View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7689_high_37 (Length: 216)

Name: NF7689_high_37
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7689_high_37
NF7689_high_37
[»] chr2 (36 HSPs)
chr2 (1-111)||(16192563-16192673)
chr2 (31-109)||(39786314-39786392)
chr2 (8-109)||(18509495-18509595)
chr2 (9-104)||(981076-981169)
chr2 (9-105)||(16127920-16128015)
chr2 (5-108)||(37897574-37897676)
chr2 (8-105)||(40152701-40152796)
chr2 (8-104)||(27847860-27847955)
chr2 (9-105)||(12874839-12874934)
chr2 (17-107)||(27847999-27848088)
chr2 (58-108)||(39159300-39159350)
chr2 (43-107)||(32945612-32945676)
chr2 (13-109)||(43130306-43130400)
chr2 (31-106)||(980920-980994)
chr2 (31-82)||(18560521-18560572)
chr2 (29-108)||(30714122-30714200)
chr2 (43-105)||(16126222-16126284)
chr2 (13-107)||(20972385-20972478)
chr2 (37-107)||(25330560-25330630)
chr2 (43-96)||(35926736-35926788)
chr2 (43-104)||(39786509-39786569)
chr2 (8-108)||(12874679-12874778)
chr2 (9-88)||(39751268-39751345)
chr2 (36-107)||(7328483-7328553)
chr2 (31-106)||(37897732-37897807)
chr2 (59-105)||(16333357-16333403)
chr2 (12-82)||(35926886-35926955)
chr2 (9-82)||(26403031-26403103)
chr2 (42-82)||(26859208-26859247)
chr2 (42-109)||(32945803-32945868)
chr2 (43-109)||(4921355-4921421)
chr2 (5-72)||(8185256-8185322)
chr2 (36-103)||(16126405-16126471)
chr2 (41-108)||(17368860-17368927)
chr2 (9-108)||(32483645-32483743)
chr2 (31-97)||(4921179-4921245)
[»] chr8 (26 HSPs)
chr8 (5-109)||(6906262-6906364)
chr8 (9-107)||(9861568-9861665)
chr8 (8-109)||(33892034-33892134)
chr8 (31-107)||(31212313-31212389)
chr8 (9-109)||(31212443-31212542)
chr8 (9-109)||(33892195-33892294)
chr8 (5-105)||(6906428-6906527)
chr8 (30-109)||(8791886-8791965)
chr8 (5-109)||(5879873-5879975)
chr8 (5-109)||(37037259-37037360)
chr8 (9-104)||(14148845-14148937)
chr8 (42-109)||(15229614-15229681)
chr8 (37-108)||(20691273-20691343)
chr8 (8-109)||(10070017-10070117)
chr8 (9-108)||(29242831-29242928)
chr8 (31-109)||(14148394-14148472)
chr8 (9-106)||(27503649-27503745)
chr8 (5-106)||(39484711-39484810)
chr8 (31-111)||(7765947-7766026)
chr8 (8-82)||(8791735-8791808)
chr8 (31-109)||(29242430-29242507)
chr8 (43-107)||(27503426-27503490)
chr8 (5-104)||(1047259-1047357)
chr8 (37-104)||(5880049-5880116)
chr8 (37-82)||(7766370-7766415)
chr8 (17-81)||(36874336-36874399)
[»] chr3 (22 HSPs)
chr3 (9-109)||(6931099-6931198)
chr3 (13-105)||(2928096-2928187)
chr3 (5-109)||(30172069-30172171)
chr3 (31-109)||(4304141-4304219)
chr3 (12-106)||(45405062-45405155)
chr3 (5-108)||(28725666-28725770)
chr3 (5-109)||(43907874-43907976)
chr3 (31-104)||(4475108-4475181)
chr3 (31-108)||(8896047-8896124)
chr3 (13-106)||(30430271-30430363)
chr3 (37-108)||(4304333-4304404)
chr3 (31-107)||(27614014-27614090)
chr3 (31-106)||(30173632-30173707)
chr3 (17-100)||(44094309-44094391)
chr3 (15-78)||(45404826-45404888)
chr3 (43-108)||(32618978-32619043)
chr3 (38-108)||(19279899-19279969)
chr3 (31-83)||(41993156-41993208)
chr3 (31-90)||(34502619-34502678)
chr3 (59-109)||(4475311-4475361)
chr3 (61-111)||(28725274-28725324)
chr3 (42-107)||(25799513-25799577)
[»] chr7 (26 HSPs)
chr7 (5-108)||(7760607-7760709)
chr7 (5-109)||(7760752-7760855)
chr7 (12-109)||(3555363-3555458)
chr7 (9-107)||(29635235-29635331)
chr7 (8-109)||(15329855-15329956)
chr7 (13-109)||(19105417-19105512)
chr7 (31-107)||(31198477-31198553)
chr7 (9-106)||(9686444-9686540)
chr7 (9-106)||(20164620-20164716)
chr7 (31-107)||(12821179-12821255)
chr7 (13-107)||(37081257-37081349)
chr7 (9-105)||(6036550-6036645)
chr7 (31-105)||(20165021-20165095)
chr7 (31-106)||(47741037-47741112)
chr7 (31-105)||(21657479-21657553)
chr7 (8-109)||(31172333-31172433)
chr7 (9-109)||(19105254-19105352)
chr7 (5-105)||(23797199-23797298)
chr7 (31-109)||(21657295-21657373)
chr7 (9-104)||(31198302-31198395)
chr7 (8-82)||(35304208-35304281)
chr7 (43-108)||(8130092-8130155)
chr7 (5-107)||(15330002-15330103)
chr7 (30-109)||(18881110-18881191)
chr7 (31-109)||(35054443-35054521)
chr7 (5-105)||(29635658-29635757)
[»] chr6 (12 HSPs)
chr6 (10-105)||(13340445-13340539)
chr6 (5-108)||(12289979-12290081)
chr6 (9-109)||(34637583-34637682)
chr6 (31-109)||(31298904-31298982)
chr6 (17-109)||(13340610-13340701)
chr6 (5-107)||(30519681-30519781)
chr6 (42-107)||(34637425-34637489)
chr6 (31-106)||(7359599-7359674)
chr6 (13-106)||(24704308-24704400)
chr6 (31-109)||(31298722-31298800)
chr6 (25-109)||(6190567-6190649)
chr6 (57-109)||(12290175-12290226)
[»] chr1 (26 HSPs)
chr1 (8-107)||(30748951-30749049)
chr1 (8-107)||(30770402-30770500)
chr1 (31-107)||(15393145-15393221)
chr1 (3-109)||(16706488-16706596)
chr1 (31-109)||(14760053-14760131)
chr1 (29-107)||(30746773-30746851)
chr1 (29-107)||(30768224-30768302)
chr1 (5-105)||(22679481-22679580)
chr1 (8-111)||(16706331-16706433)
chr1 (5-111)||(22679333-22679438)
chr1 (9-102)||(13765561-13765653)
chr1 (5-109)||(30749095-30749198)
chr1 (5-109)||(30770546-30770649)
chr1 (9-104)||(15393314-15393407)
chr1 (42-105)||(51900116-51900179)
chr1 (8-74)||(8819350-8819414)
chr1 (37-109)||(30746947-30747018)
chr1 (37-109)||(30768398-30768469)
chr1 (13-108)||(35294332-35294426)
chr1 (29-108)||(39255606-39255685)
chr1 (47-109)||(14759951-14760012)
chr1 (31-101)||(20171395-20171464)
chr1 (32-105)||(23528229-23528302)
chr1 (60-109)||(39785218-39785267)
chr1 (36-104)||(23485857-23485925)
chr1 (12-108)||(32800286-32800381)
[»] chr4 (18 HSPs)
chr4 (31-109)||(33752713-33752791)
chr4 (9-109)||(54164625-54164724)
chr4 (9-106)||(13552821-13552917)
chr4 (31-108)||(34665158-34665235)
chr4 (36-105)||(53343707-53343776)
chr4 (13-107)||(17430713-17430806)
chr4 (5-99)||(17431115-17431208)
chr4 (13-107)||(32186630-32186722)
chr4 (8-107)||(28687619-28687716)
chr4 (9-108)||(54164465-54164563)
chr4 (31-109)||(28687459-28687537)
chr4 (10-105)||(32185283-32185375)
chr4 (31-108)||(7513526-7513603)
chr4 (37-111)||(16854813-16854887)
chr4 (31-82)||(34665005-34665056)
chr4 (37-106)||(17250463-17250532)
chr4 (42-83)||(33752326-33752367)
chr4 (31-103)||(31078933-31079003)
[»] chr5 (26 HSPs)
chr5 (31-109)||(25906137-25906215)
chr5 (8-106)||(25905959-25906056)
chr5 (8-109)||(6843080-6843180)
chr5 (43-108)||(13657741-13657806)
chr5 (43-108)||(29673290-29673355)
chr5 (8-108)||(24490693-24490791)
chr5 (5-107)||(2344619-2344720)
chr5 (9-111)||(22297921-22298022)
chr5 (31-109)||(20510475-20510553)
chr5 (5-82)||(15773722-15773798)
chr5 (8-105)||(22297764-22297860)
chr5 (8-109)||(13657547-13657647)
chr5 (31-108)||(17048035-17048111)
chr5 (56-107)||(2846573-2846624)
chr5 (56-106)||(2858411-2858461)
chr5 (10-104)||(29673698-29673791)
chr5 (45-82)||(12272527-12272564)
chr5 (31-107)||(38299124-38299200)
chr5 (9-103)||(17047859-17047952)
chr5 (43-109)||(5161094-5161159)
chr5 (58-108)||(33626007-33626057)
chr5 (53-106)||(11929289-11929342)
chr5 (43-108)||(38900222-38900286)
chr5 (42-106)||(2344507-2344570)
chr5 (57-109)||(2846957-2847008)
chr5 (57-109)||(2858794-2858845)
[»] scaffold0042 (2 HSPs)
scaffold0042 (31-108)||(30310-30387)
scaffold0042 (3-96)||(30711-30802)
[»] scaffold0025 (2 HSPs)
scaffold0025 (8-108)||(63983-64082)
scaffold0025 (10-108)||(63826-63921)
[»] scaffold0129 (1 HSPs)
scaffold0129 (31-106)||(6273-6347)
[»] scaffold0328 (2 HSPs)
scaffold0328 (8-83)||(11608-11684)
scaffold0328 (12-108)||(11009-11103)
[»] scaffold0007 (1 HSPs)
scaffold0007 (38-82)||(175548-175592)


Alignment Details
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 16192563 - 16192673
Alignment:
Q  1 actgatggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttat 100  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16192563 actgatggatgaaattttttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttgatatatttaagaggactatttacttat 16192662  T
Q  101 ttaaccctaga 111  Q
    |||||||||||    
T  16192663 ttaaccctaga 16192673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 39786392 - 39786314
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  39786392 aaaagtctaaggaaaattttagcgagactaaaatcaaatgttggtatatttaataggattatttacttatttaacccta 39786314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 18509595 - 18509495
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||| |||||||||||| ||||||||| || |||||||||||||| | ||||||||||||||||||||||||||| | |||| ||||| |||||||||||    
T  18509595 gatggaaaattttggagggaccaaaaa-ccaaaggaatattttagagggactaaaatcaaatgttggtatatttagggggaccatttaattatttaaccc 18509497  T
Q  108 ta 109  Q
    ||    
T  18509496 ta 18509495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 981076 - 981169
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta-agaggactatttacttatttaa 104  Q
    |||||||||||| ||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  981076 atgaaaaattttagagggaccaaaa-gcctaaagaatattttaggg-gactaaaatcaaatgttggtatatttagaga-gactatttacttatttaa 981169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 16128015 - 16127920
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||||||||||| ||| ||||||||| ||||   |||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  16128015 atgaaaaattttagagggaccaaaaa-cctacataatattttaggaggactaaaattaaatgttggtatatttaaggggactatttacttatttaac 16127920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 37897676 - 37897574
