333-35294417)
chr1 (121-199)||(13765561-13765639)
chr1 (116-198)||(14760047-14760129)
chr1 (116-156)||(51941890-51941930)
chr1 (119-196)||(15393331-15393407)
chr1 (151-200)||(20171423-20171472)
[»] scaffold0328 (2 HSPs)
scaffold0328 (115-201)||(11623-11709)
scaffold0328 (116-203)||(11010-11096)
[»] scaffold0025 (1 HSPs)
scaffold0025 (116-201)||(63996-64081)


Alignment Details
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 22297666 - 22297845
Alignment:
Q  20 ctaagttagaagagactgacatctcatctaaacatttttagttgaaggacttatttaannnnnnnnnngaaatagtttagagatctatggattaatgggt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||           |||||||||||||| ||||||||||||| ||    
T  22297666 ctaagttagaagagactgacatctcatctaaacatttttagttcaagaacttgtttaatttttttttttaaatagtttagagacctatggattaatgagt 22297765  T
Q  120 taaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  22297766 taaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccct 22297845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 22298016 - 22297931
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||| || || ||||||||| |||||||||||||||| ||   |||||||||||||| |||||||||||||||||    
T  22298016 gttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatattttttaagtttttggtccctctaa 22297931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 25906213 - 25906126
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||| | |  |||||||||| ||||||||||||||| ||  || ||||||| |||||| |||||||||||||||    
T  25906213 gggttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatattctttaggcttttggtccctctaa 25906126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 3935959 - 3936045
Alignment:
Q  110 attaatgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtc 196  Q
    ||||| ||||||||||||||||| |||| ||||||||||  || ||||||||| |  || |||||||||||||||| ||||||||||    
T  3935959 attaaagggttaaataagtaaatggttcatctaaatataacaatatttgatttcaatccctctaaaatattttttacgtttttggtc 3936045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 29673791 - 29673710
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||||||||| ||||| |||||||||  |||||||||||||||  | |||||||||||| ||| | ||||||||||||    
T  29673791 ttaaataagtaaatggttcccctaaatatacaaacatttgattttagttcctctaaaatatttcttaaggttttggtccctc 29673710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 20510551 - 20510464
Alignment:
Q  116 gggttaaataagtaaatagttcctc-taaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||| ||||||||||| |||| ||||||||| ||||||||||||||| ||   |||||||||||||||| ||||| |||||||||    
T  20510551 gggttaaaaaagtaaatagt-cctcataaatatataaacatttgattttagtcccattaaaatattttttaggcttttgatccctctaa 20510464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 6843082 - 6843169
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||| ||||||||  || ||||||||  ||||||||||||||| ||| ||| ||||||  |||| ||||||||||||||||    
T  6843082 gggttaaataaataaatagtctctttaaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaa 6843169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 29673291 - 29673377
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||| || ||  ||||||||  ||||||||||||||| ||| |||||||| |||||||| ||||| |||||||||    
T  29673291 gggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaata-tttttaggattttgttccctctaa 29673377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 13657805 - 13657718
Alignment:
Q  116 gggttaaataagtaaatagttcctct-aaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||| ||||| ||||||| ||||||||||||||||   | |||||||||| ||| || ||||| |||||||||    
T  13657805 gggttaaataagtaaatagt-cctctgaaatatactaacatttgattttagttttcctaaaatattattttggcttttgttccctctaa 13657718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 203
Target Start/End: Original strand, 17047859 - 17047942
Alignment:
Q  120 taaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||| |||||||||  |||||||||||  || |||||||||||| ||| |||||||||| ||||   |||||||||||||||    
T  17047859 taaatatgtaaatagtctctctaaatataccaatatttgattttagccctcctaaaatattctttaaacttttggtccctctaa 17047942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 38298694 - 38298781
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||  |   ||||||||||| || ||||||||| || || ||||||||||| ||||||||||| ||| ||||||    
T  38298694 gggttaaataagtaaatgatcagtctaaatatatcaatatttgatttaagtccctctaaaatattctttaggttttttgtctctctaa 38298781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 2846572 - 2846622
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttag 165  Q
    |||||||||||||||||| || || |||||||||| |||||||||||||||    
T  2846572 tgggttaaataagtaaatggtccccctaaatatatcaacatttgattttag 2846622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 165
Target Start/End: Original strand, 2858411 - 2858459
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttag 165  Q
    |||||||||||||||| || || |||||||||| |||||||||||||||    
T  2858411 ggttaaataagtaaatggtccccctaaatatatcaacatttgattttag 2858459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 13657552 - 13657636
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||| ||||| || ||| ||||||||  |||||||||||||||  | ||||||||||| |||||  |||||||| ||||||    
T  13657552 ttaaataaataaatggtccctttaaatatacaaacatttgattttagttcctctaaaatattctttagacttttggtctctctaa 13657636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 24490694 - 24490777
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||||||||| || | ||||| ||||  ||||||||||||||| |  |||||||||| | ||| ||||||||||||||    
T  24490694 gggttaaataagtaaatggtccttctaa-tataccaacatttgattttagtctctctaaaatatctcttaagtttttggtccctc 24490777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Original strand, 20510361 - 20510420
Alignment:
Q  140 ctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    |||||||||||||||||||||||||| ||    |||||||| ||||||||||| ||||||    
