View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_17 (Length: 428)
Name: NF7689_low_17
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 580028 - 580442
Alignment:
| Q |
1 |
aatgggaacgtcgttggacttccatcaccaaactctccttacatgattatcaactttcttttgatttcactatcaggcttaaaagaatgcagaattttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
580028 |
aatgggaacgtcgttggacttccatcaccaaactctccttacatgattatcaactttcttttgatttcactatcaggcttaaaagaatgcagaatttttc |
580127 |
T |
|
| Q |
101 |
cacctttgttgacagagcgcttcttcttaacgatagtttagccatggatcacgtttctctttttctctgtactttgtataattggtcttttctagattca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| |
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| T |
580128 |
cacctttgttgacagagcgcttcttcttaacgatagtttagccatggatcacgtttctcttttcctctttactttgtataattggtctcttctagattca |
580227 |
T |
|
| Q |
201 |
tggttatcaaacatctttaagcggagagttaaaattcttcaaatccattcnnnnnnncaaatcccattctccgttctcgcttctcattctcttttcaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580228 |
tggttatcaaacatctttaagcggagagttaaaattcttcaaatccattctttttttcaaatcccattctccgttctcgcttctcattctcttttcaata |
580327 |
T |
|
| Q |
301 |
actttttgttgttagaagaattggagttgcttactgattccatttcctttattaatgttcctatgtacgatgaagaattgaaattgcttcgaaattcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
580328 |
actttttgttgttagaagaattggagttgcttactgattccatttcctttattaatgttcctatgtacgatgaagaattgaaattgcttcgaaattcttt |
580427 |
T |
|
| Q |
401 |
taattccgttgatgt |
415 |
Q |
| |
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||||||||||||||| |
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| T |
580428 |
taattccgttgatgt |
580442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 1213863 - 1213916
Alignment:
| Q |
279 |
gcttctcattctcttttcaataactttttgttgttagaagaattggagttgctt |
332 |
Q |
| |
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|||||| ||||||||||||| ||||||||| | |||||||||||||| |||||| |
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| T |
1213863 |
gcttctgattctcttttcaaaaactttttgctattagaagaattggaattgctt |
1213916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 331
Target Start/End: Complemental strand, 8193171 - 8193030
Alignment:
| Q |
190 |
ttctagattcatggttatcaaacatctttaagcggagagttaaaattcttcaaatccattcnnnnnnncaaatcccattctccgttctcgcttctcattc |
289 |
Q |
| |
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|||||||| |||||| || |||||||| || || |||||||||| ||||| ||||||||| ||| || ||||||||||||| |||||| |||| |
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| T |
8193171 |
ttctagatatatggttctctaacatcttcaaccgcagagttaaaaatcttcgaatccattcgcagtttcaactctcattctccgttcttgcttctgattc |
8193072 |
T |
|
| Q |
290 |
tcttttcaataactttttgttgttagaagaattggagttgct |
331 |
Q |
| |
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||| || || || || | || |||||||||||||| ||||| |
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| T |
8193071 |
tctatttaaaaatttcatattattagaagaattggaattgct |
8193030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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