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||| |||| ||| |||| |||| ||||||||||||||||| | || ||||||||||||||||| |||||| |||| |||||| |||||||||    
T  37897676 atggatgaaaatttttagagggaccgaaaa-cctaaggaatattttagagggagtaaaatcaaatgttggtctatttaggagggctatttccttatttaa 37897578  T
Q  105 ccct 108  Q
    ||||    
T  37897577 ccct 37897574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 40152796 - 40152701
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||||  ||||||||| ||||||| |||||||||| ||||| |||||||||||||||    
T  40152796 gatgaaaaattttggagggacaaaaaatc-taaggaatattttaggaggactaaaataaaatgtttgtatatttaa-aggaccatttacttatttaac 40152701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 27847955 - 27847860
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||| ||||||  || ||||||||| | |||||||||||||| |  ||||||||||||||||||||||||||| | |||||||||||||||||||    
T  27847955 gatgaataattttaaagggaccaaaaa-cttaaggaatattttaagtggactaaaatcaaatgttggtatatttatggggactatttacttatttaa 27847860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 105
Target Start/End: Original strand, 12874839 - 12874934
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    ||||||| |||| ||| ||||||||| |||||  |||||||||| | |||||||||||||| |||||||||||  || |||||||||||||||||||    
T  12874839 atgaaaacttttagagggaccaaaaa-cctaaataatattttagagggactaaaatcaaatattggtatatttgggaagactatttacttatttaac 12874934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 27847999 - 27848088
Alignment:
Q  17 ttttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||| |||||||| || |||| |||||||||  |||||||||||||||||||||||||||||||| ||| | |||| |||| |||||    
T  27847999 ttttggagggaccaaaa-gcttaagtaatattttaaagagactaaaatcaaatgttggtatatttaagaagacaaattacatattgaaccc 27848088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 39159300 - 39159350
Alignment:
Q  58 ctaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  39159300 ctaaaatcaaatgttagtatatttaagaggactattaacttatttaaccct 39159350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 32945676 - 32945612
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||| || ||||||||||||||||||||||||||  | ||||||||||| ||||||||||    
T  32945676 aatattttatggggactaaaatcaaatgttggtatattttgggggactatttacctatttaaccc 32945612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 43130306 - 43130400
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||||| |||||||| |||||||||| ||||| | | |||| ||||||||||| |||||||||| |  ||| |||||||||||||||||||    
T  43130306 aaaattttggagggaccaaaa-gcctaaggaaaattttggagggactgaaatcaaatgt-ggtatatttagggagaccatttacttatttaacccta 43130400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 980994 - 980920
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||||||||| |||||||||| | |||||||||||||||||| |||||||||  |||  ||||||||||||||||    
T  980994 aaaagcctaagaaatattttagag-gactaaaatcaaatgttgatatatttaaagggatcatttacttatttaacc 980920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 18560572 - 18560521
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  18560572 aaaagtctaaggaatattttaaggagactaaaatcaaatgttgatatattta 18560521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 30714200 - 30714122
Alignment:
Q  29 caaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||| ||||  ||||||||| | ||||||||||||||||||| |||||||||| |||| |||||| |||||||||||    
T  30714200 caaaaaggctaaaaaatattttaagaagactaaaatcaaatgttgatatatttaaggggaccatttac-tatttaaccct 30714122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 16126284 - 16126222
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||| ||||||  ||||||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  16126284 aataatttaggaggactaaaattaaatgttggtatatttaaggggactgtttacttatttaac 16126222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 20972385 - 20972478
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||| | | ||||||||| |||||| ||||||||  || |||||||||||||||||| |||||||||  |||| ||| |||||||||||||    
T  20972385 aaaattttagcgggaccaaaaa-cctaagaaatattttttggggactaaaatcaaatgttgatatatttaaagggaccattcacttatttaaccc 20972478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 107
Target Start/End: Complemental strand, 25330630 - 25330560
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||| ||| ||||||| | |||||||||||||||||| | |||||| | ||||||||||||||||||||||    
T  25330630 ctaaagaaaattttagagggactaaaatcaaatgttgatgtatttagggggactatttacttatttaaccc 25330560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 35926788 - 35926736
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttac 96  Q
    ||||||||| ||||||||||||||||||||||||||||| || |||||||||||    
T  35926788 aatattttatggagactaaaatcaaatgttggtatattt-aggggactatttac 35926736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 39786509 - 39786569
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||| ||||||||| ||||| ||||||||||| || ||||||||||||||||||    
T  39786509 aatattttagggggactaaaattaaatgctggtatatttatga-gactatttacttatttaa 39786569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 12874778 - 12874679
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||  |||| |||||||||||| | |||||| ||||||||  | ||| ||||||||||||||||||||||| |   || |||||||||||||||||    
T  12874778 gatgaaattttttagagagaccaaaa-gtctaagggatattttaaagggaccaaaatcaaatgttggtatatttagggaaaccatttacttatttaaccc 12874680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 39751345 - 39751268
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagagga 88  Q
    |||||||||||||| ||  ||||||||  |||||||||||||| ||  ||||||||||||| |||||||||||| |||||    
T  39751345 atgaaaaattttgggga--ccaaaaagtttaaggaatattttaagggaactaaaatcaaatattggtatatttatgagga 39751268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 7328483 - 7328553
Alignment:
Q  36 cctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||| |||||||||| || ||||||| ||||||||| ||||||||| |  |||||||||||||||||||||    
T  7328483 cctaaagaatattttatgg-gactaaagtcaaatgttagtatatttagggagactatttacttatttaaccc 7328553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 37897732 - 37897807
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||||||||| |||||||||||  ||||||||  |||||||||||||||||    |||| |||||||||||||||    
T  37897732 aaaagcctaagaaatattttaggaggactaaaacaaaatgttggtatatttagtgagactttttacttatttaacc 37897807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 16333357 - 16333403
Alignment:
Q  59 taaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||    
T  16333357 taaaattaaatgttggtatatttaaggggactgtttacttatttaac 16333403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 82
Target Start/End: Original strand, 35926886 - 35926955
Alignment:
Q  12 aaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    ||||||||| |||| | |||||| |||||  |||||||||  |||||||||||||||||||||||||||||    
T  35926886 aaaaattttagagaaatcaaaaa-cctaaaaaatattttattgagactaaaatcaaatgttggtatattta 35926955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 26403103 - 26403031
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    |||||||||||| || ||||||||| |||| | ||||||||||||| |||||||||||||| ||  ||||||||    
T  26403103 atgaaaaattttagacagaccaaaa-gcctgaagaatattttagggggactaaaatcaaattttaatatattta 26403031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 26859247 - 26859208
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  26859247 gaatattttaggg-gactaaaatcaaatgttggtatattta 26859208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Original strand, 32945803 - 32945868
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||| ||| | ||||||||||| |||||||||||| ||  | ||||||||||||||||||||    
T  32945803 gaatattttatggaaattaaaatcaaattttggtatatttagga--attatttacttatttaacccta 32945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 4921355 - 4921421
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatattta-agaggactatttacttatttaacccta 109  Q
    ||||||||| || || ||||||||||||||| |||||||| ||| ||||||||| |||||||||||||    
T  4921355 aatattttaaggggattaaaatcaaatgttgatatatttagaga-gactatttatttatttaacccta 4921421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 8185322 - 8185256
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgtt 72  Q
    ||||||| ||||||||| |  |||||||| ||||||  |||||||||||| |||||||||||||||||    
T  8185322 atggatggaaaattttgaatggaccaaaa-gcctaaataatattttagggggactaaaatcaaatgtt 8185256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 16126405 - 16126471
Alignment:
Q  36 cctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttattta 103  Q
    ||||| ||||||||||||  || ||||||||||| |||||||||||| |||||  |||||||||||||    
T  16126405 cctaaagaatattttaggc-gattaaaatcaaattttggtatatttatgaggatcatttacttattta 16126471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 17368860 - 17368927
Alignment:
Q  41 ggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||| ||||||| | ||| |||||||||||||||||||||||||  ||| || |||||||||| ||||    
T  17368860 ggaaaattttagagggaccaaaatcaaatgttggtatatttaaggagaccatatacttatttagccct 17368927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 32483743 - 32483645
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||| |||| |||| ||||||| ||||||  ||||||||| ||  | |||||||||||||  ||||||||||  | | |||||||||||||||||||    