T  20510361 ctaaatatattaacatttgattttagtcccctaaaaatattctttaggtttttagtccct 20510420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 5161157 - 5161081
Alignment:
Q  116 gggttaaataagtaaat-agttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttg 193  Q
    ||||||||||||||||| | || || ||||||||||||||||||||||||  ||  |||||||||| ||||||||||||    
T  5161157 gggttaaataagtaaatgattttct-taaatatattaacatttgattttactcc-cctaaaatattatttaggtttttg 5161081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 12272526 - 12272579
Alignment:
Q  140 ctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttg 193  Q
    |||||||||  ||||||||||||||| |  ||||||||| ||||||||||||||    
T  12272526 ctaaatataccaacatttgattttagtctctctaaaataatttttaggtttttg 12272579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 195
Target Start/End: Original strand, 38900217 - 38900301
Alignment:
Q  110 attaatgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggt 195  Q
    ||||| |||||||||||||||||  | ||||||||||||  || |||| |||||| | || ||||||||||||||| | |||||||    
T  38900217 attaaagggttaaataagtaaattttccctctaaatataccaatattttatttta-gtctcctaaaatattttttatgcttttggt 38900301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 36737006 - 36737038
Alignment:
Q  114 atgggttaaataagtaaatagttcctctaaata 146  Q
    |||||||||||||||||||||||| ||||||||    
T  36737006 atgggttaaataagtaaatagttcatctaaata 36737038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 38299201 - 38299117
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    ||||||||||||||||||| || |  ||||||||  || ||| ||||||||  | |||||||| || |||||| |||||||||||    
T  38299201 tgggttaaataagtaaatattttccttaaatataccaatattcgattttagttcctctaaaattttctttaggcttttggtccct 38299117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 32619042 - 32618955
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||| ||||| || |||||||    
T  32619042 gggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctctaa 32618955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 30430271 - 30430357
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||| || ||||||||||||  |||||||||||||||  | ||||||||||| |||||| |||||||||||||||    
T  30430271 ggttaaataagtaaatggtccctctaaatataccaacatttgattttagttcctctaaaatattctttaggcttttggtccctctaa 30430357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 30172071 - 30172150
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggt 195  Q
    ||||||||||||||||| || || |||||||||| ||||||||||||||| ||   ||||||||| ||||||||||||||    
T  30172071 gggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccccttaaaatattctttaggtttttggt 30172150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 6931196 - 6931109
Alignment:
Q  116 gggttaaataagtaaatagttcctct-aaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||||||| || | ||||| |||| ||||||||||| || ||||||    
T  6931196 gggttaaataagtaaatagt-cctcttaaatatactaacatttgattttagtccctttaaaacatttcttaggtttttgatctctctaa 6931109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 34502626 - 34502689
Alignment:
Q  140 ctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||| ||||||||||||||| || | |||||||||||||||| |||| ||||||||||    
T  34502626 ctaaatatatcaacatttgattttagtccctataaaatattttttaggcttttcgtccctctaa 34502689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 43907974 - 43907899
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggttttt 192  Q
    |||||||||||||||||  | ||| |||||||| ||| |||||||||||| ||  ||||||||||||||||||||||    
T  43907974 gggttaaataagtaaatgatccct-taaatatactaatatttgattttagtccccctaaaatattttttaggttttt 43907899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 4304143 - 4304230
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||| ||||| || ||  ||||||||  ||||||||||||||| ||| ||||||||||| ||| | ||||||||| |||||    
T  4304143 gggttaaataaataaatcgtccccttaaatataccaacatttgattttagtcctcctaaaatatttcttaagcttttggtccttctaa 4304230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 4304403 - 4304325
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttgg 194  Q
    |||||||||||||||||| |  | |||||||||  ||||||||||||||| || |||||||||||  |||| |||||||    
T  4304403 gggttaaataagtaaataatctccctaaatataccaacatttgattttagtccctctaaaatattcattagatttttgg 4304325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 30173707 - 30173621
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||| |||||||| | |||||||||  || |||||||||||| ||  ||||||| || |||||| ||||| |||||||||    
T  30173707 ggttaaataagaaaatagtttccctaaatataccaatatttgattttagtccccctaaaattttctttaggcttttgatccctctaa 30173621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 25799071 - 25799147
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttt 191  Q
    ||||||||||| |||||| ||   ||||||| ||| ||||||||||||||| ||  ||||||||| |||||||||||    
T  25799071 tgggttaaatatgtaaatggtctttctaaatgtataaacatttgattttagtccacctaaaatatattttaggtttt 25799147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 44094187 - 44094235
Alignment:
Q  151 aacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    ||||||||||||||  ||||||||||||||| ||||| |||||||||||    
T  44094187 aacatttgattttaatccttctaaaatatttcttaggcttttggtccct 44094235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 19279894 - 19279949
Alignment:
Q  110 attaatgggttaaataagtaaatagttcctctaaatatattaacatttgattttag 165  Q
    ||||| ||||||||||||||| ||||||| |||| ||||  |||||||||||||||    
T  19279894 attaaagggttaaataagtaagtagttcccctaagtataccaacatttgattttag 19279949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 199
Target Start/End: Complemental strand, 34396942 - 34396911
Alignment:
Q  168 cttctaaaatattttttaggtttttggtccct 199  Q
    ||||||||||||||||||||||||||||||||    
T  34396942 cttctaaaatattttttaggtttttggtccct 34396911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 45405131 - 45405072
Alignment:
Q  141 taaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||| |||||||||||||||| ||  |||||||||| |||||| |||| |||||||    
