View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7689_high_9 (Length: 448)

Name: NF7689_high_9
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7689_high_9
NF7689_high_9
[»] chr3 (14 HSPs)
chr3 (283-437)||(23501218-23501373)
chr3 (283-437)||(23449455-23449610)
chr3 (17-110)||(23501370-23501463)
chr3 (297-437)||(23456219-23456355)
chr3 (268-437)||(23406934-23407101)
chr3 (17-82)||(23360756-23360821)
chr3 (17-82)||(23367596-23367661)
chr3 (308-437)||(23388574-23388699)
chr3 (297-437)||(23465588-23465726)
chr3 (341-437)||(23354084-23354180)
chr3 (332-437)||(23480945-23481050)
chr3 (28-118)||(23389292-23389383)
chr3 (17-79)||(23458856-23458918)
chr3 (17-94)||(23436265-23436346)
[»] scaffold0570 (1 HSPs)
scaffold0570 (336-437)||(9477-9578)
[»] scaffold0022 (2 HSPs)
scaffold0022 (25-117)||(167239-167335)
scaffold0022 (332-437)||(167390-167492)
[»] scaffold0201 (2 HSPs)
scaffold0201 (298-437)||(13762-13888)
scaffold0201 (17-82)||(16086-16158)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 283 - 437
Target Start/End: Complemental strand, 23501373 - 23501218
Alignment:
Q  283 ttaaacattacatcttttt-attgtagcattgtgattagtggcctaattggtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctt 381  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23501373 ttaaacattacttcttttttattgtagcattgtgattagtggcctaatcagtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctt 23501274  T
Q  382 tttcctctatagtttcttctgatgtggtgactcagaaaaaatatgacgtttttctt 437  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  23501273 tttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacatttttctt 23501218  T

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Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 283 - 437
Target Start/End: Complemental strand, 23449610 - 23449455
Alignment:
Q  283 ttaaacattacatcttttt-attgtagcattgtgattagtggcctaattggtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctt 381  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  23449610 ttaaacattacttcttttttattgtagcattgtgattagtggcctaatcagtgcaggcacttggaattcataactgccgtgccgaaaatgagcagtgcct 23449511  T
Q  382 tttcctctatagtttcttctgatgtggtgactcagaaaaaatatgacgtttttctt 437  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23449510 tttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacgtttttctt 23449455  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 23501463 - 23501370
Alignment:
Q  17 catagaatttcaaatcaataaattgataaaattagtataggccataccttctgttggcaaatatttcaaattaatcttcatatcttttaattaa 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  23501463 catagaatttcaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatatttcaaattaatcttcatatctgttaattaa 23501370  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 23456355 - 23456219
Alignment:
Q  297 tttttattgtagcattgtgattagtggcctaattggtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctttttcctctatagttt 396  Q
    |||||||||||||||||||||||||||| ||    ||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||  ||    
T  23456355 tttttattgtagcattgtgattagtggctta----gtgcaggcatttggaaatcataaccgccgcgcagaaaatgagcagtgctttttcctctatatctt 23456260  T
Q  397 cttctgatgtggtgactcagaaaaaatatgacgtttttctt 437  Q
    ||||| |||||| | ||| ||||||||||||||||||||||    
T  23456259 cttcttatgtggggcctccgaaaaaatatgacgtttttctt 23456219  T