T  32483743 atgaaaatttttagagaaaccaaaa-gcctaaaaaatattttatgggaattaaaatcaaatgtcagtatatttaaaggaattatttacttatttaaccct 32483645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 4921245 - 4921179
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttact 97  Q
    |||||| |||||||||||||| ||  | ||||||||||| |||||||||||| ||| || |||||||    
T  4921245 aaaagcttaaggaatattttaagggaattaaaatcaaatattggtatatttaggagaacaatttact 4921179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 6906364 - 6906262
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||| | |||||||||||||||||||    
T  6906364 atggatgaaaaattttggaaggaccaaaa-gcctaaggaatattttatggggactaaa-tcaaatgttggtatatttagggggactatttacttatttaa 6906267  T
Q  105 cccta 109  Q
    |||||    
T  6906266 cccta 6906262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 9861665 - 9861568
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||||| ||| |||||||| |||||| ||||||||||  | |||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  9861665 atgaaaaattttagagggaccaaaa-gcctaaagaatattttatagggactaaaatcaaatgttgatatatttaggaggactatttacttatttaaccc 9861568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 33892134 - 33892034
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||| |||| ||  ||||||||| ||||| |||||||||  || ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33892134 gatgaaaatttttagaaggaccaaaaa-cctaaagaatattttgaggggactaaaatcaaatgttggtatatttaagagaactatttacttatttaaccc 33892036  T
Q  108 ta 109  Q
    ||    
T  33892035 ta 33892034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 31212389 - 31212313
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||| |||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  31212389 aaaagcctaaagaatattttatggggactaaaatcaaatgttgatatatttaaggggactatttacttatttaaccc 31212313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 31212443 - 31212542
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| |||  | |||||| ||||| |||||||||| || ||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  31212443 atgaaaaattttagaggaaacaaaaa-cctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagactatttacttatttaaccct 31212541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 33892195 - 33892294
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| ||| ||||||||| | ||| ||||||||||  | |||||||||||||||||||||||||||||| || | |||||||||||||||||    
T  33892195 atgaaaaattttagagggaccaaaaa-cataaagaatattttaaagggactaaaatcaaatgttggtatatttaagaagattgtttacttatttaaccct 33892293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 6906428 - 6906527
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||| |||||||| || ||||| ||||||  ||||||||| || ||||||||||||||||||||||||||| | ||||  |||||||||||||    
T  6906428 atggatgaaaatttttggagggatcaaaa-gcctaaaaaatattttatggggactaaaatcaaatgttggtatatttagggggaccgtttacttatttaa 6906526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 8791886 - 8791965
Alignment:
Q  30 aaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||| |||||| ||||||||| |  || |||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  8791886 aaaaaacctaagaaatattttatgaggattaaaatcaaatgttagtatatttaagagaactatttacttatttaacccta 8791965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 5879975 - 5879873
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||||| || ||| |||||||  || |||| ||||||||||  ||||||||||||||| || ||||||||| |  ||||||||||||||||||    
T  5879975 atggatgaaaaatgttagagggaccaaa--gcttaagaaatattttagaaagactaaaatcaaatattagtatatttagggagactatttacttatttaa 5879878  T
Q  105 cccta 109  Q
    |||||    
T  5879877 cccta 5879873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 37037259 - 37037360
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||||||||  || |||||||| |  ||||||||||||||| | ||||||||||||||||||| |||||| ||| ||| ||||||||||||||    
T  37037259 atggatgaaaaatttta-agggaccaaaa-gtataaggaatattttagagggactaaaatcaaatgttggaatattt-agaagaccatttacttatttaa 37037355  T
Q  105 cccta 109  Q
    |||||    
T  37037356 cccta 37037360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 14148845 - 14148937
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||||||| |||||||| ||||||  ||||| |||||| |||||||||||||||||||||||||||| ||||  ||||| ||||||||    
T  14148845 atgaaaaattttggag-gaccaaaa-gcctaaaaaatatgttagggggactaaaatcaaatgttggtatatttaa-aggatcatttagttatttaa 14148937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 15229681 - 15229614
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||  | ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  15229681 gaatattttatagggactaaaataaaatgttggtatatttaagggaactatttacttatttaacccta 15229614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 20691343 - 20691273
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||| || | ||||||||||||||||||    
T  20691343 ctaaggaatattttagggggaataaaatcaaattttggtatatttaag-gggccatttacttatttaaccct 20691273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 10070017 - 10070117
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||||| ||| ||||||||| |||||  |||||||||||  || |||||| |||| |||||||||||| | | ||||||| ||||||||||||    
T  10070017 gatgaaaaattttagagggaccaaaaa-cctaaaaaatattttaggaggattaaaataaaatattggtatatttaggggaactatttgcttatttaaccc 10070115  T
Q  108 ta 109  Q
    ||    
T  10070116 ta 10070117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 29242831 - 29242928
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||| |||||||| |||| |||| |||||| ||| |||||| | |||||||||||||||||| || |||| || |||| ||||||||||||||||||    
T  29242831 atgaaaatttttggagggaccgaaaa-cctaagaaattttttagagggactaaaatcaaatgttgata-attttaggggacaatttacttatttaaccct 29242928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 14148472 - 14148394
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||| |||||| |||||||||||  |||||||||||||||||| |||||||| | |||| | ||||||||| |||||||    
T  14148472 aaaaacctaagaaatattttaggaggactaaaatcaaatgttgatatatttagggggaccacttacttattaaacccta 14148394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 27503649 - 27503745
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||||||  ||| |||||||| ||||||  ||||||||| ||| ||||||||||||| ||| |||||||||| | |  ||||||||||||||||    
T  27503649 atgaaaaatttcagagggaccaaaa-gcctaaataatattttatggaaactaaaatcaaatattgatatatttaagtgaatcatttacttatttaacc 27503745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 39484711 - 39484810
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||  |||||||| ||||||||  |||||| ||||||||||||||| |||||  |||||||| |||||||| | | || ||||||||||||||    
T  39484711 atggatgaaattttttggagggaccaaaat-cctaagaaatattttagggagattaaaa-aaaatgttgatatatttaggggaaccatttacttatttaa 39484808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 7766026 - 7765947
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccctaga 111  Q
    |||| |||||| |||||||||||| | ||||||| |||||||||||||||||| | ||| ||||| ||||||||| |||||    
T  7766026 aaaatcctaagaaatattttaggggg-ctaaaattaaatgttggtatatttaaaaagaccatttaattatttaacgctaga 7765947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 8791808 - 8791735
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    ||||||||||||| ||| ||||||||| |||||  |||||||| ||| || ||||||||||||||| ||||||||    
T  8791808 gatgaaaaattttagagggaccaaaaa-cctaacaaatattttggggtgagtaaaatcaaatgttgatatattta 8791735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 29242507 - 29242430
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||| ||||||||||| | ||||||||| |||||||||||| ||||   |||| | |||||||||||||||||    
T  29242507 aaaagcctaatgaatattttagagggactaaaataaaatgttggtat-tttagagggacaagttacttatttaacccta 29242430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 27503490 - 27503426
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||| | ||||||||| ||||||||| |||||||| |||||  | |||||||||||||||    
T  27503490 aatattttatgaagactaaaagcaaatgttgatatatttaggaggatcacttacttatttaaccc 27503426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 1047357 - 1047259
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||  |||| ||| |||||||| | ||||||||| |||||||  || |||||| |||| || ||||||||| || ||| ||||||||||||||    
T  1047357 atggatgaaatttttttgagggaccaaaa-gtctaaggaatgttttaggaggattaaaataaaatattagtatatttaggaagaccatttacttatttaa 1047259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 5880049 - 5880116
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||||||    ||| |||||||||||||||| |||||| ||| || ||||||||||||||    
T  5880049 ctaaggaatattttaaaaggacaaaaatcaaatgttggtttatttaggagaacaatttacttatttaa 5880116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 7766370 - 7766415
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    |||||||||||| ||||| ||||||||| ||||||| |||||||||    
T  7766370 ctaaggaatattatagggggactaaaataaaatgttagtatattta 7766415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 36874399 - 36874336
Alignment:
Q  17 ttttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattt 81  Q
    |||| ||| ||||||||| ||||||||||||||||| |  |||||||| ||||||||| ||||||    
T  36874399 ttttagagggaccaaaaa-cctaaggaatattttagaggaactaaaattaaatgttggcatattt 36874336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 6931099 - 6931198
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| |||||| |||||| |||||| ||| |||||  | ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6931099 atgaaaaattttagagagatcaaaaa-cctaagaaatgttttaaagggactaaaatcaaatgttagtatatttaagaggactatttacttatttaaccct 6931197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 2928187 - 2928096
