View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_1 (Length: 1130)
Name: NF7689_low_1
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 496
Target Start/End: Original strand, 38120570 - 38121055
Alignment:
| Q |
11 |
gagatgaagcaaagggaatgtagaagatgatgcaacgatggtgtggtgaagtgatgaagcagaataactatgttaattaataccaaagttgtgctaatga |
110 |
Q |
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| T |
38120570 |
gagatgaagcaaagggaatgtagaagatgatgcaacgatggtgtggtgaagtgatgaagcagaataactatgttaattaataccaaagttgtgctaatga |
38120669 |
T |
|
| Q |
111 |
tactcatgactatgcaatgcaactattattnnnnnnnctaaacgttttgtaaccactgcaagaaaagtaaacatttgaagaggcaaatgtgatattatta |
210 |
Q |
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| T |
38120670 |
tactcatgactatgcaatgcaactattattaagaaaactaaacgttttgtaaccactgcaagaaaagtaaacatttgaagaggcaaatgtgatattatta |
38120769 |
T |
|
| Q |
211 |
ttgtgtcttatttatactaaaggagttggtttcggttcagcttcaacttctttgttaagttaccgttttgcaattgaaggttagccaccaatcatattca |
310 |
Q |
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| T |
38120770 |
ttgtgtcttatttatactaaaggagttggtttcggttcagcttcaacttctttgttaagttaccgttttgcaattgaaggttagccaccaatcatattca |
38120869 |
T |
|
| Q |
311 |
tcatgatatcacacttactataaatagaatcatgctatctttctctttaaccaaacactttaccctcttcattatctttggttacttcacactgtttttc |
410 |
Q |
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| T |
38120870 |
tcatgatatcacacttactataaatagaatcatgctatctttctctttaaccaaacactttaccctcttcattatctttggttacttcacactgtttttc |
38120969 |
T |
|
| Q |
411 |
ttttcagtaagaacaaagcacaagtttggttagttcaaactctatttctcttcgtcttcctagctctttttccttaattttatttt |
496 |
Q |
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| T |
38120970 |
ttttcagtaagaacaaagcacaagtttggttagttcaaactctatttctcttcgtcttcctagctctttttccttaattttatttt |
38121055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 667 - 1113
Target Start/End: Original strand, 38121272 - 38121718
Alignment:
| Q |
667 |
gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg |
766 |
Q |
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| T |
38121272 |
gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg |
38121371 |
T |
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| Q |
767 |
ttttcgaaaatattctcggatgttttcgtttgtgtgatgaatcttgtgttatgttgaatggnnnnnnnagcgttattctttgactttaggattttcacat |
866 |
Q |
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| T |
38121372 |
ttttcgaaaatattctcgtatgttttcgtttgtgtgatgaatcttgtgttatgttgaatggtttttttagcgttattctttgactttaggattttcacat |
38121471 |
T |
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| Q |
867 |
cactgcttcatgcttttggggttttgcacttactatttgttttatgcttttgagtttttgtgtgtgctgatttaatgatcaatttagtatatacctaata |
966 |
Q |
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| T |
38121472 |
cactgcttcatgcttttggggttttgcacttactatttgttttatgcttttgagtttttgtgtgtgctgatttaatgatcaatttagtatatacctaata |
38121571 |
T |
|
| Q |
967 |
gactaatacttattacttgtgatatttattcagaatatgagttcacaagagaacaaagaatgtttgcccccaccacctcccattgttccacccaatgtta |
1066 |
Q |
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| T |
38121572 |
gactaatacttattacttgtgatatttattcagaatatgagttcacaagagaacaaagaatgtttgcccccaccacctcccattgttccacccaatgtta |
38121671 |
T |
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| Q |
1067 |
aaccaataaagatagaacaggagcatttaaagaagaagcttcctact |
1113 |
Q |
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| T |
38121672 |
aaccaataaagatagaacaggagcatttaaagaagaagcttcctact |
38121718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 488 - 576
Target Start/End: Original strand, 38121094 - 38121182
Alignment:
| Q |
488 |
ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag |
576 |
Q |
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| T |
38121094 |
ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag |
38121182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1007 - 1052
Target Start/End: Original strand, 38113081 - 38113126
Alignment:
| Q |
1007 |
gttcacaagagaacaaagaatgtttgcccccaccacctcccattgt |
1052 |
Q |
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| T |
38113081 |
gttcacaggagaacgaagaatgtttacccccgccacctcccattgt |
38113126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1033 - 1108
Target Start/End: Original strand, 14914008 - 14914083
Alignment:
| Q |
1033 |
cccccaccacctcccattgttccacccaatgttaaaccaataaagatagaacaggagcatttaaagaagaagcttc |
1108 |
Q |
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| T |
14914008 |
cccccaccacctcccactgttcctcgaaatgttaaaccagtaattattgaacaagagcatgtaaagaagaagcttc |
14914083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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