View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_40 (Length: 240)
Name: NF7689_low_40
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39069416 - 39069194
Alignment:
| Q |
1 |
taacaatgagctcccactttatccttccaaaagnnnnnnnncgagctcccactttcctttttctttttaaatgtatagattaattgcaacttgcatttaa |
100 |
Q |
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| T |
39069416 |
taacaatgagctcccactttatccttccaaaagaaaaaaa-cgagctcccactttcctttttctttttaaatgtatagattaattgcaacttgcacttaa |
39069318 |
T |
|
| Q |
101 |
ataattaaacgattttgttaacattagctagctataagatgtt-aaataaaaaattgtccatgagtcctatctcagttaataaaatatcaaaatcgttag |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39069317 |
ataattaaacgattttgttaacattagctagctataagatgttaaaataaaaaattgtccatgagtcctatctcaattaataaaatatcaaaatcgttag |
39069218 |
T |
|
| Q |
200 |
gatgga-atcgtgactgggattca |
222 |
Q |
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|||||| |||||||||||||||| |
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| T |
39069217 |
gatggacgtcgtgactgggattca |
39069194 |
T |
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