View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7689_low_8 (Length: 492)
Name: NF7689_low_8
Description: NF7689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7689_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Original strand, 4803870 - 4804260
Alignment:
| Q |
19 |
tctacctccaatgagaactcagtctggattgaaatatacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtcaaggtacttg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
4803870 |
tctacctccaatgagaactcagtctggattgaaatatacaaacacaatgtcagcttcatagacatgtttttcaacatcagtgttgaagacaaggtacttg |
4803969 |
T |
|
| Q |
119 |
catcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgctattcaaggctgcaatgcacgatttcgagatatatatcaagg |
218 |
Q |
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| T |
4803970 |
catcgacattgctttactacatcatcaatacctggctcatagataggaagttgattgctattcaaggctgcaatgcacgatttcgagatatatatcaagg |
4804069 |
T |
|
| Q |
219 |
ctgcattgctctatcaacgacagctgcttgaatggatggacatctaaatacaatgactgttattgttggactcccatacatatctagcatcaatgcagaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||| | |
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| T |
4804070 |
ctgcattgctctatcaacgacagctgcttgaatggatggacatctaaatacaatgactgttattattggactcccttacatatctagtatcaatgcagca |
4804169 |
T |
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| Q |
319 |
aatcttcaccattctttctttccaaagctatccacactggtgttcaaatgtattagtgaatacaattatggagcaaaagctaatttcgtcg |
409 |
Q |
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| T |
4804170 |
aatcttcaccattctttctttcctaacctatccacactggtgttcaaatgtattagtgaatacaattatggagcaaaagctaatttggtcg |
4804260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 10779297 - 10779451
Alignment:
| Q |
54 |
atacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtcaaggtacttgcatcgacattgctttactacatcatcaatacctgg |
153 |
Q |
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| T |
10779297 |
atacaaacacaattttagcttcatagacatgtttttcaacatcagtgctgaagaaaaggt-cttgctgcgacattactttactacataatcaagattttg |
10779395 |
T |
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| Q |
154 |
ctcatagataggaagttgattgctattcaaggctgcaatgcacgatttcgagatat |
209 |
Q |
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| T |
10779396 |
ctcatagataggaagttgattgttgttccacactgcaatgcgcgatttcgagatat |
10779451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 173
Target Start/End: Complemental strand, 4798068 - 4797949
Alignment:
| Q |
54 |
atacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtcaaggtacttgcatcgacattgctttactacatcatcaatacctgg |
153 |
Q |
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|||||||||| |||||||||||| ||||||||||| ||||||| || ||||| ||||| ||||| ||| ||||||||||||||||||||| |||||| |
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| T |
4798068 |
atacaaacactgtgtcagcttcatggacatgttttttaacatcagtgctgaagaaaaggttcttgccgcgatattgctttactacatcatcaagacctgg |
4797969 |
T |
|
| Q |
154 |
ctcatagataggaagttgat |
173 |
Q |
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|||||||| | |||||||| |
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| T |
4797968 |
ttcatagatggcaagttgat |
4797949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 4819502 - 4819657
Alignment:
| Q |
54 |
atacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtcaaggtacttgcatcgacattgctttactacatcatcaatacctgg |
153 |
Q |
| |
|
||||| |||| || ||| |||| ||||||||||||||||| | |||| ||||| || | ||||| ||||||||||||||||||||||||| ||| | |
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| T |
4819502 |
atacagacactatttcaacttcgtagacatgtttttcaacttgaatgctgaagaaaaagctcttgccgcgacattgctttactacatcatcaagaccgga |
4819601 |
T |
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| Q |
154 |
ctcatagataggaagttgattgctattcaaggctgcaatgcacgatttcgagatat |
209 |
Q |
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|||||||||||||| ||||||| | | | | ||||||| | |||||||||||||| |
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| T |
4819602 |
ctcatagataggaacttgattgttgtgccacactgcaatacgcgatttcgagatat |
4819657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 299 - 404
Target Start/End: Complemental strand, 4797849 - 4797744
Alignment:
| Q |
299 |
tatctagcatcaatgcagaaaatcttcaccattctttctttccaaagctatccacactggtgttcaaatgtattagtgaatacaattatggagcaaaagc |
398 |
Q |
| |
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|||| |||| |||||||| |||||||||| ||| || |||||| || ||||||||| |||||||||||||||| | | |||||||||||| ||||||| |
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| T |
4797849 |
tatccagcaccaatgcagcaaatcttcacaatttttcctttcctaacctatccacagtggtgttcaaatgtatcaataaatacaattatgctgcaaaagt |
4797750 |
T |
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| Q |
399 |
taattt |
404 |
Q |
| |
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|||||| |
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| T |
4797749 |
taattt |
4797744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 4804259 - 4804311
Alignment:
| Q |
428 |
cgttttaatagcaatcacaatgaagtttttgtcatgttttgatccttaatatt |
480 |
Q |
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| T |
4804259 |
cgttttaatagcaatcacgatgaagtttttgtcacgttttgatcgttaatatt |
4804311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 4835666 - 4835756
Alignment:
| Q |
54 |
atacaaacacaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtcaaggtacttgcatcgacattgctttactacatcatca |
145 |
Q |
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| T |
4835666 |
atacaaacactatgtcagctgtata-acatgttttttgacatcaatgctgaagaaaaggttctttctgcgacattgctttactacatcatca |
4835756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 384
Target Start/End: Original strand, 10775829 - 10775889
Alignment:
| Q |
324 |
tcaccattctttctttccaaagctatccacactggtgttcaaatgtattagtgaatacaat |
384 |
Q |
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| T |
10775829 |
tcaccatttttcctttcctaacctatccatagtggtgttcaaatgtattagtaaatacaat |
10775889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 4824480 - 4824531
Alignment:
| Q |
122 |
cgacattgctttactacatcatcaatacctggctcatagataggaagttgat |
173 |
Q |
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| T |
4824480 |
cgacattgctttactaaaccatcaaaacctggctgatagataggaatttgat |
4824531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 162
Target Start/End: Original strand, 18937592 - 18937691
Alignment:
| Q |
62 |
acaatgtcagcttcatagacatgtttttcaacatcaatgttgaagtcaaggtacttgcatcgacattgctttactacatcatcaatacctggctcataga |
161 |
Q |
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| T |
18937592 |
acaatgtcaacttcgtagaaatgcttttcaacatcaatgctaaagaaaaggtttttgccgtgacattactttactacatcat-aagacttggctcataga |
18937690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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