T  45405131 taaatatactaacatttgattttagtccccctaaaatattctttaggcttttagtccctc 45405072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 2928096 - 2928178
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||||||| || |  |||||||||  ||||||||||| ||| || |||||||| ||  ||||| ||||||||||||    
T  2928096 gttaaataagtaaatggtcctcctaaatataccaacatttgattctagtccctctaaaattttccttaggcttttggtccctc 2928178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 28725769 - 28725683
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatatt---aacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||||||||| || || ||||||||| |   |||||||||||||| | || | ||||||||  ||||||||||||||||||    
T  28725769 gggttaaataagtaaatggtccccctaaatataataccaacatttgatttta-gtctcccaaaatattcattaggtttttggtccctc 28725683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 31198302 - 31198385
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  31198302 ttaaataagtaaatagttcc-ctaaatataccaacatttgattttagtccttctaaaatattttttaggttattgatccctctaa 31198385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 23797298 - 23797213
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||| |||||||||| | |||||||||| ||||||||||||||| || |||||||||||| |||| ||||||||||||||||    
T  23797298 gttaaatatgtaaatagtttccctaaatatatcaacatttgattttagtccctctaaaatatttcttagatttttggtccctctaa 23797213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 6036550 - 6036635
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||| ||   ||||||| ||||||||||||||| | ||||||    
T  6036550 gttaaataagtaaatagttcccctaaatatatcaacatttgattttagtccccttaaaatagtttttaggtttttggcctctctaa 6036635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 7760850 - 7760769
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||||||||||||||| |||||||||  ||||||||||||||| || | |||||||||| ||||| ||||||||||||    
T  7760850 ttaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctc 7760769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 31172428 - 31172344
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||  | ||| ||||||||  ||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  31172428 ttaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaa 31172344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 31198554 - 31198467
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||| ||| ||||||||  |||||||||||||||  || ||||||||||| ||||| |||||| ||||||||    
T  31198554 tgggttaaataagtaaatagtccctttaaatataccaacatttgattttagttctcctaaaatatttcttaggcttttgg-ccctctaa 31198467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 37081350 - 37081263
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||| |||| |||||||||| ||| ||||||||||| ||  | ||||||||  |||||||||||||||||||||    
T  37081350 tgggttaaataagtaaata-ttcccctaaatatatcaacgtttgattttagtcccccaaaaatattccttaggtttttggtccctctaa 37081263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 29635233 - 29635321
Alignment:
Q  114 atgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||| || || |||||||||| ||||||||||||||| ||  ||||||||||  ||||  |||||||||||||||    
T  29635233 atgggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtcc-cctaaaatattccttagacttttggtccctctaa 29635321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 19105510 - 19105423
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||| || |||||||||  ||| ||||||||||| ||   |||| |||| |||||| |||||||||||||||    
T  19105510 gggttaaataagtaaatagtccccctaaatataccaacttttgattttagtccccttaaactattctttaggcttttggtccctctaa 19105423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 35054445 - 35054532
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||||| |||||||||| |||||||| |||||   || | ||||||||| |||||  ||||||| |||||||    
T  35054445 gggttaaataagtaaatagttcttctaaatatactaacatttaattttgatccctttaaaatattctttagacttttggttcctctaa 35054532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 9686540 - 9686454
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||| |  |||||||||| || |||||||||||| ||   ||||||||| |||||| ||||||||| |||||    
T  9686540 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaa 9686454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 29635757 - 29635675
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||| |||||| |||   |||||||||| |||||||||||||||  || ||||||||||||||| | ||||||||||||    
T  29635757 gttaaatatgtaaatggttgtcctaaatatatcaacatttgattttagttctcctaaaatattttttaagattttggtccctc 29635675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 3555365 - 3555448
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||||||| |||| || || |||||||||  ||||||||||||||| ||  ||||||||||| ||||| ||||||||||||    
T  3555365 gggttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatatttcttagg-ttttggtccctc 3555448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 7760608 - 7760692
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||||||||||||| | | ||||||||||  | ||| ||||||||| ||  |||||||||| |||||| ||||||||||||    
T  7760608 gggttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatattctttaggcttttggtccctc 7760692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 12821178 - 12821266
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||| || ||  ||||||||  ||| ||||||||||  ||  ||||||||||||||||| ||||||| |||||||    
T  12821178 tgggttaaataagtaaatggtccccttaaatataccaacgtttgattttaatccccctaaaatattttttaggcttttggttcctctaa 12821266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 202
Target Start/End: Original strand, 19105256 - 19105341
Alignment:
Q  116 gggttaaataagtaaatagttcctc-taaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctcta 202  Q
    |||||||||||||||| || ||| | |||||||| ||||||| |||||||| ||| |||||||||| |||||| ||||||||||||||    
