View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_5 (Length: 518)
Name: NF7689_low_5
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_5 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 350 - 518
Target Start/End: Complemental strand, 44034873 - 44034705
Alignment:
| Q |
350 |
tgatgtctatgtttttaaaaagtgcaggttgtaaattcttcgtatgagacgatgaatttgatggacatccttcatatgtctgtctcataacatttgaacc |
449 |
Q |
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| T |
44034873 |
tgatgtctatgtttttaaaaagtgcaggttgtaaattcttcgtatgagacgatgaacttgatggacatccttcatatgtctctctcataacatttgaacc |
44034774 |
T |
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| Q |
450 |
ataaattatttaagggcgtcgggttgtgcattgtcatctactgacatgaattagtcttgtgattgcaac |
518 |
Q |
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| T |
44034773 |
ataaattatttaagggcgtcgggttgtgcattgtcatctactgacatgaattagtcttgtgattgcaac |
44034705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 141 - 284
Target Start/End: Complemental strand, 44035082 - 44034939
Alignment:
| Q |
141 |
ttttcatttccaagtatcgaagaacacaatcgtgtaaccaaggaaggtgaagagacaaaggaagaacaaaagagtgaacttgggtgagtctaaaaacatt |
240 |
Q |
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| T |
44035082 |
ttttcatttccaagtaccgaagaacacaatcgtgtaaccaaggaaggtgaagagacaaaggaagaacaaaagagtgaacttgggtgagtctaaaaacatt |
44034983 |
T |
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| Q |
241 |
tctaactcagattcaactacaaacaacgttaataatatggtaat |
284 |
Q |
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| T |
44034982 |
tctaactcagattcaactacaaacaacgttaataatatggtaat |
44034939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 44035501 - 44035428
Alignment:
| Q |
1 |
ttgtcccattataattacccttcaacaaacaactattgtccctaacatttaaaacatcaaggttagtattatata |
75 |
Q |
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| T |
44035501 |
ttgtcccattataattacccttcaacaaacaactattgtctc-aacatttaaaacatcaaggttagtattatata |
44035428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 107
Target Start/End: Complemental strand, 44035142 - 44035112
Alignment:
| Q |
77 |
taaaaaagttgcatcggtattgttgtagtga |
107 |
Q |
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| T |
44035142 |
taaaaaagttgcatcggtattgttgtagtga |
44035112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 37196555 - 37196523
Alignment:
| Q |
235 |
aacatttctaactcagattcaactacaaacaac |
267 |
Q |
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| T |
37196555 |
aacatttctaactcagattcaaccacaaacaac |
37196523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 37196622 - 37196570
Alignment:
| Q |
159 |
gaagaacacaatcgtgtaaccaaggaaggtgaagagacaaaggaagaacaaaa |
211 |
Q |
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| T |
37196622 |
gaagaatacaatcatgcaaccaaggaggataaagagacaaaggaagaacaaaa |
37196570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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