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Target: chr3; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 268 - 437
Target Start/End: Complemental strand, 23407101 - 23406934
Alignment:
Q  268 gtatcaagaacacatttaaacattacatctttttattgtagcattgtgattagtggcctaattggtgcaggcacttggaattcataa--ctgccgcgccg 365  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    || || |||||||| |||||||||||   |  || |  |    
T  23407101 gtatcaagaacacatttaaacattacttttttttattgtagcattgtgattagtggc----ttagtacaggcactcggaattcataatcgtcacgaggag 23407006  T
Q  366 aaaatgagcagtgctttttcctctatagtttcttctgatgtggtgactcagaaaaaatatgacgtttttctt 437  Q
    |||||||||||||||||||||||||||  |||||||||||||||  || ||||||||||||| |||||||||    
T  23407005 aaaatgagcagtgctttttcctctatatcttcttctgatgtggtccctaagaaaaaatatgaagtttttctt 23406934  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 23360821 - 23360756
Alignment:
Q  17 catagaatttcaaatcaataaattgataaaattagtataggccataccttctgttggcaaatattt 82  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  23360821 catagaatttgaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattt 23360756  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 23367661 - 23367596
Alignment:
Q  17 catagaatttcaaatcaataaattgataaaattagtataggccataccttctgttggcaaatattt 82  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  23367661 catagaatttgaaatcaataaattgataaaattagtttaggccataccttctgttcgcaaatattt 23367596  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 308 - 437
Target Start/End: Complemental strand, 23388699 - 23388574
Alignment:
Q  308 gcattgtgattagtggcctaattggtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctttttcctctatagtttcttctgatgtg 407  Q
    ||||||||||||||||| ||    |||||||||||||||||||||||   ||| || ||||||||||||||||||||||||| ||   |||||   ||||    
T  23388699 gcattgtgattagtggctta----gtgcaggcacttggaattcataatctccgagcagaaaatgagcagtgctttttcctctgtatcctcttcctctgtg 23388604  T
Q  408 gtgactcagaaaaaatatgacgtttttctt 437  Q
    | | ||||||||||||||||||||||||||    
T  23388603 gcgcctcagaaaaaatatgacgtttttctt 23388574  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 437
Target Start/End: Complemental strand, 23465726 - 23465588
Alignment:
Q  297 tttttattgtagcattgtgattagtggcctaattggtgcaggcacttggaattcataactgccgcgccga--aaatgagcagtgctttttcctctatagt 394  Q
    |||||||||||||||||||||||||||| ||    || ||||| || |||||||||||| | | ||  ||  ||||||||||||||||||||||| ||      
T  23465726 tttttattgtagcattgtgattagtggctta----gtacaggccctgggaattcataaccgtcacgaggagaaaatgagcagtgctttttcctctgtatc 23465631  T
Q  395 ttcttctgatgtggtgactcagaaaaaatatgacgtttttctt 437  Q
    |||||||||||||||  || ||||||||||||| |||||||||    
T  23465630 ttcttctgatgtggtccctaagaaaaaatatgaggtttttctt 23465588  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 341 - 437
Target Start/End: Complemental strand, 23354180 - 23354084
Alignment:
Q  341 cttggaattcataa-ctgccgcgccgaaaatgagcagtgctttttcctctatagtttcttctgatgtggtgactcagaaaaaatatgacgtttttctt 437  Q
    |||||||||||||| |||| |||| ||||||||  ||||||||||||||||||  |||||||||||||| | ||| ||||||||||||||||||||||    
T  23354180 cttggaattcataatctgc-gcgcagaaaatgactagtgctttttcctctatatcttcttctgatgtggggcctccgaaaaaatatgacgtttttctt 23354084  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 332 - 437
Target Start/End: Complemental strand, 23481050 - 23480945
Alignment:
Q  332 gtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctttttcctctatagtttcttctgatgtggtgactcagaaaaaatatgacgtt 431  Q
    |||||||||||||||||||||||   |   |  ||||||||||||||||||||| || |||  |||||||||||||||| ||| ||||||||||||||||    
T  23481050 gtgcaggcacttggaattcataatcactaggtagaaaatgagcagtgctttttcttccatatcttcttctgatgtggtgcctctgaaaaaatatgacgtt 23480951  T
Q  432 tttctt 437  Q
    ||||||    
T  23480950 tttctt 23480945  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 118
Target Start/End: Complemental strand, 23389383 - 23389292
Alignment:
Q  28 aaatcaataaattgataaaa-ttagtataggccataccttctgttggcaaatatttcaaattaatcttcatatcttttaattaatactcaaa 118  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||| ||||||||||||| |||||| ||||||||| | |||||||| |||||||    
T  23389383 aaattaataaatggataaaaattagtttaggccataccttctattggcaaatattttaaattagtcttcatatttgttaattaaaactcaaa 23389292  T

