View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7690_high_14 (Length: 229)
Name: NF7690_high_14
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7690_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 30065203 - 30065390
Alignment:
| Q |
19 |
attataatatctttaaaa-tatctacatggcgagatacaattgaatgtatgtgtaaaaaatagtttattcttacaatgaatacaaattaaattcaacaag |
117 |
Q |
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|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30065203 |
attataatatttttaaaaatatctacatggtgagatacaattgaatgtatgtgtaaaaaatagtttatagttacaatgaatacaaattaaattcaacaag |
30065302 |
T |
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| Q |
118 |
actgaatttttatttcaattgagaagtttctaaattctcaaagattatctaaattggacttgaatagtgagtactgcattatttgata |
205 |
Q |
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| T |
30065303 |
actgaatttttatttcaattgagaagtttctgaattcttaaagataatctaaattggacttgaatacttagtactgcattacttgata |
30065390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 30008704 - 30008892
Alignment:
| Q |
19 |
attataatatctttaaaa-tatctacatggcgagatacaattgaatgtatgtgtaaaaaatagtttattcttacaatgaatacaaattaaattcaacaag |
117 |
Q |
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|||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30008704 |
attataatatttttaaaaatatcgacatggtgagatacaattgaatgtatgtgtaaaaaatagtttatagttacaatgaatacaaattaaattcaacaag |
30008803 |
T |
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| Q |
118 |
actgaatttttatttcaattgagaagtttctaaattc-tcaaagattatctaaattggacttgaatagtgagtactgcattatttgata |
205 |
Q |
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|||||||||||||||||||||||||||||| ||||| | |||||| || ||||||||||||||||| |||||||||||||| |||||| |
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| T |
30008804 |
cctgaatttttatttcaattgagaagtttctgaattcttaaaagataatttaaattggacttgaatactgagtactgcattacttgata |
30008892 |
T |
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