View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_22 (Length: 373)
Name: NF7689_low_22
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 1425550 - 1425906
Alignment:
| Q |
1 |
atgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgata |
100 |
Q |
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| T |
1425550 |
atgaacaagccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgttgcatgata |
1425649 |
T |
|
| Q |
101 |
tctagttatgtagtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatagaag |
200 |
Q |
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| T |
1425650 |
tctagttatgtaatgtgagataatgaattcaatgaataagtcttttgtaagtatgaatatcaccaatgtgtattatcatcattatgtaacttgatggaag |
1425749 |
T |
|
| Q |
201 |
tattagaaggtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctcta |
300 |
Q |
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| T |
1425750 |
tattagaaggtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctcta |
1425849 |
T |
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| Q |
301 |
attctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatg |
357 |
Q |
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| T |
1425850 |
attctattccgtctaatcttactatacatccaacacaacgtcctcatatctactatg |
1425906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 1447637 - 1447996
Alignment:
| Q |
8 |
agccaatgcttaaggtatttgaaaactctacaagcagtactataatgaatatttgtgggtttggataagaattagccaagttgtt-------gca--tga |
98 |
Q |
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| T |
1447637 |
agccaatgcttaaggtatttgaaaactctacaagcagtactacaatgaatatttgtgggtttggataagaattagctaagttgttaactgatgaaggtga |
1447736 |
T |
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| Q |
99 |
tatctagttatgtagtgtgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgata |
196 |
Q |
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| T |
1447737 |
tatctagttatgtaatgtgagatactgaattcaatgaatgagtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatgtaacttgata |
1447836 |
T |
|
| Q |
197 |
gaagtattagaaggtttagatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |
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| T |
1447837 |
gaagtattagaaggtttagatgtaggttaagatccaagtaatcttcagtcaccaagtaaacctaagtagtattgtcccataaatttatgttca-gttagc |
1447935 |
T |
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| Q |
297 |
tctaattctatcccgtctaatcttactataaatcgaacacaacttcctcatatctactatg |
357 |
Q |
| |
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||||||| |||||| |||| |||||||| | ||| ||||||||||| ||||||||| |||| |
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| T |
1447936 |
tctaattttatcccctctagtcttactacacatccaacacaacttcttcatatctattatg |
1447996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 1470229 - 1470423
Alignment:
| Q |
116 |
tgagatgataaattcaatgaatgagtcttctgtaagtatgaatatcaccaatg--tgtattatcatcattatgtaacttgatagaagtattagaaggttt |
213 |
Q |
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|||||| || ||||||||||| | ||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||| ||||| | |
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| T |
1470229 |
tgagataatgaattcaatgaaggggtcttttgtaagtaggaatatcaccaatgggtgtattatcatcattatataacttgatggaagtattataaggtct |
1470328 |
T |
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| Q |
214 |
agatgtaggttaagatccacgtaatcttcagtcaccaagtaaacccaagtattattgtcccataaatttatgttcatgttagctctaattctatc |
308 |
Q |
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||| |||||| ||||||| |||||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
1470329 |
tgatttaggtttagatccaagtaatcttcagtcatcaagtaaacctaagtagtattgccccataaatttatgttcatgttaggtctaattctatc |
1470423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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