View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_18 (Length: 415)
Name: NF7689_low_18
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 300
Target Start/End: Complemental strand, 622091 - 621805
Alignment:
| Q |
10 |
aagaatatatttgaagcaattgaacattcctatacaagtggatatccagtgtgtcaaaagggtcgatccaccattgaactgcatgaaaaatgtacattaa |
109 |
Q |
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| T |
622091 |
aagaaaatatttgaagcaattgaacattcctatacaagtggatatccagtgtgtcaaaagggtcgatccaccattgaactgcatgaaaaatgtacattaa |
621992 |
T |
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| Q |
110 |
agttttcaacgttcaattccttgattgacaattaataaataacaatcacaacatgggcttcacttgtgtgacgcaagacggatgagattggtgccctaac |
209 |
Q |
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| T |
621991 |
agttttcaacgttcaattccttgattgacaat----aaataacaatcacaacatgggcttcacttgtgtgacgcaagacggatgagattggtgccctaac |
621896 |
T |
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| Q |
210 |
caaacatacagaaactgctttagaatagcctgcttgctcaacttttccttggtggctacaaaagttaaaggaaacgtatacttgcaatctt |
300 |
Q |
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| T |
621895 |
caaacatacagaaactgctttaggatagcctgcttgctcaacttttccttggtggctacaaaagttaaaggaaacgtatacttgcaatctt |
621805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 388
Target Start/End: Complemental strand, 621750 - 621717
Alignment:
| Q |
355 |
caagtcatgttgaacaacttgtataggaatattg |
388 |
Q |
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| T |
621750 |
caagtcatgttgaacaacttgtataggaaaattg |
621717 |
T |
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