View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7689_low_28 (Length: 332)

Name: NF7689_low_28
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7689_low_28
NF7689_low_28
[»] chr3 (2 HSPs)
chr3 (12-321)||(19607165-19607474)
chr3 (153-287)||(4576624-4576755)
[»] chr1 (1 HSPs)
chr1 (29-321)||(32604599-32604888)
[»] chr2 (3 HSPs)
chr2 (29-321)||(21022890-21023179)
chr2 (153-287)||(7230748-7230879)
chr2 (153-287)||(7230422-7230553)
[»] chr8 (3 HSPs)
chr8 (29-321)||(24956496-24956785)
chr8 (29-321)||(18176326-18176615)
chr8 (153-250)||(29564540-29564634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (153-279)||(175922-176045)
[»] chr4 (2 HSPs)
chr4 (153-279)||(14641247-14641370)
chr4 (153-287)||(26110691-26110822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (153-250)||(131180-131274)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 321
Target Start/End: Complemental strand, 19607474 - 19607165
Alignment:
Q  12 atggacatcaactttaagtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607474 atggacatcaactttaagtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgat 19607375  T
Q  112 attggtgaccaatttatccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  19607374 attggtgaccaatttatccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaattgagagaaagtgacaaagggaaaggcaa 19607275  T
Q  212 aggttgggacgacaacaactatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctc 311  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19607274 aggttgggacgacaacaactatgagaaacacatttgagcggttaactgaagcatctgaaggtcataatgaagttgaaaaggctcaaattgcggtcacctc 19607175  T
Q  312 tgatgtccat 321  Q
    | ||||||||    
T  19607174 taatgtccat 19607165  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 287
Target Start/End: Complemental strand, 4576755 - 4576624
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 252  Q
    |||| ||||||| ||||||||||||||    || | |||||| |||||||| ||  |||||| |||||| |||||||||||||||| |||||||||||      
T  4576755 aaagaaaagaaatgtttcaccagatatg---ggtgtgaaagttacaaagggtaagacaaaggctgggactacaacaactatgagaatcacatttgagcga 4576659  T
Q  253 ttaactgaagcatctgaaggtcataatgaagttga 287  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  4576658 ttagttcaagcagcagaaggtcataatgaaattga 4576624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 32604599 - 32604888
Alignment:
Q  29 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 128  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  32604599 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 32604698  T
Q  129 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 228  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  32604699 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 32604795  T
Q  229 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 321  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  32604796 actatgagaaaaacatttgagcggttagttaaagcagatgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 32604888  T

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Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 21023179 - 21022890
Alignment:
Q  29 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 128  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||     
T  21023179 gtgtgccattagaatctaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttaatattggtgaccactttag 21023080  T
Q  129 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 228  Q
    |||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  21023079 ccctatggaatatactcaacccaaaaagaaaagaaaggtttcaccaaatat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 21022983  T
Q  229 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 321  Q
    ||||||||||| |||||||||| ||||  | |||||  |||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  21022982 actatgagaaaaacatttgagcggttagtttaagcagttgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 21022890  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 7230748 - 7230879
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 252  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230748 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230844  T
Q  253 ttaactgaagcatctgaaggtcataatgaagttga 287  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230845 ttagttcaagcatcagaatgtcataatgaaattga 7230879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 7230422 - 7230553
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 252  Q
    |||| ||| ||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  7230422 aaagaaaaaaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 7230518  T
Q  253 ttaactgaagcatctgaaggtcataatgaagttga 287  Q
