View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7690_high_11 (Length: 233)
Name: NF7690_high_11
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7690_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7331113 - 7331346
Alignment:
| Q |
1 |
aacaaataaaagagtaaaaagtcattttggtcacta-atgtgtgaagtggtatcactatagtccctaaatgtatcgaaatgacaaatacatccttgagtt |
99 |
Q |
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| T |
7331113 |
aacaaataaaagagtaaaaagtcattttggtcactagatgtgtgaagtggtgtcactatagtccctaaatgtatcgaaatgacaaatacatccttgagtt |
7331212 |
T |
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| Q |
100 |
tatattttgttagtaatttgatggatcaatctgactaattaaattaacatttaaggactaactaactaatgtaaaacacatttgaggattaaattaacta |
199 |
Q |
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| T |
7331213 |
tatattttgttagtaatttgatggatcaatctgactaattaaattaacatttaaggactaactaactaatgtaaaacacatttgaggattaaattaacta |
7331312 |
T |
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| Q |
200 |
actatagacgtaatcaagagtatgtttgtaattt |
233 |
Q |
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| T |
7331313 |
actatagacgtaatcaagaatatgtttgtaattt |
7331346 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 38350976 - 38350920
Alignment:
| Q |
68 |
atgtatcgaaatgacaaatacatccttgagtttatattttgttagtaatttgatgga |
124 |
Q |
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| T |
38350976 |
atgtatcgaaattacaaataaatcattgagtgtatattctgttaataatttgatgga |
38350920 |
T |
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