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||||||||||| |||||||| |||||||||| ||||||| | ||||| ||||||||||||||||||||| |||||| |||||||||||||||    
T  2928187 aaaattttggagggaccaaaa-gcctaaggaaaattttagagggactagaatcaaatgttggtatatttaggaggaccatttacttatttaac 2928096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 30172171 - 30172069
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||||||||| | | |||||||| ||||| |||||||||| || |||||||||||||||||| |||||||| | |||| ||||||||||||||    
T  30172171 atggatgaaaaattttgtaaa-accaaaaa-cctaaagaatattttaaggggactaaaatcaaatgttgatatatttagggggaccatttacttatttaa 30172074  T
Q  105 cccta 109  Q
    |||||    
T  30172073 cccta 30172069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 4304219 - 4304141
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||| |||| |||||||||||  ||||||||||||||||||||||||||||| |||| ||||| |||||||||||||    
T  4304219 aaaagcttaagaaatattttaggaggactaaaatcaaatgttggtatatttaaggggacgatttatttatttaacccta 4304141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 45405062 - 45405155
Alignment:
Q  12 aaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||||||||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||  || ||||||||||||    
T  45405062 aaaaattttggagggactaaaa-gcctaaagaatattttagggggactaaaatcaaatgttagtatatttaaggggacagttaacttatttaacc 45405155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 108
Target Start/End: Original strand, 28725666 - 28725770
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttgg---tatatttaagaggactatttacttatt 101  Q
    ||||||||||  |||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||   |||||||| | |||| |||||||||||    
T  28725666 atggatgaaattttttggagggaccaaaaa-cctaatgaatatttt-gggagactaaaatcaaatgttggtattatatttagggggaccatttacttatt 28725763  T
Q  102 taaccct 108  Q
    |||||||    
T  28725764 taaccct 28725770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 43907874 - 43907976
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||||||||| || || |||||| |||||  |||||||||||| |||||||||||||| || ||||||||||| |||  ||||||||||||||    
T  43907874 atggatgaaaaattttgaag-gaacaaaaaacctaaaaaatattttagggggactaaaatcaaatattagtatatttaag-ggatcatttacttatttaa 43907971  T
Q  105 cccta 109  Q
    |||||    
T  43907972 cccta 43907976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 4475181 - 4475108
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||| ||||| |||||||||||||  | |||||||||||||||||||||||| ||||||| |||||||||||||    
T  4475181 aaaaccctaaagaatattttaggggaattaaaatcaaatgttggtatatttaggaggactttttacttatttaa 4475108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 8896047 - 8896124
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||| ||  | ||||||||||||||||    
T  8896047 aaaagcttaaagaatattttagggagactaaaattaaatgttggtgtatttaagatgatcacttacttatttaaccct 8896124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 30430363 - 30430271
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||| ||| |||||||| |||||| ||||||||||| |  ||||||||||||||||||||||||||   |||| ||||||||||||||||    
T  30430363 aaaattttagagggaccaaaa-gcctaaagaatattttagaggaactaaaatcaaatgttggtatatttagagggaccatttacttatttaacc 30430271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 4304333 - 4304404
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||| |  || |||||||||||||||||||    
T  4304333 ctaatgaatattttagagggactaaaatcaaatgttggtatatttagggagattatttacttatttaaccct 4304404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 27614090 - 27614014
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||| |||| |||||||||| |||||||||||| ||||||||||||||||| | | |||||||||||  |||||||    
T  27614090 aaaagtctaaagaatattttatggagactaaaattaaatgttggtatatttaggggaactatttacttgattaaccc 27614014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 30173632 - 30173707
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||||| ||| ||||||||| |||||||||||||| |||||||||||| |   ||||||| |||||||||||    
T  30173632 aaaagcctaaagaaaattttagggggactaaaatcaaatattggtatatttagggaaactattttcttatttaacc 30173707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 44094309 - 44094391
Alignment:
Q  17 ttttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttat 100  Q
    |||||||| ||||||||  |||||| ||||||||  ||||||||||||||||||||| |||||||||| |||| |||| |||||    
T  44094309 ttttggagggaccaaaac-cctaagaaatattttcaggagactaaaatcaaatgttgatatatttaaggggaccatttgcttat 44094391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 45404888 - 45404826
Alignment:
Q  15 aattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtata 78  Q
    |||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||| |||||    
T  45404888 aattttggagggaccagaaatc-taaggaatattttagggagactaaaatcaaatgtttgtata 45404826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 32618978 - 32619043
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||||  ||||||||||||||||||| ||||||||   | |||||||||||||||||||||    
T  32618978 aatattttagaaagactaaaatcaaatgttgatatatttagatgaactatttacttatttaaccct 32619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 19279969 - 19279899
Alignment:
Q  38 taaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||||| ||   ||||||||||||||||||||| ||| | | |||| ||||||||||||||||    
T  19279969 taaggaatattttaagggatctaaaatcaaatgttggtatacttaggggaactacttacttatttaaccct 19279899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 41993156 - 41993208
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaa 83  Q
    ||||||||||  ||||||||||||||| ||||||||||| ||| |||||||||    
T  41993156 aaaagcctaaaaaatattttagggagattaaaatcaaatattgatatatttaa 41993208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 34502678 - 34502619
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggact 90  Q
    ||||||||||  |||||||||  | |||||||||||||||||| |||||||| |||||||    
T  34502678 aaaagcctaaaaaatattttatagggactaaaatcaaatgttgatatatttaggaggact 34502619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 4475311 - 4475361
Alignment:
Q  59 taaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||||||| |||||||| ||| ||||||| || |||||||||||    
T  4475311 taaaatcaaatgttgatatatttaggagcactattttctaatttaacccta 4475361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 28725324 - 28725274
Alignment:
Q  61 aaatcaaatgttggtatatttaagaggactatttacttatttaaccctaga 111  Q
    |||| ||||||||||||||||| |  ||||||||||||||||||| |||||    
T  28725324 aaattaaatgttggtatatttatggtgactatttacttatttaactctaga 28725274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 25799513 - 25799577
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||  ||||||||||| ||||||||||||||||| |  | | |||||||||||||||||    
T  25799513 gaatattttaaagagactaaaattaaatgttggtatatttagggagtc-atttacttatttaaccc 25799577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 7760709 - 7760607
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||| |||||||||| |||||||| |||||| ||||||||||||| ||||||||||| ||| |||||||||||  |||| |||||||||||||||    
T  7760709 atggatgaacaattttggagggaccaaaa-gcctaaagaatattttagggggactaaaatcatatgctggtatatttagaaggattatttacttatttaa 7760611  T
Q  105 ccct 108  Q
    ||||    
T  7760610 ccct 7760607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 7760752 - 7760855
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||| |||||||| |||||||| ||||||| |||||||||  | ||||||||||||||||||||||||||| | | |||||||||||||||||    
T  7760752 atggatgaaaatttttggagggaccaaaa-gcctaagaaatattttatagggactaaaatcaaatgttggtatatttaggggaactatttacttatttaa 7760850  T
Q  105 cccta 109  Q
     ||||    
T  7760851 tccta 7760855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 3555458 - 3555363
Alignment:
Q  12 aaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||| ||||||| ||||||||  |||||| |||||||||||| ||||||||||||||||||||||||||| | |||| |||| ||||||||||||||    
T  3555458 aaaaaatttggagggaccaaaa--cctaagaaatattttagggggactaaaatcaaatgttggtatatttagggggaccatttgcttatttaacccta 3555363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 29635331 - 29635235
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||||| ||| |||||||| | |||||||||||||||||| |||||||||||||||||| |||||||| | |||| |||||||||||||||||    
T  29635331 atgaaaaattttagagggaccaaaa-gtctaaggaatattttaggg-gactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 29635235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 15329956 - 15329855
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||| |||||||  ||||||||| | |||| ||||| || ||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||    
T  15329956 gatgaaaatttttggatggaccaaaaaccttaagtaatatctttgggggactaaaatcaaatgttggtatatttaaggggactatttccatatttaaccc 15329857  T
Q  108 ta 109  Q
    ||    
T  15329856 ta 15329855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 19105417 - 19105512
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||| ||| |||||||| |||||| ||||| |||| || ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||    
T  19105417 aaaattttagagggaccaaaa-gcctaaagaatagtttaaggggactaaaatcaaaagttggtatatttagggggactatttacttatttaacccta 19105512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 31198477 - 31198553