T  19105256 gggttaaataagtaaa-agatccgcataaatatactaacattcgattttagtcct-ctaaaatattctttaggcttttggtccctcta 19105341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 20165073 - 20165011
Alignment:
Q  140 ctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctcta 202  Q
    |||||||||  ||||||||||||||| || |||||||||||  ||||||||||| ||||||||    
T  20165073 ctaaatataccaacatttgattttagtccctctaaaatattcattaggtttttgatccctcta 20165011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 8104649 - 8104710
Alignment:
Q  131 atagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggttttt 192  Q
    ||||||||||||||||||| |||||||||||| || || | || ||||||||||||| ||||    
T  8104649 atagttcctctaaatatatcaacatttgatttcagtccctttacaatattttttaggctttt 8104710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 21657553 - 21657468
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||  | ||||||||| ||||||||||| |||| ||   |||||||||  ||| | ||||| |||||||||    
T  21657553 gttaaataagtaaatagtctccctaaatatactaacatttgatattagcccccttaaaatattccttacgcttttgatccctctaa 21657468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 23797064 - 23797141
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggt 195  Q
    ||||||||||||||||| ||||  ||||||| || || |||||||||||| ||   ||||| ||| ||||||||||||||    
T  23797064 gggttaaataagtaaatggttc--ctaaatacataaaaatttgattttagtccccttaaaacattatttaggtttttggt 23797141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 9861567 - 9861655
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||| |  |||||||||| ||||||||||||||| || | ||||||||| |||||| |||||||||||||||    
T  9861567 tgggttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccctataaaatattctttaggcttttggtccctctaa 9861655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 10070115 - 10070028
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||| |||||||||| |||||||||  || |||| ||||||  ||| |||||||||||||||||||||||||||||||||    
T  10070115 gggttaaataagcaaatagttcccctaaatataccaatattttattttaatcctcctaaaatattttttaggtttttggtccctctaa 10070028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 31212312 - 31212400
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||| ||  ||||||||| ||||||||||||||| ||   ||||||||| |||||| |||||||||||||||    
T  31212312 tgggttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatattctttaggcttttggtccctctaa 31212400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 202
Target Start/End: Complemental strand, 8791963 - 8791877
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctcta 202  Q
    ||||||||||||||||||||||   |||||||| |||||||||||||||  |||  |||||||||| ||||||||||  ||||||||    
T  8791963 gggttaaataagtaaatagttctcttaaatatactaacatttgattttaatcctcataaaatatttcttaggttttttatccctcta 8791877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 5879875 - 5879962
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaac 204  Q
    ||||||||||||||||||||  | ||||||||| ||| |||||||||||| | ||||||||||||| ||| |  |||||||||||||||    
T  5879875 gggttaaataagtaaatagtctccctaaatatactaatatttgattttagtctttctaaaatatttcttaag-ctttggtccctctaac 5879962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 14148396 - 14148472
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggttttt 192  Q
    ||||| ||||||||| | || || |||||||||| ||||||||||||||| ||| ||||||||||| ||||||||||    
T  14148396 gggtttaataagtaagtggtccccctaaatatatcaacatttgattttagtcctcctaaaatatttcttaggttttt 14148472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 31212540 - 31212453
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||  | |||||||||  ||||||||||||||| ||   ||||||||| |||||||||||| | |||||||    
T  31212540 gggttaaataagtaaatagtctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttgtttcctctaa 31212453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 33892036 - 33892123
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||||   ||||||||  ||||||||||||||| ||    |||||||| |||||||||||||||| |||||    
T  33892036 gggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaa 33892123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 29242927 - 29242844
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||||||||| || || |||||  ||| ||||||||||||||| || ||||||| |||| ||||||||| ||||||||    
T  29242927 gggttaaataagtaaattgtccc-ctaaaattatcaacatttgattttagtccctctaaaaaatttcttaggttttcggtccctc 29242844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 15229616 - 15229703
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||||||  ||||||||  ||||||| ||||||| || | ||||||||| ||| |  ||||| |||||||||    
T  15229616 gggttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatattcttttgacttttgatccctctaa 15229703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 200
Target Start/End: Complemental strand, 6906527 - 6906445
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||||||  || || |||||||||  ||||||||||||||| ||   |||||||||||||||| ||||| ||||||    
T  6906527 gttaaataagtaaacggtccccctaaatataccaacatttgattttagtccccataaaatattttttaggcttttgatccctc 6906445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 33892267 - 33892205
Alignment:
Q  141 taaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||  ||||||||||||||| || | ||||||||| |||| |||||||||||||||||    
T  33892267 taaatataccaacatttgattttagtccctttaaaatattctttatgtttttggtccctctaa 33892205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 29242432 - 29242518
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||| | || |||||||| |||  ||||||| ||||||| || |||||||||||  ||||| ||||||| |||||||    
T  29242432 gggttaaataagtaacttgtccctctaaa-ataccaacattttattttagtccctctaaaatattcattaggcttttggttcctctaa 29242518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 200
Target Start/End: Complemental strand, 39484810 - 39484728
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||||||||||| ||||| |||||||||| |||||||  |||||  |   ||||||||||| ||||| ||||||||||||    
