View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7689_low_36 (Length: 260)

Name: NF7689_low_36
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7689_low_36
NF7689_low_36
[»] chr1 (4 HSPs)
chr1 (80-186)||(51805940-51806046)
chr1 (193-241)||(51806155-51806203)
chr1 (16-77)||(19797962-19798022)
chr1 (43-77)||(5100131-5100165)
[»] chr3 (4 HSPs)
chr3 (16-76)||(55432292-55432351)
chr3 (43-77)||(20175496-20175530)
chr3 (43-76)||(3426176-3426209)
chr3 (43-76)||(46965118-46965151)
[»] chr7 (2 HSPs)
chr7 (43-77)||(12802388-12802422)
chr7 (13-41)||(3881035-3881063)
[»] chr4 (2 HSPs)
chr4 (43-77)||(12822866-12822900)
chr4 (43-77)||(13060573-13060607)
[»] chr8 (3 HSPs)
chr8 (43-76)||(1808556-1808589)
chr8 (43-76)||(44924878-44924911)
chr8 (43-76)||(1909904-1909937)
[»] chr5 (2 HSPs)
chr5 (43-75)||(10759320-10759352)
chr5 (43-76)||(40150301-40150334)
[»] chr6 (2 HSPs)
chr6 (43-76)||(11533659-11533692)
chr6 (43-76)||(11559169-11559202)
[»] chr2 (2 HSPs)
chr2 (43-76)||(12361351-12361384)
chr2 (43-76)||(25477246-25477279)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 51805940 - 51806046
Alignment:
Q  80 tgaatgaggatgtcaaatttttgaaagttcaaggcagtaaaaaatgttactgagatttttcaatccaggtatatagttgaacaaaatcaaaagtggtagt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805940 tgaatgaggatgtcaaatttttgaaagttcaaggcagtaaaaaatgttgctgagatttttcaatccaggtatatagttgaacaaaatcaaaagtggtagt 51806039  T
Q  180 taatggt 186  Q
    |||||||    
T  51806040 taatggt 51806046  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 51806155 - 51806203
Alignment:
Q  193 taatttggaataataactgactctgtttcgttcatttgaaagaaattga 241  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51806155 taatttggaataataactgactctgtctcgttcatttgaaagaaattga 51806203  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 19798022 - 19797962
Alignment:
Q  16 attagatcaaagtataattacttggtgatttattttccaacatcacactaatgttccaacaa 77  Q
    ||||||||||| ||||||||||||||  || |||||||||||||||||||||||||||||||    
T  19798022 attagatcaaa-tataattacttggtatttaattttccaacatcacactaatgttccaacaa 19797962  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 5100165 - 5100131
Alignment:
Q  43 atttattttccaacatcacactaatgttccaacaa 77  Q
    |||||||||||||||||||||||||||| ||||||    
T  5100165 atttattttccaacatcacactaatgttacaacaa 5100131  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 55432292 - 55432351
Alignment:
Q  16 attagatcaaagtataattacttggtgatttattttccaacatcacactaatgttccaaca 76  Q
    ||||||||||| ||||||||||||||| || || |||||||||||||| ||||||||||||    
T  55432292 attagatcaaa-tataattacttggtgtttaatcttccaacatcacaccaatgttccaaca 55432351  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 20175496 - 20175530
Alignment:
Q  43 atttattttccaacatcacactaatgttccaacaa 77  Q
    |||||||||||||||||||||||||||||||||||    
T  20175496 atttattttccaacatcacactaatgttccaacaa 20175530  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 3426176 - 3426209
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||||||||||||||||||||||||||||||    
T  3426176 atttattttccaacatcacactaatgttccaaca 3426209  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 46965118 - 46965151
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    |||||||||||||||| |||||||||||||||||    
T  46965118 atttattttccaacattacactaatgttccaaca 46965151  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 12802388 - 12802422
Alignment:
Q  43 atttattttccaacatcacactaatgttccaacaa 77  Q
    |||||||||||||||||||||||||||||||||||    
T  12802388 atttattttccaacatcacactaatgttccaacaa 12802422  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 3881035 - 3881063
Alignment:
Q  13 aatattagatcaaagtataattacttggt 41  Q
    |||||||||||||||||||||||||||||    
T  3881035 aatattagatcaaagtataattacttggt 3881063  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 12822900 - 12822866
Alignment:
Q  43 atttattttccaacatcacactaatgttccaacaa 77  Q
    |||||||||||||||||||||||||||||||||||    
T  12822900 atttattttccaacatcacactaatgttccaacaa 12822866  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 13060573 - 13060607
Alignment:
Q  43 atttattttccaacatcacactaatgttccaacaa 77  Q
    ||||||||| |||||||||||||||||||||||||    
T  13060573 atttatttttcaacatcacactaatgttccaacaa 13060607  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 1808556 - 1808589
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||||||||||||||||||||||||||||||    
T  1808556 atttattttccaacatcacactaatgttccaaca 1808589  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 44924911 - 44924878
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||||||||||||||||||||||||||||||    
T  44924911 atttattttccaacatcacactaatgttccaaca 44924878  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 1909937 - 1909904
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    |||||||||||||||||| |||||||||||||||    
T  1909937 atttattttccaacatcatactaatgttccaaca 1909904  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 10759352 - 10759320
Alignment:
Q  43 atttattttccaacatcacactaatgttccaac 75  Q
    |||||||||||||||||||||||||||||||||    
T  10759352 atttattttccaacatcacactaatgttccaac 10759320  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 40150301 - 40150334
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||||| ||||||||||||||||||||||||    
T  40150301 atttatttttcaacatcacactaatgttccaaca 40150334  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 11533692 - 11533659
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||| ||||||||||||||||||||||||||    
T  11533692 atttattctccaacatcacactaatgttccaaca 11533659  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 11559202 - 11559169
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||| ||||||||||||||||||||||||||    
T  11559202 atttattctccaacatcacactaatgttccaaca 11559169  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 12361351 - 12361384
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||||||||||| ||||||||||||||||||    
T  12361351 atttattttccaacaccacactaatgttccaaca 12361384  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 25477279 - 25477246
Alignment:
Q  43 atttattttccaacatcacactaatgttccaaca 76  Q
    ||||||||| ||||||||||||||||||||||||    
T  25477279 atttatttttcaacatcacactaatgttccaaca 25477246  T

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