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||| |||||||||||   |||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  31198477 aaaagcctaagaaatattttaggagaactaaaatcaaatgttggtatatttaaagggactatttacttatttaaccc 31198553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 9686444 - 9686540
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||||||| ||  |||||||| ||||||  ||||||||| || |||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  9686444 atgaaaaattttagaaggaccaaaa-gcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 9686540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 106
Target Start/End: Complemental strand, 20164716 - 20164620
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||||||||||| ||||||||| | ||||||| ||||||    |||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  20164716 atgaaaaattttggagggaccaaaaa-cttaaggaaaattttaaaatgactaaaatcaaatgttggtatattttaggggaccatttacttatttaacc 20164620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 12821255 - 12821179
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||  |||||||||||| || |||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  12821255 aaaagcctaaaaaatattttagggggattaaaatcaaacgttggtatatttaaggggaccatttacttatttaaccc 12821179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 37081257 - 37081349
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||| ||| ||||||||| ||||||||||||||| ||| ||||||||||||| |||| ||||||| || ||| ||||||||||||||||||    
T  37081257 aaaattttagagggaccaaaaa-cctaaggaatatttttgggggactaaaatcaaacgttgatatattt-aggggaatatttacttatttaaccc 37081349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 6036645 - 6036550
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||||||||||| ||||| ||||||| |||||  | ||||||| || |||||||||||||||||| |||||||| | | ||||||||||||||||||    
T  6036645 atgaaaaattttagagaggccaaaaa-cctaaaaactattttaaggggactaaaatcaaatgttgatatatttaggggaactatttacttatttaac 6036550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 20165021 - 20165095
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||| ||||| ||||||||||| | ||||||||||||||||||||||||||| || ||| |||| ||||||||||    
T  20165021 aaaaacctaatgaatattttagagggactaaaatcaaatgttggtatatttaggaagaccatttccttatttaac 20165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 47741037 - 47741112
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||||||||| |||||||| ||| |||| |||| ||||||||||||||||| | |||| ||||||||| ||||||    
T  47741037 aaaagcctaagaaatatttttgggggactgaaattaaatgttggtatatttatggggaccatttacttaattaacc 47741112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 21657479 - 21657553
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||||| |||||||||||||| || | |||| |||||||||| ||||||||| |  |||||||||||||||||||    
T  21657479 aaaagcgtaaggaatattttaagggggctaatatcaaatgttagtatatttagggagactatttacttatttaac 21657553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 31172333 - 31172433
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||| |||| ||| ||||||||| |||||  |||||||||||  || |||||||||||||| ||||||||||  |||  |||||||||||||| ||    
T  31172333 gatgaaaatttttagagggaccaaaaa-cctaaaaaatattttaggaggattaaaatcaaatgtttgtatatttaaagggatcatttacttatttaatcc 31172431  T
Q  108 ta 109  Q
    ||    
T  31172432 ta 31172433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 19105352 - 19105254
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||| | ||| |||||||| |||||| ||||||||||| | |||||||||| |||||| ||||||||| | |||   |||||||||||||||||    
T  19105352 atgaaaaattatagagggaccaaaa-gcctaaagaatattttagag-gactaaaatcgaatgttagtatatttatgcggatcttttacttatttaaccct 19105255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 23797199 - 23797298
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||| |||| |||| ||| ||||||||| | |||| |||||||||| | |||||||||||||||||| |||||||| |   ||||||||| |||||||    
T  23797199 atggataaaaagttttagagggaccaaaaatc-taagaaatattttagagggactaaaatcaaatgttgatatatttagggaaactatttacatatttaa 23797297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 21657373 - 21657295
Alignment:
Q  31 aaaagcctaaggaatatttta-gggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||| |||| |||||||||| ||||| ||||| | |||||||| |||||||| |||||| |||||||||||||||||||    
T  21657373 aaaagtctaaagaatattttaagggag-ctaaagttaaatgttgatatatttaggaggaccatttacttatttaacccta 21657295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 104
Target Start/End: Complemental strand, 31198395 - 31198302
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||| ||| || ||| || |||||  ||||||||||   |||||||||||||||||||||||||| || | |||||||||||||||||    
T  31198395 atgaaaaattttagagggatcaataa-cctaaaaaatattttagaaggactaaaatcaaatgttggtatattt-agggaactatttacttatttaa 31198302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 35304208 - 35304281
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    |||| ||||||| ||||||||||||| | ||||  |||||||||||  |||||||||||| ||||||||||||||    
T  35304208 gatggaaaatttcggagagaccaaaa-gactaactaatattttaggcggactaaaatcaattgttggtatattta 35304281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 8130092 - 8130155
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||| || ||||||| |  |||||| ||||||||| || ||||||||||||||||||||||    
T  8130092 aatattttatggggactaaact--aatgtttgtatatttaggaagactatttacttatttaaccct 8130155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 15330002 - 15330103
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||  |||||||| ||  |||||||||||| |||| |||| |  || |||||| |||||| | |||||||| |||||| || |||||||||||    
T  15330002 atggatgaaattttttggagggat-aaaaagcctaagaaataatttaagaggattaaaattaaatgtggatatatttaggaggaccatatacttatttaa 15330100  T
Q  105 ccc 107  Q
    |||    
T  15330101 ccc 15330103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 18881191 - 18881110
Alignment:
Q  30 aaaaagcctaaggaatattttagggagactaaaatcaaatgttggt--atatttaagaggactatttacttatttaacccta 109  Q
    ||||| ||||| ||||||||||  |  |||||||||||||||||||  ||||||| | |||||||| |||||||| ||||||    
T  18881191 aaaaaacctaaagaatattttaaaggaactaaaatcaaatgttggtatatatttatggggactattcacttattttacccta 18881110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 35054521 - 35054443
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||| |||| ||||||||||  | ||  ||||| ||||||| |||||||||  || ||||||||||||||||||||||    
T  35054521 aaaagtctaaagaatattttaaagggatcaaaattaaatgttagtatatttagaagaactatttacttatttaacccta 35054443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 29635658 - 29635757
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||| |||| ||||||| ||||||||  | |||  |||||||||||   ||||||||||||||||| |||||||| ||  || |||||| |||||||    
T  29635658 atggatgtaaaactttggagggaccaaaat-cttaaaaaatattttaggagaactaaaatcaaatgttgatatatttaggacaaccatttacatatttaa 29635756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 9e-26; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 13340539 - 13340445
Alignment:
Q  10 tgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    ||||||||||||||| |||||||| |||||| |||| |||||  | ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13340539 tgaaaaattttggagggaccaaaa-gcctaaagaatgttttatagggactaaaatcaaatgttggtatatttaaggggactatttacttatttaac 13340445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 12290081 - 12289979
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||| ||||| || || |||||| |||| ||||||||||||| || ||||||||||||||||||||||||| |  ||||||||||||||||||    
T  12290081 atggatgaaaatttttgaagggatcaaaaa-cctagggaatattttaggcaggctaaaatcaaatgttggtatatttagggagactatttacttatttaa 12289983  T
Q  105 ccct 108  Q
    ||||    
T  12289982 ccct 12289979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 34637583 - 34637682
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| ||| ||||||||| ||| | |||||||||||||  ||||||||||||||||| |||||||| |  ||||||||||||||||||||||    
T  34637583 atgaaaaattttagagggaccaaaaa-cctcaagaatattttaggggaactaaaatcaaatgttgatatatttagggtgactatttacttatttaaccct 34637681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 31298904 - 31298982
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||| ||||||||||| |  ||||||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  31298904 aaaagcctaaagaatattttagaggaactaaaatcaaatattggtatatttaaagggactatttacttatttaacccta 31298982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 13340610 - 13340701
Alignment:
Q  17 ttttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||| ||| ||||||||| ||||| |||||||||| || ||||||||||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  13340610 ttttagagggaccaaaaa-cctaaagaatattttatggggactaaaatcaaatgttagtatatttaaggggactattttcatatttaacccta 13340701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 30519781 - 30519681
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||||||| ||| ||||||||| | |||  |||||||||  |||| ||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  30519781 atggatgaaaaattttagagggaccaaaaa-cttaaataatattttaaagagattaaaatcaaatgttggtatattt-agacgaccatttacttatttaa 30519684  T
Q  105 ccc 107  Q
    |||    
T  30519683 ccc 30519681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 107
Target Start/End: Complemental strand, 34637489 - 34637425
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||||| ||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  34637489 gaatattttaggg-gactaaaatcaaatgttggtatatttatggagactatttacttatttaaccc 34637425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 106