T  39484810 ggttaaataagtaaatggttcccctaaatatatcaacattt-tttttaatctccctaaaatatttcttaggattttggtccctc 39484728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 6906264 - 6906310
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattt 162  Q
    |||||||||||||||||||| || |||||||||  ||||||||||||    
T  6906264 gggttaaataagtaaatagtccccctaaatataccaacatttgattt 6906310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 14148937 - 14148860
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtcc 197  Q
    |||||||| ||||| | |||| ||||||||  ||||||||||||||| ||  |||| |||||||||||| |||||||||    
T  14148937 ttaaataactaaat-gatcctttaaatataccaacatttgattttagtccccctaacatattttttaggcttttggtcc 14148860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 10069850 - 10069938
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||| ||||||||||  | || |||||| ||  ||||||| ||||||  || ||||||||||| |||||| ||||||||| |||||    
T  10069850 tgggttacataagtaaatgttcccactaaatgtaccaacatttaattttaacccctctaaaatattctttaggattttggtccttctaa 10069938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 36874345 - 36874397
Alignment:
Q  151 aacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||| |||||||  | |||||||||||  |||||||||||||||||||||    
T  36874345 aacatttaattttagttcctctaaaatattccttaggtttttggtccctctaa 36874397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 37037358 - 37037295
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatatt 180  Q
    ||||||||||||||||| || | |||||||||   ||||||||||||||| || |||||||||||    
T  37037358 gggttaaataagtaaatggt-cttctaaatattccaacatttgattttagtccctctaaaatatt 37037295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 28687717 - 28687630
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||||| | ||||||||| |||||||||||||||    |||||||||||||||||| |||||||||||||||    
T  28687717 tgggttaaataagtaaatagttctt-taaatatatcaacatttgattttagttactctaaaatattttttagggttttggtccctctaa 28687630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 54164722 - 54164635
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||  | |||||||||  ||||||||||||||| |  | |||||||||||||||||||| |||||||||||    
T  54164722 gggttaaataagtaaatagtctccctaaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaa 54164635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 17431208 - 17431132
Alignment:
Q  124 taagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||| || | ||||||||||| ||||||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  17431208 taagtaaatggtccatctaaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctc 17431132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 54164466 - 54164553
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||   ||||||||||  ||||||||||||||| |||  |||||||| ||||||| ||||||||| |||||    
T  54164466 gggttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcctcataaaatatattttaggcttttggtccatctaa 54164553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 13552917 - 13552831
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||| |  |||||||||| || |||||||||||| ||   ||||||||| |||||| ||||||||| |||||    
T  13552917 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaa 13552831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 193
Target Start/End: Original strand, 17430710 - 17430790
Alignment:
Q  113 aatgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttg 193  Q
    |||||||||| ||| ||||| || ||||||||||||  ||||||||||||||| || |||||||||||  ||||| |||||    
T  17430710 aatgggttaagtaaataaattgtccctctaaatataccaacatttgattttagtccctctaaaatattccttaggcttttg 17430790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 32185283 - 32185341
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaa 176  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||||| || |||||||    
T  32185283 gttaaatgagtaaatagtccctctaaatataccaacatttgattttagtccctctaaaa 32185341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 7513527 - 7513575
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgatttta 164  Q
    ||||||||||||||||||| |||||||||||||  ||||||| ||||||    
T  7513527 gggttaaataagtaaatagctcctctaaatataccaacatttaatttta 7513575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 32186723 - 32186636
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||| |||| || ||| ||||||||  ||||||| |||||||  | ||||||||||| |||||| |||||||| ||||||    
T  32186723 tgggttaaataagaaaatggtccct-taaatataccaacatttaattttagttcctctaaaatattctttaggcttttggtctctctaa 32186636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 195
Target Start/End: Complemental strand, 33752789 - 33752710
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggt 195  Q
    ||||||||||||||||  || | | ||||||||| ||||||||||||||| |   |||||||||| |||||| |||||||    
T  33752789 gggttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctccctaaaatattctttaggcttttggt 33752710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 34665004 - 34665067
Alignment:
Q  140 ctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||| |||||||||||||||| ||   ||||||||| ||||||||||||  ||||||||    
T  34665004 ctaaatatactaacatttgattttagtccccttaaaatattctttaggtttttgacccctctaa 34665067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 17615618 - 17615679
Alignment:
Q  137 cctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccc 198  Q
    ||||||||||||| || |||||||||||| ||| ||||||||| | ||||| |||| |||||    
T  17615618 cctctaaatatatgaatatttgattttagtcctcctaaaatatatcttaggcttttagtccc 17615679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 30941576 - 30941504
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttt 191  Q
    |||||||||||||||| |  ||||||||||| |||| ||||||||||| | | ||||||||||| | |||||||    
T  30941576 gttaaataagtaaataatctctctaaatatactaac-tttgattttagtcttcctaaaatatttatgaggtttt 30941504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 34637680 - 34637593