    |||  | ||||||| ||| ||||||||||| ||||    
T  7230519 ttagttcaagcatcagaatgtcataatgaaattga 7230553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 29 - 321
Target Start/End: Original strand, 24956496 - 24956785
Alignment:
Q  29 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 128  Q
    |||| |||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||     
T  24956496 gtgtaccatttgaatctagtgacaaaaatactactacagatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccactttag 24956595  T
Q  129 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 228  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||||| ||||   ||||| |||||||||||||||||| ||||||||||||||  |||||    
T  24956596 ccctgtggaaaatactcaacccaaaaagaaaagaaaggtttcaccatatat---tggagtgaaagtgacaaagggaaaggcaaaggttgggacttcaaca 24956692  T
Q  229 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 321  Q
    | ||||||||| |||||||||| ||||  ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  24956693 attatgagaaaaacatttgagcggttagttgaagcagctgaaggtcataatgaagttgaaaaggctcaaattgcggccacctctcatgtccat 24956785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 321
Target Start/End: Complemental strand, 18176615 - 18176326
Alignment:
Q  29 gtgtgccatttgaatttaatggcaaaaatactactacaaatgtgccacaagaaataattgactctgatgatagtgaatttgatattggtgaccaatttat 128  Q
    ||||||||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||     
T  18176615 gtgtgccatttgattgtagtggcaaaaatactactacagatgtgccacaagaaataattgactccgatgatagtgaatttgatattggtgaccactttag 18176516  T
Q  129 ccctctggaaaatactaaacccaaaaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaaca 228  Q
    |||| ||||||||||| ||||||||||| ||||||| |||||||||| |||   |||||||||||||||||||||||| |||||||||||||| ||||||    
T  18176515 ccctatggaaaatactcaacccaaaaagaaaagaaaagtttcaccagctat---tggagagaaagtgacaaagggaaaggcaaaggttgggacaacaaca 18176419  T
Q  229 actatgagaaacacatttgagcagttaactgaagcatctgaaggtcataatgaagttgaaaatgctcaaattgcggtcacctctgatgtccat 321  Q
    ||||||||||  |||||||||| ||||  ||||||| | ||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||    
T  18176418 actatgagaagaacatttgagcggttagttgaagcagccgaaggtcataatgaagttgaaaaggctcaaattgcagccacctctcatgtccat 18176326  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 29564540 - 29564634
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 250  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||    
T  29564540 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaacaaggttgggactgcaacaacaatgagaaacacatttgagc 29564634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 279
Target Start/End: Complemental strand, 176045 - 175922
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 252  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  176045 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 175949  T
Q  253 ttaactgaagcatctgaaggtcataat 279  Q
    |||  | ||||| | ||||||||||||    
T  175948 ttagttcaagcagcagaaggtcataat 175922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 279
Target Start/End: Original strand, 14641247 - 14641370
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 252  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||  | |||||||||||  |||||||||||||||||||||||||||      
T  14641247 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagaccaaggttgggactgcaacaactatgagaaacacatttgagcga 14641343  T
Q  253 ttaactgaagcatctgaaggtcataat 279  Q
    |||  | ||||| | ||||||||||||    
T  14641344 ttagttcaagcagcagaaggtcataat 14641370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 287
Target Start/End: Original strand, 26110691 - 26110822
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagcag 252  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||||| ||    |||||||||||  ||||||| |||||||||||||||||||      
T  26110691 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagggtaagatcaaggttgggactgcaacaacgatgagaaacacatttgagcga 26110787  T
Q  253 ttaactgaagcatctgaaggtcataatgaagttga 287  Q
    |||  | ||||| | ||||||||||||||| ||||    
T  26110788 ttagttcaagcagcagaaggtcataatgaaattga 26110822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 153 - 250
Target Start/End: Original strand, 131180 - 131274
Alignment:
Q  153 aaagtaaagaaaggtttcaccagatattaatggagagaaagtgacaaagggaaatgcaaaggttgggacgacaacaactatgagaaacacatttgagc 250  Q
    |||| ||||||||||||||||||||||    || |||||||| |||||| | ||  | |||||||||||  |||||||||||||||||||||||||||    
T  131180 aaagaaaagaaaggtttcaccagatatg---ggtgagaaagttacaaagtgtaagaccaaggttgggactgcaacaactatgagaaacacatttgagc 131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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