Target Start/End: Original strand, 7359599 - 7359674
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||||||||  |||||||||||| || |||||||||||||||||||||||| |  ||| | ||||||||||||||    
T  7359599 aaaagcctaaataatattttagggggagtaaaatcaaatgttggtatatttagggcgacgagttacttatttaacc 7359674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 24704400 - 24704308
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagagg-actatttacttatttaacc 106  Q
    |||||||| ||| |||||||| || |||  ||||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||| ||||    
T  24704400 aaaattttagagggaccaaaa-gcataaataatattttagggagactaaaatcaaatattggtatattt-agaggaaccatttacttattcaacc 24704308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 31298800 - 31298722
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||| |||||||||| | || |||||| |||||||||||| |||||   ||  |||||||||||||||||||    
T  31298800 aaaagcctaagaaatattttagagggattaaaattaaatgttggtatttttaaagagatcatttacttatttaacccta 31298722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 6190649 - 6190567
Alignment:
Q  25 agaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||| |||||| ||||||| ||| ||||||||||||||||||| |||||||| |  ||  ||||||||| |||||||||    
T  6190649 agaccaaaaa-cctaagaaatatttaagg-agactaaaatcaaatgttgatatatttagggagatcatttacttagttaacccta 6190567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 12290175 - 12290226
Alignment:
Q  57 actaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||| |||||||||||||||| || |||  |||||||||||||||||||    
T  12290175 actaaaattaaatgttggtatattt-aggggatcatttacttatttaacccta 12290226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 30749049 - 30748951
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||||||| || |||||||| |||||| ||||||||||||| |||||||||||||| || ||||||||| |||||| |||||||||||||||||    
T  30749049 gatgaaaaattttgaagggaccaaaa-gcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30748951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 30770500 - 30770402
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||||||| || |||||||| |||||| ||||||||||||| |||||||||||||| || ||||||||| |||||| |||||||||||||||||    
T  30770500 gatgaaaaattttgaagggaccaaaa-gcctaaagaatattttagggggactaaaatcaaatatttgtatatttaggaggaccatttacttatttaaccc 30770402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 15393221 - 15393145
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||||||||||||||||| ||| ||||| |||| |||||||||||  ||||||||||||||||||||||||    
T  15393221 aaaagcctaaggaatattttagggggacgaaaattaaatattggtatatttgtgaggactatttacttatttaaccc 15393145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 16706488 - 16706596
Alignment:
Q  3 tgatggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgt---tggtatatttaagaggactatttactta 99  Q
    |||| |||| |||||||| ||| ||||||||| ||||| ||||||||||||| ||||||||||||||||   ||||||||||| | ||||||||||| ||    
T  16706488 tgatagatggaaaattttagagggaccaaaaa-cctaaagaatattttagggggactaaaatcaaatgttggtggtatatttagggggactatttacata 16706586  T
Q  100 tttaacccta 109  Q
    ||||||||||    
T  16706587 tttaacccta 16706596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 14760053 - 14760131
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||  |||||||||||| || |||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  14760053 aaaagcctaaaaaatattttagggggattaaaatcaaatgttggtatatttaaggggatcatttacttatttaacccta 14760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 30746851 - 30746773
Alignment:
Q  29 caaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||| ||||| |||||||||| ||| ||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  30746851 caaaaaacctaaagaatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaaccc 30746773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 30768302 - 30768224
Alignment:
Q  29 caaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||| ||||| |||||||||| ||| ||||||||||||| || ||||||||||| |||| |||||||||||||||||    
T  30768302 caaaaaacctaaagaatattttaaggaaactaaaatcaaatattagtatatttaaggggaccatttacttatttaaccc 30768224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 22679481 - 22679580
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||| ||| ||| ||||||||| |||||  |||||||||| | ||||||||||||||||||||||||||| | |||   |||||||||||||    
T  22679481 atggatgaaaaaatttagagggaccaaaaa-cctaacaaatattttagagggactaaaatcaaatgttggtatatttagggggatcgtttacttatttaa 22679579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 16706433 - 16706331
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||||| ||  |||||||| |||||| ||| ||||||| | |||||||||||||||||||||||||||   ||| ||||| || |||||||||    
T  16706433 gatgaaaaattttagaaggaccaaaa-gcctaaagaaaattttagagggactaaaatcaaatgttggtatatttagagggaatattttctcatttaaccc 16706335  T
Q  108 taga 111  Q
    ||||    
T  16706334 taga 16706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 22679438 - 22679333
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||||||||  |||||||| ||| ||||| ||||| | ||||||||||| || |||||||| |||||| |||||| |   |||||||||||||||||||    
T  22679438 atggatgaaattttttggagggacaaaaaa-cctaaaggatattttagggggattaaaatcatatgttgatatattcagagggactatttacttatttaa 22679340  T
Q  105 ccctaga 111  Q
    |||||||    
T  22679339 ccctaga 22679333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 13765653 - 13765561
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttattt 102  Q
    ||||||||| ||  || ||||||||| ||||| |||||||||| || ||||||||||||||||||||||||||| |  || |||||||||||||    
T  13765653 atgaaaaatattaaagggaccaaaaa-cctaaagaatattttatggggactaaaatcaaatgttggtatatttagggagattatttacttattt 13765561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 30749095 - 30749198
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||||||| |||  |||||||| | |||  |||||||||| |  | ||||||||||||||| |||||||| ||||| ||||||| |||||||    
T  30749095 atggatgaaaaattttagaggaaccaaaaa-cataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaa 30749193  T
Q  105 cccta 109  Q
    |||||    
T  30749194 cccta 30749198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 30770546 - 30770649
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||||||| |||  |||||||| | |||  |||||||||| |  | ||||||||||||||| |||||||| ||||| ||||||| |||||||    
T  30770546 atggatgaaaaattttagaggaaccaaaaa-cataaaaaatattttagaggaattaaaatcaaatgttgatatatttaggaggattatttacgtatttaa 30770644  T
Q  105 cccta 109  Q
    |||||    
T  30770645 cccta 30770649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 15393314 - 15393407
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||||||||   |||||||||||| |||||  |||||||||||| |||| |||||||||||||||||||||  | |||| ||||||||||||||    
T  15393314 atgaaaaatttcaaagagaccaaaaa-cctaaa-aatattttagggggactgaaatcaaatgttggtatatttcgggggaccatttacttatttaa 15393407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 51900179 - 51900116
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||||||||| ||| |||||||||||||||||| |||||||  ||||| |||||||||||||||    
T  51900179 gaatattttaaggaaactaaaatcaaatgttggaatatttagaaggaccatttacttatttaac 51900116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 8819350 - 8819414
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttgg 74  Q
    ||||||||||||||||| | ||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  8819350 gatgaaaaattttggaggg-ccaaaaa-cctaaggaatattttatggatactaaaatcaaatgttgg 8819414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 30746947 - 30747018
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||||||   | ||||||||| |||||||||||||||| ||| || ||||||||||||||||||||    
T  30746947 ctaaggaatattttgaagggactaaaatgaaatgttggtatattt-agatgattatttacttatttaacccta 30747018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 30768398 - 30768469
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||||||   | ||||||||| |||||||||||||||| ||| || ||||||||||||||||||||    
T  30768398 ctaaggaatattttgaagggactaaaatgaaatgttggtatattt-agatgattatttacttatttaacccta 30768469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 35294426 - 35294332
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| |||||||| |||| || |||||||| |   |||||||||||||||||| |||||||||  |||  ||||| ||||||||||||    
T  35294426 aaaattttggagggaccaaaa-gcctcagaaatattttcgatggactaaaatcaaatgttgatatatttaaagggatcatttaattatttaaccct 35294332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 39255606 - 39255685
Alignment:
Q  29 caaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||| ||||| |||||||||| |  | ||||||||||||||| || |||||| ||||| ||||| ||||||||||||    
T  39255606 caaaaagtctaagaaatattttagaggaattaaaatcaaatgttgataaatttaaaaggacaatttatttatttaaccct 39255685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 14760012 - 14759951
Alignment:
Q  47 ttttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||| | |||||||||||||||||||||||||| ||| ||| |||||||||| ||||||||    
T  14760012 ttttagagggactaaaatcaaatgttggtatattt-agacgaccatttacttatgtaacccta 14759951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 101
Target Start/End: Complemental strand, 20171464 - 20171395
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatt 101  Q