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Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 23458918 - 23458856
Alignment:
Q  17 catagaatttcaaatcaataaattgataaaattagtataggccataccttctgttggcaaata 79  Q
    |||||||||| |||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  23458918 catagaatttgaaataaataaattgataaaattagtttaggccataccttctgttggaaaata 23458856  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 23436346 - 23436265
Alignment:
Q  17 catagaatttcaaatcaataaattgataaaattagt----ataggccataccttctgttggcaaatatttcaaattaatctt 94  Q
    |||||| |||||||||||||||||||||||||||||    |  | ||||||||| ||||| |||||||||||||||| ||||    
T  23436346 catagattttcaaatcaataaattgataaaattagttttgactgaccataccttttgttgacaaatatttcaaattagtctt 23436265  T

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Target: scaffold0570 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 336 - 437
Target Start/End: Original strand, 9477 - 9578
Alignment:
Q  336 aggcacttggaattcataactgccgcgccgaaaatgagcagtgctttttcctctatagtttcttctgatgtggtgactcagaaaaaatatgacgtttttc 435  Q
    |||||||||||||||||||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  9477 aggcacttggaattcataacagctgtgccgaaaatgagcagtgctatttcctctatagtttcttctgatgtggtgcctcagaaaaaatatgacatttttc 9576  T
Q  436 tt 437  Q
    ||    
T  9577 tt 9578  T

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Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 167239 - 167335
Alignment:
Q  25 ttcaaatcaataaattgataaaattagtataggccataccttctgttggcaaatat----ttcaaattaatcttcatatcttttaattaatactcaa 117  Q
    |||||||||||||||||| | | ||||| ||||||||||||| |||||||||||||    || |||||| ||||||||| | |||||||| ||||||    
T  167239 ttcaaatcaataaattgacagacttagtttaggccataccttttgttggcaaatattttatttaaattagtcttcatatttcttaattaaaactcaa 167335  T

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Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 437
Target Start/End: Original strand, 167390 - 167492
Alignment:
Q  332 gtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctttttcctctatagtttcttctgatgtggtgactcagaaaaaatatgacgtt 431  Q
    |||||| | ||||||||| ||||  || |||| |||||||||||||| ||||||||||   || ||| ||||||||| | || ||||||||||||| ||     
T  167390 gtgcagtcccttggaattgataaacgctgcgcagaaaatgagcagtgttttttcctct---gtatctactgatgtggggcctaagaaaaaatatgatgtg 167486  T
Q  432 tttctt 437  Q
    ||||||    
T  167487 tttctt 167492  T

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Target: scaffold0201 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 437
Target Start/End: Complemental strand, 13888 - 13762
Alignment:
Q  298 ttttattgtagcattgtgattagtggcctaattggtgcaggcacttggaattcataactgccgcgccgaaaatgagcagtgctttttcctctatagtttc 397  Q
    ||||||||| ||||||||||| ||||| ||    |||||||||||||||||||||||| | |         | |||||||||||||||||| |||  |||    
T  13888 ttttattgttgcattgtgatttgtggctta----gtgcaggcacttggaattcataaccgtc---------acgagcagtgctttttcctccatatcttc 13802  T
Q  398 ttctgatgtggtgactcagaaaaaatatgacgtttttctt 437  Q
    ||||||||||||| | | |||||||||||| |||||||||    
T  13801 ttctgatgtggtgccaccgaaaaaatatgatgtttttctt 13762  T

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Target: scaffold0201; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 16158 - 16086
Alignment:
Q  17 catagaatttcaaatcaataaa-----ttgataaaattagtataggcc--ataccttctgttggcaaatattt 82  Q
    ||||||||||||||||||||||     |||||||||||||| ||||||  |||||||||||||||||||||||    
T  16158 catagaatttcaaatcaataaaataaattgataaaattagtttaggccatataccttctgttggcaaatattt 16086  T

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