View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7690_high_6 (Length: 288)

Name: NF7690_high_6
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7690_high_6
NF7690_high_6
[»] chr8 (36 HSPs)
chr8 (184-288)||(29820902-29821006)
chr8 (2-85)||(29840849-29840932)
chr8 (15-85)||(26867446-26867516)
chr8 (2-85)||(16290844-16290927)
chr8 (15-85)||(16889962-16890032)
chr8 (2-85)||(10568307-10568391)
chr8 (2-78)||(17274705-17274781)
chr8 (184-247)||(17274539-17274602)
chr8 (2-85)||(41600712-41600795)
chr8 (12-85)||(6001409-6001483)
chr8 (2-118)||(23595330-23595448)
chr8 (2-118)||(23604252-23604370)
chr8 (13-78)||(26657662-26657727)
chr8 (2-75)||(45268842-45268915)
chr8 (2-85)||(21593170-21593254)
chr8 (13-85)||(24184769-24184841)
chr8 (191-282)||(17960101-17960192)
chr8 (15-57)||(14413353-14413395)
chr8 (19-85)||(15234786-15234852)
chr8 (25-85)||(29250273-29250332)
chr8 (186-245)||(10568529-10568588)
chr8 (12-71)||(17959917-17959976)
chr8 (186-248)||(6001252-6001314)
chr8 (13-71)||(26393360-26393418)
chr8 (11-80)||(21499358-21499427)
chr8 (17-57)||(11837155-11837195)
chr8 (26-85)||(16325651-16325708)
chr8 (2-77)||(19742037-19742113)
chr8 (17-57)||(23124011-23124051)
chr8 (19-85)||(4206432-4206499)
chr8 (2-77)||(17802740-17802815)
chr8 (18-73)||(43856118-43856173)
chr8 (186-245)||(45269020-45269079)
chr8 (15-85)||(14335295-14335365)
chr8 (17-73)||(11620435-11620491)
chr8 (13-57)||(18036834-18036878)
[»] chr4 (25 HSPs)
chr4 (184-288)||(33040766-33040870)
chr4 (3-118)||(33040582-33040697)
chr4 (9-81)||(6192577-6192649)
chr4 (2-85)||(8667105-8667187)
chr4 (184-288)||(44673860-44673956)
chr4 (2-75)||(39406824-39406897)
chr4 (2-78)||(44673682-44673758)
chr4 (13-85)||(25219641-25219713)
chr4 (15-85)||(18234230-18234300)
chr4 (18-84)||(23795451-23795517)
chr4 (17-81)||(11485219-11485284)
chr4 (15-115)||(1924674-1924775)
chr4 (2-64)||(7190083-7190145)
chr4 (184-284)||(8667300-8667393)
chr4 (13-73)||(4936025-4936085)
chr4 (2-62)||(19904620-19904680)
chr4 (14-85)||(44453099-44453171)
chr4 (15-78)||(3007303-3007366)
chr4 (186-245)||(39407004-39407063)
chr4 (2-118)||(18025411-18025529)
chr4 (2-118)||(34512013-34512131)
chr4 (13-85)||(11415993-11416065)
chr4 (2-78)||(20380221-20380297)
chr4 (2-32)||(549355-549385)
chr4 (2-64)||(18117419-18117481)
[»] chr1 (49 HSPs)
chr1 (184-287)||(10423989-10424091)
chr1 (2-119)||(10423808-10423925)
chr1 (191-285)||(907851-907945)
chr1 (13-84)||(34528937-34529008)
chr1 (200-283)||(1624237-1624321)
chr1 (2-85)||(907666-907749)
chr1 (13-85)||(42264406-42264478)
chr1 (13-85)||(12629267-12629339)
chr1 (13-85)||(18332719-18332790)
chr1 (2-85)||(27035859-27035943)
chr1 (2-78)||(34517674-34517750)
chr1 (2-72)||(13309386-13309456)
chr1 (20-85)||(41574324-41574388)
chr1 (2-85)||(2583086-2583170)
chr1 (18-85)||(31893101-31893169)
chr1 (15-78)||(21813158-21813221)
chr1 (15-85)||(20471150-20471220)
chr1 (15-85)||(20560317-20560387)
chr1 (13-85)||(19100273-19100344)
chr1 (30-85)||(43021770-43021826)
chr1 (2-85)||(1624044-1624127)
chr1 (19-85)||(8681368-8681435)
chr1 (191-246)||(11779519-11779574)
chr1 (19-78)||(19088869-19088928)
chr1 (2-73)||(20808763-20808834)
chr1 (2-57)||(21464786-21464841)
