View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_12 (Length: 448)
Name: NF7689_low_12
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_12 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 7774440 - 7774864
Alignment:
| Q |
18 |
ccatcaaccttcacctctttgacatcaataaaatattcaactgaaggaacaccttgaatagaaactgcacctgttgaaacgggattgacaatgagtggtg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
7774440 |
ccatcaaccttcacctctttgacatcaataaaatattcaactgaaggaacaccttgaacagaaactgcacctgttgaaacgggattgacaatgagcggtg |
7774539 |
T |
|
| Q |
118 |
tagtttgaacaaatttggacaattccttaaaagggtcaccaccaattgatccaacaagcaagttagtgaatccttgtttgtttgaagaaggtaaacaaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7774540 |
tagtttgaacaaatttggacaattccttaaaagggtcaccgccaattgatccaacaagcaagttagtgaatccttgtttgtttgaagaaggtaaacaaag |
7774639 |
T |
|
| Q |
218 |
agagaatttgggtggaagcttgtttttcaatgcaagttgtgttggtagtgaaaggtttgatcttgaaagaccaataattcctttggtattttttggcaag |
317 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||| |
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| T |
7774640 |
agagaatttgtgtggaagcttgtttttcaatgcaagttgtgttggtagtgaaaggtttgatcttgaaagaccaataattcctttagtgatttttggtaag |
7774739 |
T |
|
| Q |
318 |
ccattgagtggtgaatcctctccggtgaatgaaggaagtctatcaatatcaatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatga |
417 |
Q |
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|| |||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
7774740 |
ccgttgagtggtgaatcctctccagtgaatgatggaagtctatcaatgtcaatgcaacttgagagcaagccagaaactttttgttgtgaaatgaaaatga |
7774839 |
T |
|
| Q |
418 |
aatcttcaccaaggccaccaccaaa |
442 |
Q |
| |
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| T |
7774840 |
aatcttcaccaaggtcaccaccaaa |
7774864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 34 - 442
Target Start/End: Original strand, 7767129 - 7767537
Alignment:
| Q |
34 |
ctttgacatcaataaaatattcaactgaaggaacaccttgaatagaaactgcacctgttgaaacgggattgacaatgagtggtgtagtttgaacaaattt |
133 |
Q |
| |
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|||| |||||||| |||||||||| ||||| | ||||||||| ||||| |||||||||| || ||||| ||||||||||| || |||||||||||||| |
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| T |
7767129 |
ctttcacatcaatgaaatattcaattgaagaagcaccttgaacagaaatagcacctgttgggacaggattaacaatgagtggcgtggtttgaacaaattt |
7767228 |
T |
|
| Q |
134 |
ggacaattccttaaaagggtcaccaccaattgatccaacaagcaagttagtgaatccttgtttgtttgaagaaggtaaacaaagagagaatttgggtgga |
233 |
Q |
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| T |
7767229 |
ggacaattcatgaaaagggtctccagcaattgatccaacaagcaagttagtgaatccttgtttgtttgaagaaggcaaacaaagagagaattttggttga |
7767328 |
T |
|
| Q |
234 |
agcttgtttttcaatgcaagttgtgttggtagtgaaaggtttgatcttgaaagaccaataattcctttggtattttttggcaagccattgagtggtgaat |
333 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| || |||||||| ||||||||||||||||||| |
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| T |
7767329 |
agcttgtttttcaatgcaagttgagttggtagtgaaaggtttgatcttgcaagaccaaaaattcctttagtgttttttggtaagccattgagtggtgaat |
7767428 |
T |
|
| Q |
334 |
cctctccggtgaatgaaggaagtctatcaatatcaatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaaggcc |
433 |
Q |
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| || | | | || | || || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7767429 |
catcctcagcggtagatgaaaatccatcaatatcaatgcaacttgagagtaagccagaaactttttgttgagaaatgaaaatgaaatcttcaccaaggcc |
7767528 |
T |
|
| Q |
434 |
accaccaaa |
442 |
Q |
| |
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||||||||| |
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| T |
7767529 |
accaccaaa |
7767537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 41 - 403
Target Start/End: Complemental strand, 11618 - 11263
Alignment:
| Q |
41 |
atcaataaaatattcaactgaaggaacaccttgaatagaaactgcacctgttgaaacgggattgacaatgagtggtgtagtttgaacaaatttggacaat |
140 |
Q |
| |
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|||||| ||||||||| ||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11618 |
atcaatgaaatattcatttgaaggaacaccttgaataaaaacagcacctgttgaaataggattgacaatgagtggtgtggtttgaacaaatttggacaat |
11519 |
T |
|
| Q |
