View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_29 (Length: 328)
Name: NF7689_low_29
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 310
Target Start/End: Original strand, 45930858 - 45931165
Alignment:
| Q |
3 |
cttttgttctagatttcgtttgttaacacgtcctttcctcgggagaaatccctgtatacattccaagtgtgtatttgatcttattgtcgtaagtaactaa |
102 |
Q |
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| T |
45930858 |
cttttgttctagatttcgtttgttaacacgtcctttcctcgggagaaatccttgtatacattccaagtgtgtatttgatcttattgtcgtaagtaactaa |
45930957 |
T |
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| Q |
103 |
ataaatgttcatgttgttttgaaggtgcaagggaaagatagaaactatattaaatttgtagcggagaaactgggtttggatggttcctatgtccctcgca |
202 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45930958 |
atacatgttcatgttgttttgaaggtgcaagggaaagatagaaactatattaaatttgtagcggagaaactgggtttggatggttcctatgtccctcgca |
45931057 |
T |
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| Q |
203 |
cttacattgaacaaattcagctagaaaagcttgtaaatgatgtgatggtatgaatacttacccattgcttgcgctttgcatatttgtacaccaatttact |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45931058 |
cttacattgaacaaattcagctagaaaagcttgtaaatgatgtgatggtatgaatacttacccattgcttgcgctttgcatatttgtacaccaatttact |
45931157 |
T |
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| Q |
303 |
gatctagt |
310 |
Q |
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|||||||| |
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| T |
45931158 |
gatctagt |
45931165 |
T |
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