View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_11 (Length: 450)
Name: NF7689_low_11
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 257 - 450
Target Start/End: Original strand, 37004787 - 37004980
Alignment:
| Q |
257 |
aatttctcatttttaagaaatgaaaatatcgaaaacgtgcttggtttgaccaattttaattatcagttcataaaatatttcataatattgagaggcctaa |
356 |
Q |
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| T |
37004787 |
aatttctcatttttaagaaatgaaaatatcgaaaacgtgcttggtttgaccaattttaattatcagttcataaaatatttcataatattgagaggcctaa |
37004886 |
T |
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| Q |
357 |
tccacaatagaaatacagtgatataaatagattcatcacacaacaattagcatttattttgatcatgtagtagttctaaagcatatagtaaact |
450 |
Q |
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| T |
37004887 |
tccacaatagaaatacagtgatataaatagattcatcacacaacaattagcatttattttgatcaattagtagttctaaaacatatagtaaact |
37004980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 37004548 - 37004706
Alignment:
| Q |
18 |
tatttttgttctttttccacaagaatttgctttctgaagactttctttacgagtttgaaggggaggagatgactttgcgtaaaataatgaagtaaaggaa |
117 |
Q |
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| T |
37004548 |
tatttttgttcttttttcacaagaatttgctttctgaagactttctttacgagtttgaaggggaggagatgactttgcgtaaaataatgaagtaaaggaa |
37004647 |
T |
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| Q |
118 |
aattgaagaaatgataatccctcaacttgagtatgagttgacgtaaaaactctagggtc |
176 |
Q |
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| T |
37004648 |
aatggaagaaatgacaatccctcaacttgagtatgagttgacgtaaaaactctagggtc |
37004706 |
T |
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