141 |
tccttaaaagggtcaccaccaattgatccaacaagcaagttagtgaatccttgtttgtttgaagaaggtaaacaaagagagaatttgggtggaagcttgt |
240 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
11518 |
tccttaatagggtcaccaccat---atccaacaagcaagtttgtgaatccttgtttgtttgaggaaggtaaacaaagagagaatttaggtggaagcttgt |
11422 |
T |
|
| Q |
241 |
ttttcaatgcaagttgtgttggtagtgaaaggtttgatcttgaaagaccaataattcctttggtattttttggcaagccattgagtggtgaatcctctcc |
340 |
Q |
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|| |||| ||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| | | |
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| T |
11421 |
ttctcaaggcaagttgtgt----agtgaatattttgatcttgcaagaccaataattcctttggtatttttaggtaagccattgagtggtgaatcattgtc |
11326 |
T |
|
| Q |
341 |
ggtgaatgaaggaagtctatcaatatcaatgcaacttgagagtaagccagaaactttttgttg |
403 |
Q |
| |
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||||||||| |||| | |||||| ||||| ||| | || || |||||| ||||||||||||| |
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| T |
11325 |
ggtgaatgacggaaaaccatcaatgtcaatacaagtagaaagcaagccaaaaactttttgttg |
11263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 121 - 442
Target Start/End: Original strand, 21268218 - 21268539
Alignment:
| Q |
121 |
tttgaacaaatttggacaattccttaaaagggtcaccaccaattgatccaacaagcaagttagtgaatccttgtttgtttgaagaaggtaaacaaagaga |
220 |
Q |
| |
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|||||| ||||||||||||||| | ||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21268218 |
tttgaataaatttggacaattcatgaaaagggtctccaccaactgatccaacaagtaagttagtgaatccttgtttgtttgaagaaggcaaacaaagaga |
21268317 |
T |
|
| Q |
221 |
gaatttgggtggaagcttgtttttcaatgcaagttgtgttggtagtgaaaggtttgatcttgaaagaccaataattcctttggtattttttggcaagcca |
320 |
Q |
| |
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|||| | ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| |||||| |
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| T |
21268318 |
gaatctaggttgaaccttgtttttcaatgcaagttgagttggtagtgaaaggtttgatcttgcaagaacaataattcctttggtgttttttggtaagcca |
21268417 |
T |
|
| Q |
321 |
ttgagtggtgaatcctctccggtgaatgaaggaagtctatcaatatcaatgcaacttgagagtaagccagaaactttttgttgcgaaatgaaaatgaaat |
420 |
Q |
| |
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|||| | |||||| || || ||||| ||||||||| | | |||||||| ||||| |||||| ||||||||||||| ||||||||||| |||| |
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|
| T |
21268418 |
ttgaattatgaatcactgccagttaatgatggaagtctactcctgtgaatgcaacaagagagcaagccataaactttttgttgtgaaatgaaaatcaaat |
21268517 |
T |
|
| Q |
421 |
cttcaccaaggccaccaccaaa |
442 |
Q |
| |
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||||| ||||| ||||||||| |
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| T |
21268518 |
cttcatcaaggttaccaccaaa |
21268539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 131 - 324
Target Start/End: Complemental strand, 54302937 - 54302743
Alignment:
| Q |
131 |
tttggacaattccttaaaagggtcaccaccaattgatccaacaagcaagttagtgaatccttgtttgtttgaagaaggtaaacaaagagag-aatttggg |
229 |
Q |
| |
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|||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||||||||| ||||| || |
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|
| T |
54302937 |
tttggacaattcaagaaaagggtctccaccaacgaatccaacaagtaagttagtgaatctttgtttgtttgaagaaggcaaacaaagagaggaatttagg |
54302838 |
T |
|
| Q |
230 |
tggaagcttgtttttcaatgcaagttgtgttggtagtgaaaggtttgatcttgaaagaccaataattcctttggtattttttggcaagccattga |
324 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| | | |||||||||| |||| |||||||||||||||| |||| ||| |||||||||| |
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| T |
54302837 |
tggaagcttgtttttcaatgcaagttgtgttggtagtaatatgtttgatcttacaagaacaataattcctttggtgttttctggtaagccattga |
54302743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 54302687 - 54302640
Alignment:
| Q |
384 |
aagccagaaactttttgttgcgaaatgaaaatgaaatcttcaccaagg |
431 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
54302687 |
aagccagaaactttttgttgtgaaatgaaaattaaatcttcatcaagg |
54302640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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