View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7689_low_24 (Length: 364)
Name: NF7689_low_24
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 22906312 - 22905966
Alignment:
| Q |
16 |
tggtgtttaggcttgatttgttaatggcttggaagtctgtatcggcaccagtccgccagctgagttcatttaactcaatcgggatgaccacaagcagagg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |
|
|
| T |
22906312 |
tggtgtttaggcttgatttgttaatggcttggaagtctgtatcagcaccagtccgccagctgagttcatttaattcaatggggatgaccacaagcaaagg |
22906213 |
T |
|
| Q |
116 |
aaaatcagttctcagcaatagaggcaacta----------------tgctttatgggagttttctgtaattttgtttattcattctatagtaatggtagt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22906212 |
aaaatcagttctcagcaatagaggcaactaaagcataaatttattttgctttttggtagttttctgtaattttgtttattcattctattgtaatggtagt |
22906113 |
T |
|
| Q |
200 |
gtagaaagaattgtaaaatatttgnnnnnnnnnnnntggtagaggtattaaaatcatcatattgcatttttgttttgtgatggctaagttttaaatgtgt |
299 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22906112 |
gtagaaagaattgtaaaatatttgaaaaacaaaaaatggtagaggtattaaaatcatcatattgcatttttgttttgtgatggctaagttttaaatgtgt |
22906013 |
T |
|
| Q |
300 |
acagtcgaagctgcatgggatgtgagaagtaaaatccaaaagtctat |
346 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22906012 |
acagtcgaagctgcatgggatgcgagaagtaaaatccaaaagtctat |
22905966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 278
Target Start/End: Complemental strand, 22910532 - 22910345
Alignment:
| Q |
103 |
ccacaagcagaggaaaatcagttctcagcaatagaggcaacta----------------tgctttatgggagttttctgtaattttgtttattcattcta |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
22910532 |
ccacaagcagaggaaaatcagttctcagcaatagaggcaactaaagcatagattaattttactttttgggagttttctgtaattttgttt----attcta |
22910437 |
T |
|
| Q |
187 |
tagtaatggtagtgtagaaagaattgtaaaatatttgnnnnnnnnnnnntggtagaggtattaaaatcatcatattgcatttttgttttgtg |
278 |
Q |
| |
|
| ||||| |||||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||||||||||| ||||||| |
|
|
| T |
22910436 |
ttgtaatagtagtgtagaaagaattggaaaagatttgaaaaagaaaaaatggtagaggtatcaaaatcatcttattgcatttttcttttgtg |
22910345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 24784870 - 24784810
Alignment:
| Q |
44 |
ttggaagtctgtatcggcaccagtccgccagctgagttcatttaactcaatcgggatgacc |
104 |
Q |
| |
|
|||||||| ||| |||| |||||||| ||||||||||| ||||||||||| | ||||||| |
|
|
| T |
24784870 |
ttggaagtttgtgtcggaaccagtcctccagctgagtttgtttaactcaatggcgatgacc |
24784810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 20938586 - 20938646
Alignment:
| Q |
40 |
tggcttggaagtctgtatcggcaccagtccgccagctgagttcatttaactcaatcgggat |
100 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||||| ||||||| |||| |||||| ||||| |
|
|
| T |
20938586 |
tggcttggaagtttgtgtcggcgccagtccgccaactgagtttgtttagctcaatggggat |
20938646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University