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||||  | |||||||||| |||||||||||||||  |  |||||||||| || |||||||||||||||||||    
T  34637680 gggttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaa 34637593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 13340699 - 13340612
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||| | ||||||| ||  |||||||| |||||||||||||||| ||   ||||||||| ||||||||||||||||||||||    
T  13340699 gggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaa 13340612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 31298980 - 31298893
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||| ||| ||||||||  || ||||||||||||  | ||||||||||| |||||| ||||| |||||||||    
T  31298980 gggttaaataagtaaatagtccctttaaatataccaatatttgattttagttcctctaaaatattctttaggcttttgctccctctaa 31298893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 13340445 - 13340527
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||||||||||||| ||  ||||||||  ||||||||||||||| || | ||||| ||| |||||| ||||||||||||    
T  13340445 gttaaataagtaaatagtccccttaaatataccaacatttgattttagtccctataaaacattctttaggcttttggtccctc 13340527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 203
Target Start/End: Original strand, 24704308 - 24704394
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||| ||||||||||| |||||||||||||||  || |||||||||||| |   |||||||||| |||| | |||||||||||||||    
T  24704308 ggttgaataagtaaatggttcctctaaatataccaatatttgattttagtctccctaaaatattatttatgcttttggtccctctaa 24704394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 403307 - 403383
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttg 193  Q
    |||||||||||||||||||| |||||||||| | ||| |||| ||||||  || ||||||||||| ||||||||||||    
T  403307 gggttaaataagtaaatagtccctctaaataaactaatatttaattttaatcc-tctaaaatattctttaggtttttg 403383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 14365157 - 14365097
Alignment:
Q  143 aatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||| ||||||||||||||| || |||||||||||| ||||  |||||||||||||||    
T  14365157 aatatatcaacatttgattttagtccatctaaaatatttcttagaattttggtccctctaa 14365097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 30519680 - 30519767
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||| || | ||||||||||  ||||||||||||||  |  | ||||||||| |||| |||||||||||||||||    
T  30519680 tgggttaaataagtaaatggt-cgtctaaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaa 30519767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 12289980 - 12290063
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    ||||||||||||||||||||  | |||||||||  ||||||||||||||| |   ||||||||||   |||||||||| |||||    
T  12289980 gggttaaataagtaaatagtctccctaaatataccaacatttgattttagcctgcctaaaatattccctaggtttttgatccct 12290063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 31298724 - 31298811
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||  |  || |||| |||  ||||||| ||||||  || |||||||||||| ||||| |||||||||||||||    
T  31298724 gggttaaataagtaaatgatctctttaaaaataccaacatttaattttaatccctctaaaatatttcttaggcttttggtccctctaa 31298811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 34637423 - 34637507
Alignment:
Q  114 atgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    ||||||||||||||||||||||  |  ||||||||  ||||||||||||||| ||  |||||||||| || ||  |||||||||||    
T  34637423 atgggttaaataagtaaatagtctccataaatataccaacatttgattttagtcc-cctaaaatattcttgagacttttggtccct 34637507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 6190593 - 6190648
Alignment:
Q  140 ctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtc 196  Q
    |||||||||| |||||||||||||| | || || |||||||| ||||||||||||||    
T  6190593 ctaaatatatcaacatttgatttta-gtctccttaaatatttcttaggtttttggtc 6190648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 19045111 - 19045071
Alignment:
Q  151 aacatttgattttaggccttctaaaatattttttaggtttt 191  Q
    ||||||||||||||| ||||||||||||||| ||| |||||    
T  19045111 aacatttgattttagtccttctaaaatatttcttatgtttt 19045071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 16127920 - 16128005
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||| ||  ||||||||  ||||||| ||||||| ||| |||||||||| | ||||||||||||||||||||    
T  16127920 gttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaa 16128005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 981169 - 981086
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||  |||||||||||  ||||||||||||||| ||  |||||||||| |||||| |||||||||||||||    
T  981169 ttaaataagtaaatagtctctctaaatataccaacatttgattttagtcc-cctaaaatattctttaggcttttggtccctctaa 981086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 4921419 - 4921332
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||| ||||||||  |||||||||||| ||||||||||||||  ||   ||||||||||||||| ||||| ||||||||||    
T  4921419 gggttaaataaataaatagtctctctaaatatatcaacatttgattttaatccccttaaaatattttttagattttttgtccctctaa 4921332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 25330558 - 25330636
Alignment:
Q  114 atgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggttttt 192  Q
    |||||||||||||||||||||| || ||||||| || ||||||||||||||| || |||||||| || ||||| |||||    
T  25330558 atgggttaaataagtaaatagtccccctaaatacatcaacatttgattttagtccctctaaaattttctttagattttt 25330636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 980920 - 981000
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccc 198  Q
    ||||||||||||||||  | ||| ||||||||| ||||||||||||||| || |||||||||||| ||||| ||||||||||    
T  980920 ggttaaataagtaaatgatccctttaaatatatcaacatttgattttagtcc-tctaaaatatttcttaggcttttggtccc 981000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 12874934 - 12874849
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||    | |||||||  || |||||||||||| || ||||||||||| ||||||||||||||||||||||    
