View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_25 (Length: 352)
Name: NF7689_low_25
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 28 - 334
Target Start/End: Original strand, 14744060 - 14744376
Alignment:
| Q |
28 |
cagagagttattgtatagttgataattaacatatccnnnnnnnatccatccaatccaatagaagtccttatattccttaatatgttgaggtctttaacaa |
127 |
Q |
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| T |
14744060 |
cagagagttattgtatagttgataattaacatatcctttttttatccatccaattcaatagaagtccttatatttcttaatatgttgaggtctttaacaa |
14744159 |
T |
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| Q |
128 |
ttagacatggatctttccaaattaaaggaaaaaacaaatttccaaattacaa----------agagaatcgattctcaatttatattnnnnnnntttgaa |
217 |
Q |
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| T |
14744160 |
ttagacatggatctttccaaattaaaggaaaaaacaaatttccaaattacaaataaagaaagagagaatcgattctcaatttatattaaaaaaattagaa |
14744259 |
T |
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| Q |
218 |
attgatacattggttaggatggatactgaaacatattggtaaaccagatagatcaagaatggttagttaccttttgggtatttgaataatccgaactaga |
317 |
Q |
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| T |
14744260 |
attgatacataggttaggagggataccgaaagatattggtaaaccagatagaccaagaatggttacttacttttcgcgtatttgaataatctaaactaga |
14744359 |
T |
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| Q |
318 |
gatcatggagaagcact |
334 |
Q |
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| T |
14744360 |
gatcatggagaagcact |
14744376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 7384738 - 7384771
Alignment:
| Q |
147 |
aattaaaggaaaaaacaaatttccaaattacaaa |
180 |
Q |
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| T |
7384738 |
aattaaaggaaaaaacaaatttccgaattacaaa |
7384771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 21088865 - 21088826
Alignment:
| Q |
141 |
tttccaaattaaaggaaaaaacaaatttccaaattacaaa |
180 |
Q |
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| T |
21088865 |
tttccaaattaaaggaaaaaacaaatttccgaattacaaa |
21088826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 54794976 - 54795015
Alignment:
| Q |
141 |
tttccaaattaaaggaaaaaacaaatttccaaattacaaa |
180 |
Q |
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| T |
54794976 |
tttccaaattaaaggaaaaaacaaatttccgaattacaaa |
54795015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 18058980 - 18058941
Alignment:
| Q |
141 |
tttccaaattaaaggaaaaaacaaatttccaaattacaaa |
180 |
Q |
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| T |
18058980 |
tttccaaattaaaggaaaaaacaaatttctgaattacaaa |
18058941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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