View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_41 (Length: 233)
Name: NF7689_low_41
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_41 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 26166631 - 26166819
Alignment:
| Q |
17 |
aaatagaacattagcttgcttagaaattaagacagaatattcccagaaatacaagaggcaagcaaaacaagaagcatccatcagaaaagaatagaagaaa |
116 |
Q |
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| T |
26166631 |
aaatagaacattagcttgcttagaaattaagacagaatattcccagaaatacaa----------------gaagcatccatcagaatagaatagaagaaa |
26166714 |
T |
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| Q |
117 |
cataaattagggttttggagaaaccttaaaaggaggttgccgcgacaaagagaggatggagaatcaaggagcaagaccatcgtggttatgttaatcattc |
216 |
Q |
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| T |
26166715 |
cataaattagggttttggagaaaccttaaaaggaggttgccgcgacaaagagaggatggagaatcaaggagcaagaccatcgtggttatgttaatcattc |
26166814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 16649044 - 16648908
Alignment:
| Q |
17 |
aaatagaacattagcttgcttagaaattaagacagaatattcccagaaatacaagaggcaagcaaaacaagaa-gcatccatcagaaaagaatagaagaa |
115 |
Q |
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| T |
16649044 |
aaatagaatattagattgctttaaaattaagtcaagacatgcctataaatacaagaggcaagcaacacaagaatgcatcaattagaagagaatagaagaa |
16648945 |
T |
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| Q |
116 |
acataaattagggttttggagaaaccttaaaaggagg |
152 |
Q |
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| T |
16648944 |
acaaaaattagggttttggagaaacctcaagaggagg |
16648908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 1594681 - 1594820
Alignment:
| Q |
36 |
ttagaaattaagacagaatattcccagaaatacaagaggcaagcaaaacaag-aagcatccatcagaaaagaatagaagaaa--cataaattagggtttt |
132 |
Q |
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|||||||||||| ||||||| || | |||||||||||||||| || ||||| || ||| |||||||||||||| |||||| || |||| |||||||| |
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| T |
1594681 |
ttagaaattaaggaagaatatacctataaatacaagaggcaagaaacacaagaaataatcgatcagaaaagaataaaagaaactcacaaatcagggtttt |
1594780 |
T |
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| Q |
133 |
ggagaaaccttaaaaggaggttgccgcgacaaagagagga |
172 |
Q |
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| T |
1594781 |
ggagaagtcttaagacgaggcaaccacgacaaagagagga |
1594820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 14638 - 14572
Alignment:
| Q |
104 |
agaatagaagaaacataaattagggttttggagaaaccttaaaaggaggttgccgcgacaaagagag |
170 |
Q |
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| T |
14638 |
agaatagaagaaacacaaattagggttttacagaaacctcaaaaggaggtagccttgacaaggagag |
14572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 16370463 - 16370559
Alignment:
| Q |
24 |
acattagcttgcttagaaattaagacagaatatt---cccagaaatacaagaggcaagcaaaacaagaag-catccatcagaaaagaatagaagaaa |
116 |
Q |
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||||||| |||||||||||||||| || || ||| || | ||||||||||||||| ||| |||||||| ||| |||||||| ||||||||||||| |
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| T |
16370463 |
acattaggttgcttagaaattaagtcaaaacattatgcctataaatacaagaggcaaacaacacaagaagacattcatcagaagagaatagaagaaa |
16370559 |
T |
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