View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_10 (Length: 451)
Name: NF7689_low_10
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 9959679 - 9960092
Alignment:
| Q |
18 |
gtaaatacatgccattccccaccttaagtttcatttttattttgatgaaagcaccaaaatataaaagacagcaccttaaatttcatttaataacaaagaa |
117 |
Q |
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| T |
9959679 |
gtaaatacatgccattccccactttaagtttcatttttattttgatgaaagcactaaaa------agacaacaccttaagtttcatttaataacaaagaa |
9959772 |
T |
|
| Q |
118 |
aaacaatcttattttcgatggcttagttctgtaataacgatgcctatgtttcaaatataatcaagcattactattctccatgaaatcnnnnnnngttcac |
217 |
Q |
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| T |
9959773 |
aaacaatcttattttcgaaggcttagttctgtaataacgatgcctatgtttcaaatataatcaagcattactattctccatgaaatcaaaaaaagttcac |
9959872 |
T |
|
| Q |
218 |
ctcagtgtaccataaatttgtttaatggttgccttcatacacttttttcttttatctgaaatgagatgacaggatcaacattttgtccaacaaagttttc |
317 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9959873 |
ctcagtgtaccataaatttgcttaatggttgctttcatacacttttttcttttatctgagatgagatgacaggatcaacattttgtccaacaaagttttc |
9959972 |
T |
|
| Q |
318 |
tttctaacctccaagaggaaagcaagtgtccaaccttaataattggtcgtgataatacttatttccctttcggctagcactagttcatgtaacccctcag |
417 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9959973 |
tttctaacctccaagaggaaagcaagtgtccaacctcaataattg---gtaataatacttatttccctttcggctagcactagttcatgtaactcctcaa |
9960069 |
T |
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| Q |
418 |
tacttttttaccttctcattctt |
440 |
Q |
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|||||||||| |||||||||||| |
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| T |
9960070 |
tacttttttagcttctcattctt |
9960092 |
T |
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