    ||||| ||||| |||||||||| | ||||||||||||||||||||||| |||||  ||| |||||||||||    
T  20171464 aaaagtctaagaaatattttagagggactaaaatcaaatgttggtata-ttaaggagaccatttacttatt 20171395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 23528229 - 23528302
Alignment:
Q  32 aaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    ||||||||| |||||||| ||   ||||||||| |||||||| ||||||||  | |||||||||||||||||||    
T  23528229 aaagcctaaagaatatttcagaaggactaaaattaaatgttgatatatttagaaagactatttacttatttaac 23528302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 39785267 - 39785218
Alignment:
Q  60 aaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||| |||||||||||| |||| | ||||||||||||||||||| ||||    
T  39785267 aaaattaaatgttggtatttttagggggactatttacttatttaatccta 39785218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 23485857 - 23485925
Alignment:
Q  36 cctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    ||||| ||||||||||| |  | ||||||||||| ||||||| |||| |||||  ||||||||||||||    
T  23485857 cctaaagaatattttagaggaattaaaatcaaattttggtatgtttaggaggatcatttacttatttaa 23485925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 32800286 - 32800381
Alignment:
Q  12 aaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||| ||| ||||||||| ||||   ||||||||| |  || ||||||||||| ||| ||||||||   ||||||||||||||||| |||||    
T  32800286 aaaaattttagagggaccaaaaa-cctacataatattttatgaggattaaaatcaaatattgatatatttagtgggactatttacttatttgaccct 32800381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 33752713 - 33752791
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||    
T  33752713 aaaagcctaaagaatattttagggagactaaaatcaaatgttgatatatttaaaaggaccgtttacttatttaacccta 33752791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 54164625 - 54164724
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| ||| |||| |||| |||||  |||||||||  ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  54164625 atgaaaaattttagagggaccgaaaa-cctaaaaaatattttatagagactaaaatcaaatgttggtatatttagggagactatttacttatttaaccct 54164723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 13552821 - 13552917
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||||||| ||  |||||||| ||||||  ||||||||| || |||||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  13552821 atgaaaaattttagaaggaccaaaa-gcctaaataatattttatggggactaaaatcaaatattgatatatttaggaggactatttacttatttaacc 13552917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 34665158 - 34665235
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||||| |  || ||||||||||||||||||    
T  34665158 aaaagcctaaaaaatattttagggtgactaaaatcaaatgttggtatatttaatattaccatttacttatttaaccct 34665235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 53343776 - 53343707
Alignment:
Q  36 cctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    |||||| |||||||||  ||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  53343776 cctaagaaatattttaacgagactaaaatcaaacgttggtatatttaagaggaccatttacttatttaac 53343707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 17430806 - 17430713
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||| ||||| ||||| |||||||||||||||||| | |||||||||||||||||||||||||||   |||| ||||| ||| |||||||    
T  17430806 aaaattttgaagagatcaaaa-gcctaaggaatattttagagggactaaaatcaaatgttggtatatttagagggacaatttatttacttaaccc 17430713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 17431115 - 17431208
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttactta 99  Q
    ||||||||||| |||||||| |||||||| ||||||  |||||||||||| |||||||||||||||||| ||||||||   |||| |||||||||    
T  17431115 atggatgaaaatttttggagggaccaaaa-gcctaaaaaatattttagggggactaaaatcaaatgttgatatatttagatggaccatttactta 17431208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 32186630 - 32186722
Alignment:
Q  13 aaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||| |||||||||||| |||||| ||||||||||| |  |||||||| ||||||||||||||||||| |||| |||| ||||||||||||    
T  32186630 aaaattttagagagaccaaaa-gcctaaagaatattttagaggaactaaaattaaatgttggtatatttaag-ggaccattttcttatttaaccc 32186722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 28687619 - 28687716
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||||| ||| ||||||||  |||||  |||||||||| |  ||||||||||||||||| ||||||||| || ||||||||||||||||||||    
T  28687619 gatgaaaaattttagagggaccaaaac-cctaaaaaatattttagagtaactaaaatcaaatgttgatatatttaa-agaactatttacttatttaaccc 28687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 54164563 - 54164465
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| ||  |||||||| ||||||   |||||||| |  |||||||||||||||||||||||||||  | ||||||||||||||||||||||    
T  54164563 atgaaaaattttagatggaccaaaa-gcctaaaatatattttatgaggactaaaatcaaatgttggtatatttagaacgactatttacttatttaaccct 54164465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 28687537 - 28687459
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggact-atttacttatttaacccta 109  Q
    |||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||| || |||||| ||||||||||||    
T  28687537 aaaagcataaggaatattttagagagattaaaattaaatgttggtatatttaa-agggctcatttacatatttaacccta 28687459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 32185375 - 32185283
Alignment:
Q  10 tgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    ||||||||||| |||||||||| || |||||| ||| |||||| | |||||||||||||||||||||||||||   |||||||||||| |||||||    
T  32185375 tgaaaaattttagagagaccaacaa-cctaag-aat-ttttagagggactaaaatcaaatgttggtatatttagagggactatttactcatttaac 32185283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 7513603 - 7513526
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagagga-ctatttacttatttaaccct 108  Q
    ||||||||||  ||||||||| ||  | |||||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  7513603 aaaagcctaaaaaatattttaaggtaattaaaattaaatgttggtatattt-agaggagctatttacttatttaaccct 7513526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 16854813 - 16854887
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccctaga 111  Q
    ||||||||||||||||   |||||||||  ||||||| | |||||| || |||||||||||||||||||| ||||    
T  16854813 ctaaggaatattttagacggactaaaatttaatgttgatctatttaggacgactatttacttatttaaccataga 16854887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 34665056 - 34665005
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    |||| ||||| |||||||||| || ||||||||||||||||| |||||||||    
T  34665056 aaaaacctaaagaatattttaaggggactaaaatcaaatgttagtatattta 34665005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 17250532 - 17250463
Alignment:
Q  37 ctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||| ||||||||| ||  | |||||||||||||| ||||||||   ||||| ||||||||||||||||    
T  17250532 ctaagaaatattttaagggaaataaaatcaaatgtttgtatatttggaaggaccatttacttatttaacc 17250463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 83
Target Start/End: Complemental strand, 33752367 - 33752326
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatatttaa 83  Q
    ||||||||||||| |||||||||||||| ||| |||||||||    
T  33752367 gaatattttagggggactaaaatcaaatattgatatatttaa 33752326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 31079003 - 31078933
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttattta 103  Q
    |||||||||| ||||||||||||| ||||||||| |||  |||||||||||| || ||  |||||||||||||    
T  31079003 aaaagcctaatgaatattttagggggactaaaattaaa-attggtatatttatga-gatgatttacttattta 31078933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 25906137 - 25906215
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||| |||||||| |||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  25906137 aaaagcctaaagaatatttaagggggactaaaatcaaatgttgatatatttaggaggattatttacttatttaacccta 25906215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 25906056 - 25905959
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||||||||||| ||| |||||||| ||||| | |||| ||||||| |||||||||||||||||||||||| |||| |||  ||||||||||||||||    
T  25906056 gatgaaaaattttagagggaccaaaa-gcctatgaaatactttagggggactaaaatcaaatgttggtatatataaggggatcatttacttatttaacc 25905959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 6843180 - 6843080
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||||| ||| ||||||||| | ||||||||||| ||||  ||||||||||||||||| ||||||||||   ||||||||| |||||||||||    
T  6843180 gatgaaaaattttagagggaccaaaaatc-taaggaatattctaggaggactaaaatcaaatgtttgtatatttaaagagactatttatttatttaaccc 6843082  T
Q  108 ta 109  Q
    ||    
T  6843081 ta 6843080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 13657741 - 13657806
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  13657741 aatattttaggaaaactaaaatcaaatgttagtatatttcagaggactatttacttatttaaccct 13657806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 29673355 - 29673290
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  29673355 aatattttaggaggactaaaatcaaatgttggtatatttaaggggaccatttacttatttaaccct 29673290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 24490791 - 24490693
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||| ||||||||||| ||||||||| | ||||  ||||||||| ||||||||||||||||||||||||| |||  ||||| |||||||||||||||||    
T  24490791 gatgagaaattttggagggaccaaaaa-cttaagagatattttagagagactaaaatcaaatgttggtata-ttagaaggaccatttacttatttaaccc 24490694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 2344619 - 2344720
