View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_44 (Length: 222)
Name: NF7689_low_44
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 32203775 - 32203589
Alignment:
| Q |
17 |
cagagatgtacttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgagtttaacaccattgt |
116 |
Q |
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| T |
32203775 |
cagagatgttcttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgagtttaacaccattgt |
32203676 |
T |
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| Q |
117 |
acttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttattaacatttacatgaatac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32203675 |
acttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttatttacatttacatgaatac |
32203589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 35566218 - 35566404
Alignment:
| Q |
17 |
cagagatgtacttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgagtttaacaccattgt |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35566218 |
cagagatgttcttagcacaagattccattcctatcttatgaatgaggtcagggattatttccatcatcttcatcatcacggacgagtttaacaccattgt |
35566317 |
T |
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| Q |
117 |
acttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttattaacatttacatgaatac |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35566318 |
acttaagagcatttaccacagccaaaatcttggtttggctcttaaatcctttcttttctatttccttatttacatttacatgaatac |
35566404 |
T |
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