T  12874934 gttaaataagtaaatagtcttcccaaatataccaatatttgattttagtccctctaaaatattatttaggtttttggtccctctaa 12874849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 7328554 - 7328467
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||||||||||  | ||||||||| |||||||||| ||||| ||   ||||||||| |||||||| |||||||||||||    
T  7328554 tgggttaaataagtaaatagtctccctaaatatactaacatttgactttagtcc-cataaaatattctttaggttattggtccctctaa 7328467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 18509497 - 18509581
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||| ||||| || || |||||||||  ||||||||||||||| || |||||||||||  || |||||||||||||||    
T  18509497 gggttaaataattaaatggtccccctaaatataccaacatttgattttagtccctctaaaatattcctttggtttttggtccctc 18509581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Complemental strand, 20972479 - 20972391
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||| ||| || ||| ||||||||| ||||||||||||||| ||    ||||||||| |||||||||||||||| ||||    
T  20972479 tgggttaaataagtgaatggtccctttaaatatatcaacatttgattttagtccccaaaaaatatttcttaggtttttggtcccgctaa 20972391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 32945611 - 32945699
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||| ||||||||| || | |||||||  ||||||||||||||| ||   ||||||||| ||||| |||||| |||||||||    
T  32945611 tgggttaaataggtaaatagtcccccaaaatataccaacatttgattttagtccccataaaatattatttagatttttgatccctctaa 32945699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 32483646 - 32483725
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggt 195  Q
    |||||||||||||||||| ||||| |||||||| | |||||||||||||   |   |||||||||||||||| |||||||    
T  32483646 gggttaaataagtaaataattcctttaaatatactgacatttgattttaattcccataaaatattttttaggcttttggt 32483725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 27847860 - 27847940
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    ||||||||||||||||| ||  ||||||||  ||||||||||||||| ||   |||||||||  ||| |||||||||||||    
T  27847860 ttaaataagtaaatagtccccataaatataccaacatttgattttagtccacttaaaatattccttaagtttttggtccct 27847940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 37897807 - 37897727
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtcc 197  Q
    ||||||||||||||| |||  | |||||||||  |||||||  |||||| ||| ||||||||||| ||||| |||||||||    
T  37897807 ggttaaataagtaaaaagtctcactaaatataccaacattttgttttagtcctcctaaaatatttcttaggcttttggtcc 37897727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 37897575 - 37897662
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||| ||||||  |  ||||||| |  ||||||||||||||  || |||||||||||  ||||||||| |||||||||||    
T  37897575 gggttaaataaggaaatagccctcctaaatagaccaacatttgattttactccctctaaaatattccttaggttttcggtccctctaa 37897662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 16192669 - 16192620
Alignment:
Q  116 gggttaaataagtaaatagttcctct-aaatatattaacatttgattttag 165  Q
    |||||||||||||||||||| ||||| |||||||| |||||||||||||||    
T  16192669 gggttaaataagtaaatagt-cctcttaaatatatcaacatttgattttag 16192620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 26403028 - 26403086
Alignment:
Q  138 ctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtc 196  Q
    ||||||||||||||| |||||||||||| ||  |||||||||| || ||| ||||||||    
T  26403028 ctctaaatatattaaaatttgattttagtccccctaaaatattcttcaggcttttggtc 26403086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 16126222 - 16126307
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||||||| ||| ||  ||||||||  ||||||| ||||||| ||| ||||| |||| | || |||||| ||||||||||    
T  16126222 gttaaataagtaaacagtccccttaaatataccaacatttaattttagtcctcctaaattattatgtacgttttttgtccctctaa 16126307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 24225628 - 24225551
Alignment:
Q  117 ggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttgg 194  Q
    |||||| ||| ||||| || |||| ||||||||||| |||||||||||  | |  ||||||||| |||||||||||||    
T  24225628 ggttaagtaattaaatggtccctcaaaatatattaatatttgattttaatcttcataaaatattctttaggtttttgg 24225551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 7328333 - 7328420
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttt-taggtttttggtccctctaa 203  Q
    ||||||||||||||||  | |||| ||||||||  | |||||||||| || || || ||||||||||| ||||||||| ||||||||||    
T  7328333 gggttaaataagtaaa-cgatcctataaatataccatcatttgatttcagtccctccaaaatatttttgtaggtttttagtccctctaa 7328420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 25330767 - 25330723
Alignment:
Q  159 attttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||| || | |||||||||||||||||||||||||| |||||    
T  25330767 attttagtccctttaaaatattttttaggtttttggtccttctaa 25330723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 35926736 - 35926811
Alignment:
Q  127 gtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||| || |||||||||  ||||||||||||||| |    ||||||||||||||||||||| || |||||||    
T  35926736 gtaaatagtccc-ctaaatataccaacatttgattttagtctccataaaatattttttaggtttttagttcctctaa 35926811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 22679580 - 22679495
Alignment:
Q  118 gttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||   | || |||||||||  ||||||||||||||| || |||||||||||| |||||||||||||||||||||    
T  22679580 gttaaataagtaaacgatccccctaaatataccaacatttgattttagtccctctaaaatatttgttaggtttttggtccctctaa 22679495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 32800380 - 32800293
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||| ||||||||||||||| || |||||||||| || |||||||||||  |||  ||||||||| | ||||||||||||||||||||    
T  32800380 gggtcaaataagtaaatagtcccactaaatatatcaatatttgattttaatcctcataaaatattatgtaggtttttggtccctctaa 32800293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 16706594 - 16706504
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatatta---acatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||| ||||||||| || |||||||||  |   |||||||||||||| ||  |||||||||| ||||||||||||||||||||||    