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||| |||||||||  || |||||||| | ||||||||||| |||| |  |||||||| |||||||||| |||||| |||||||||||||||||||||    
T  2344619 atggataaaaaattttaaagggaccaaaa-gactaaggaatatgttagaggaactaaaataaaatgttggtctatttaggaggactatttacttatttaa 2344717  T
Q  105 ccc 107  Q
    |||    
T  2344718 ccc 2344720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 22297921 - 22298022
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| ||| ||||||||| | |||  ||||||||| || ||||||||||||||||| ||||||||| | |||| ||||||||||||||| ||    
T  22297921 atgaaaaattttagagggaccaaaaa-cttaaaaaatattttaaggggactaaaatcaaatgttagtatatttagggggaccatttacttatttaactct 22298019  T
Q  109 aga 111  Q
    |||    
T  22298020 aga 22298022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 20510475 - 20510553
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||  |||||||||  | |||||||||||||||||  |||||||| ||||||||||||||| ||||||||||    
T  20510475 aaaagcctaaaaaatattttaatgggactaaaatcaaatgtttatatatttatgaggactatttacttttttaacccta 20510553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 15773722 - 15773798
Alignment:
Q  5 atggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    ||||||||||  |||||||| |||||||| |||||||| |||||||||| ||||||||||||| |||| |||||||||    
T  15773722 atggatgaaattttttggagggaccaaaa-gcctaagggatattttaggaagactaaaatcaattgttagtatattta 15773798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 22297860 - 22297764
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaac 105  Q
    ||||| |||||||  || ||||||||| |||||  |||||||||| | |||||||||||||||||| ||||||||   ||||||||||||||||||||    
T  22297860 gatgagaaattttaaagggaccaaaaa-cctaaaaaatattttagagggactaaaatcaaatgttgatatatttagagggactatttacttatttaac 22297764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 13657647 - 13657547
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||  |||| |||||||||||| | |||| ||||||||||| |  |||||||||||||||| ||||||||||  |||| ||||| |||||||| ||    
T  13657647 gatgaaattttttagagagaccaaaa-gtctaaagaatattttagaggaactaaaatcaaatgtttgtatatttaaagggaccatttatttatttaatcc 13657549  T
Q  108 ta 109  Q
    ||    
T  13657548 ta 13657547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 17048035 - 17048111
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||||  ||| |||||||| ||||||| ||||||||||||||||||||| |||  ||| ||||||||||||||    
T  17048035 aaaagcctaaaaaatcttttagggggactaaa-tcaaatgttggtatatttaaggggatcattcacttatttaaccct 17048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 2846624 - 2846573
Alignment:
Q  56 gactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||||||||||| |||||||| | |||| |||||||||||||||||    
T  2846624 gactaaaatcaaatgttgatatatttagggggaccatttacttatttaaccc 2846573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 2858461 - 2858411
Alignment:
Q  56 gactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||||||||||||| |||||||| | |||| ||||||||||||||||    
T  2858461 gactaaaatcaaatgttgatatatttagggggaccatttacttatttaacc 2858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 29673698 - 29673791
Alignment:
Q  10 tgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaa 104  Q
    |||||| |||||||| ||||||||  | |||| |||||||||| |  |||||||||||||||| ||||||||| | | || ||||||||||||||    
T  29673698 tgaaaatttttggagggaccaaaac-cttaagaaatattttagaggaactaaaatcaaatgtttgtatatttaggggaaccatttacttatttaa 29673791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 12272564 - 12272527
Alignment:
Q  45 tattttagggagactaaaatcaaatgttggtatattta 82  Q
    |||||||| |||||||||||||||||||||||||||||    
T  12272564 tattttagagagactaaaatcaaatgttggtatattta 12272527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Original strand, 38299124 - 38299200
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    |||||||||| ||| ||||||| |  ||||||||| ||| ||||||||||||||   | ||||||||||||||||||    
T  38299124 aaaagcctaaagaaaattttagaggaactaaaatcgaatattggtatatttaaggaaaatatttacttatttaaccc 38299200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 17047952 - 17047859
Alignment:
Q  9 atgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatattta-agaggactatttacttattta 103  Q
    |||||||||||| ||| |||||||| |  ||| ||||||||||||  | |||||||||||| |||||||||||| ||| |||||||||| ||||||    
T  17047952 atgaaaaattttagagggaccaaaa-gtttaaagaatattttaggagggctaaaatcaaatattggtatatttagaga-gactatttacatattta 17047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 5161094 - 5161159
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    |||||||||||| || ||||||||||||||  |||||||||||  |  |||||||||||||||||||    
T  5161094 aatattttaggg-gagtaaaatcaaatgttaatatatttaagaaaatcatttacttatttaacccta 5161159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 33626007 - 33626057
Alignment:
Q  58 ctaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||| ||| |||||||| |||||  ||||||||||||||||||    
T  33626007 ctaaaatcaaatattgatatatttaggaggatcatttacttatttaaccct 33626057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 11929342 - 11929289
Alignment:
Q  53 ggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    ||||||| || ||||||||||||||||||| | ||||||||| || ||||||||    
T  11929342 ggagactgaattcaaatgttggtatatttagggggactattttctcatttaacc 11929289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 108
Target Start/End: Complemental strand, 38900286 - 38900222
Alignment:
Q  43 aatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||||||||| |||||||||| |||| ||||||||||||   |||  ||||||||||||||||||    
T  38900286 aatattttagg-agactaaaataaaatattggtatatttagagggaaaatttacttatttaaccct 38900222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 2344570 - 2344507
Alignment:
Q  42 gaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||||||||| || ||||||||||||||| || |||||| | | ||||| |||||||||||||||    
T  2344570 gaatattttaagg-gactaaaatcaaatgatgatatattaagggggactgtttacttatttaacc 2344507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 2846957 - 2847008
Alignment:
Q  57 actaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||||||||||| ||| || || ||| |||||||||||||||||||    
T  2846957 actaaaatcaaatgttggtttatatagga-gaccatttacttatttaacccta 2847008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 2858794 - 2858845
Alignment:
Q  57 actaaaatcaaatgttggtatatttaagaggactatttacttatttaacccta 109  Q
    ||||||||||||||||||| ||| || || ||| |||||||||||||||||||    
T  2858794 actaaaatcaaatgttggtttatatagga-gaccatttacttatttaacccta 2858845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 30387 - 30310
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||| |||| ||||||||  |||||||||||||||||||| ||||||||| | |||| ||| ||||||||||||||    
T  30387 aaaagcttaagtaatatttttaggagactaaaatcaaatgttagtatatttatggggaccattcacttatttaaccct 30310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 30711 - 30802
Alignment:
Q  3 tgatggatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttac 96  Q
    ||||||||||||| |||| ||| ||||||||| | |||  ||||||||  ||||||||||||||||||||  ||||||||||  ||||||||||    
T  30711 tgatggatgaaaatttttagag-gaccaaaaa-cttaaataatatttttaggagactaaaatcaaatgttattatatttaaggagactatttac 30802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 63983 - 64082
Alignment:
Q  8 gatgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccc 107  Q
    ||||||||||||  ||| ||| ||||| |||||  ||||||||||||  |||||||| ||||||||||||||||| |  ||||||||||| |||||||||    
T  63983 gatgaaaaatttgagagggactaaaaa-cctaaataatattttaggggaactaaaattaaatgttggtatatttagggagactatttactgatttaaccc 64081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 63921 - 63826
Alignment:
Q  10 tgaaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    |||||||||||  |||||||||||| ||||  ||| |||||| || ||||||||||||||||| |||||||||  || | ||||| |||||||||||||    
T  63921 tgaaaaattttaaagagaccaaaaa-cctatagaaaattttatgg-gactaaaatcaaatgtt-gtatatttagaagtagtattttcttatttaaccct 63826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 6347 - 6273
Alignment:
Q  31 aaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaacc 106  Q
    |||| ||||| |||||||||||  ||| | ||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  6347 aaaaccctaaagaatattttagaaagattgaaatcaaatgttggtatatttaaga-gaccatttatttatttaacc 6273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 11608 - 11684
Alignment:
Q  8 gatgaaaaattttggagag--accaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaa 83  Q
    ||||||| ||||| |||||  |||||||| |||||| |||||||||| | |||||||||||||| || ||||||||||    
T  11608 gatgaaatattttagagagggaccaaaaa-cctaagaaatattttagagtgactaaaatcaaatattcgtatatttaa 11684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 11103 - 11009
Alignment:
Q  12 aaaaattttggagagaccaaaaagcctaaggaatattttagggagactaaaatcaaatgttggtatatttaagaggactatttacttatttaaccct 108  Q
    ||||| ||| ||||||| ||||| | ||| ||||||||||  |  ||||||||||| |||| ||||||||| ||  |||||||||||||||||||||    
T  11103 aaaaaatttagagagactaaaaatc-taaagaatattttaaaggaactaaaatcaactgttagtatattta-gaatactatttacttatttaaccct 11009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 175548 - 175592
Alignment:
Q  38 taaggaatattttagggagactaaaatcaaatgttggtatattta 82  Q
    ||||||| ||||||| ||||||||||| ||| |||||||||||||    
T  175548 taaggaaaattttagagagactaaaataaaaagttggtatattta 175592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University