T  16706594 gggttaaatatgtaaatagtccccctaaatataccaccaacatttgattttagtccccctaaaatattctttaggtttttggtccctctaa 16706504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 22679337 - 22679421
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    |||||||||||||||||||| ||||| ||||||| ||||| ||||||||  ||  |||||||||  ||||||||||| |||||||    
T  22679337 gggttaaataagtaaatagtccctctgaatatatcaacatatgattttaatccccctaaaatatcctttaggttttttgtccctc 22679421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 23485669 - 23485757
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||| ||||||||||||||  | ||||||||||||| |||||||||||| || | ||||||  ||||||  ||||||||||||||||    
T  23485669 tgggttgaataagtaaatagtctccctaaatatattaatatttgattttagtccatttaaaatgctttttaaatttttggtccctctaa 23485757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 16706335 - 16706422
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||| || ||||| | ||||||||||||  ||||||||||||||| || |||||||| || |||||| ||||||||| |||||    
T  16706335 gggttaaatgagaaaatattccctctaaatataccaacatttgattttagtccctctaaaattttctttaggcttttggtccttctaa 16706422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 30749196 - 30749109
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||| ||||||| | |  |||||||||| ||||||||||||||   | |||||||||||||||| ||||||||| |||||||    
T  30749196 gggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaa 30749109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 116 - 203
Target Start/End: Complemental strand, 30770647 - 30770560
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    |||||||||| ||||||| | |  |||||||||| ||||||||||||||   | |||||||||||||||| ||||||||| |||||||    
T  30770647 gggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaa 30770560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 23528307 - 23528233
Alignment:
Q  113 aatgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttagg 187  Q
    |||| ||||||||||||||||||   ||||||||||| ||||||| ||||||| |||||| ||||||| ||||||    
T  23528307 aatgagttaaataagtaaatagtctttctaaatatatcaacatttaattttagtccttctgaaatattctttagg 23528233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 30748950 - 30749034
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    |||||||||||||||||| || |  |||||||||  || |||||||||||| ||  |||||||||| |||||| |||||||||||    
T  30748950 tgggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtccct 30749034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 199
Target Start/End: Original strand, 30770401 - 30770485
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    |||||||||||||||||| || |  |||||||||  || |||||||||||| ||  |||||||||| |||||| |||||||||||    
T  30770401 tgggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtccct 30770485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 35294333 - 35294417
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||| |||||  | ||| ||||||||| ||||||||||||||| || || ||||||||| | ||| ||||||||||||    
T  35294333 gggttaaataattaaatgatccctttaaatatatcaacatttgattttagtccatcgaaaatatttctgaggcttttggtccctc 35294417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 13765561 - 13765639
Alignment:
Q  121 aaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccct 199  Q
    ||||||||||||| |  | |||||||||  ||||||||||||||| ||   ||||||||| ||||||||||||||||||    
T  13765561 aaataagtaaataatctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttggtccct 13765639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 198
Target Start/End: Complemental strand, 14760129 - 14760047
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccc 198  Q
    |||||||||||||||||  | ||  ||||||||  ||||||||||||||  ||  ||||||||||||||||| ||||||||||    
T  14760129 gggttaaataagtaaatgatccccttaaatataccaacatttgattttaatccccctaaaatattttttaggcttttggtccc 14760047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 51941890 - 51941930
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatt 156  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  51941890 gggttaaataagtaaatagttcccctaaatatatcaacatt 51941930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 15393407 - 15393331
Alignment:
Q  119 ttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtc 196  Q
    |||||||||||||| || || | |||||||  |||||||||||| || ||  ||||||||| ||||||||||||||||    
T  15393407 ttaaataagtaaatggtcccccgaaatataccaacatttgatttcagtccccctaaaatat-ttttaggtttttggtc 15393331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 20171423 - 20171472
Alignment:
Q  151 aacatttgattttaggccttctaaaatattttttaggtttttggtccctc 200  Q
    ||||||||||||||| || |||||||||||| ||||  ||||||||||||    
T  20171423 aacatttgattttagtccctctaaaatatttcttagacttttggtccctc 20171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 11709 - 11623
Alignment:
Q  115 tgggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctct 201  Q
    |||||||||||| ||||| ||| || ||||||||  || |||||||||||| |  |||||||||||| |||||||||||||||||||    
T  11709 tgggttaaataaataaatggttgctttaaatatacgaatatttgattttagtcactctaaaatatttcttaggtttttggtccctct 11623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 11010 - 11096
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctctaa 203  Q
    ||||||||||||||||||| |  |||||||||| ||||| ||||||||||  | | ||||||||| ||||| ||||| ||| ||||||    
T  11010 gggttaaataagtaaatag-tattctaaatatactaacagttgattttagttcctttaaaatattctttagatttttagtctctctaa 11096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 64081 - 63996
Alignment:
Q  116 gggttaaataagtaaatagttcctctaaatatattaacatttgattttaggccttctaaaatattttttaggtttttggtccctct 201  Q
    ||||||||| ||||||||||  | |||||||||  ||||||| |||||||  |  |||||||||| ||||||||||| ||||||||    
T  64081 gggttaaatcagtaaatagtctccctaaatataccaacatttaattttagttcccctaaaatattatttaggtttttagtccctct 63996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University