chr1 (18-73)||(21487859-21487914)
chr1 (2-41)||(35877006-35877045)
chr1 (15-85)||(13534300-13534370)
chr1 (27-85)||(19068630-19068688)
chr1 (27-85)||(19116520-19116578)
chr1 (15-85)||(23487439-23487509)
chr1 (19-85)||(34507894-34507959)
chr1 (18-71)||(10433199-10433252)
chr1 (18-85)||(3833449-3833517)
chr1 (2-85)||(11779332-11779416)
chr1 (17-57)||(22522820-22522860)
chr1 (15-78)||(16280426-16280489)
chr1 (2-73)||(27177599-27177670)
chr1 (20-85)||(16816259-16816322)
chr1 (2-52)||(24961869-24961919)
chr1 (2-64)||(41343843-41343905)
chr1 (13-85)||(19054403-19054473)
chr1 (21-81)||(15913549-15913609)
chr1 (18-73)||(17122829-17122884)
chr1 (13-85)||(28015984-28016056)
chr1 (15-63)||(29302952-29303000)
chr1 (13-85)||(32943739-32943810)
chr1 (13-85)||(34879934-34880006)
[»] chr6 (45 HSPs)
chr6 (2-85)||(9351131-9351214)
chr6 (184-288)||(9351313-9351417)
chr6 (12-118)||(14982344-14982451)
chr6 (2-78)||(14372193-14372269)
chr6 (2-73)||(3056937-3057008)
chr6 (15-78)||(24127844-24127907)
chr6 (12-85)||(32569817-32569891)
chr6 (15-85)||(26522711-26522783)
chr6 (15-85)||(12435942-12436012)
chr6 (2-66)||(8462014-8462078)
chr6 (2-78)||(10192847-10192923)
chr6 (13-85)||(13565901-13565973)
chr6 (13-85)||(14641424-14641496)
chr6 (184-288)||(14373755-14373851)
chr6 (2-85)||(20898950-20899033)
chr6 (15-70)||(34338114-34338169)
chr6 (15-85)||(9696878-9696948)
chr6 (15-85)||(18306748-18306817)
chr6 (13-85)||(24353209-24353282)
chr6 (13-85)||(8212273-8212345)
chr6 (13-85)||(31633600-31633672)
chr6 (2-77)||(26592529-26592604)
chr6 (191-281)||(14982180-14982270)
chr6 (2-78)||(3546655-3546731)
chr6 (17-73)||(10138871-10138927)
chr6 (17-73)||(27962065-27962121)
chr6 (196-282)||(3056734-3056814)
chr6 (2-57)||(19324759-19324814)
chr6 (186-260)||(24353376-24353450)
chr6 (13-77)||(13574997-13575061)
chr6 (13-77)||(13577536-13577600)
chr6 (13-57)||(22705331-22705375)
chr6 (17-73)||(22955759-22955815)
chr6 (17-73)||(23832578-23832634)
chr6 (13-85)||(33325861-33325932)
chr6 (13-73)||(841322-841383)
chr6 (2-79)||(9344472-9344549)
chr6 (20-73)||(11650839-11650892)
chr6 (20-77)||(13570461-13570518)
chr6 (13-85)||(1110444-1110516)
chr6 (13-69)||(15141922-15141978)
chr6 (13-57)||(24617751-24617795)
chr6 (2-85)||(27990796-27990880)
chr6 (18-54)||(30509095-30509131)
chr6 (18-85)||(30884390-30884455)
[»] scaffold0886 (1 HSPs)
scaffold0886 (2-78)||(2777-2853)
[»] scaffold0006 (2 HSPs)
scaffold0006 (2-78)||(36679-36755)
scaffold0006 (191-248)||(36889-36946)
[»] chr3 (30 HSPs)
chr3 (192-288)||(16416414-16416510)
chr3 (192-288)||(18517387-18517483)
chr3 (2-85)||(51661668-51661751)
chr3 (13-85)||(26953969-26954041)
chr3 (2-85)||(18517666-18517749)
chr3 (13-77)||(1051335-1051399)
chr3 (1-85)||(2928580-2928664)
chr3 (2-82)||(16037948-16038028)
chr3 (12-75)||(19826429-19826492)
chr3 (2-85)||(25760008-25760091)
chr3 (2-78)||(16041497-16041573)
chr3 (13-84)||(10997416-10997487)
chr3 (2-118)||(26430212-26430328)
chr3 (184-247)||(51661510-51661573)
chr3 (215-285)||(26430054-26430124)
chr3 (2-78)||(3580434-3580510)
chr3 (2-78)||(16053448-16053524)
chr3 (2-78)||(47165893-47165969)
chr3 (17-57)||(34796870-34796910)
chr3 (15-57)||(3736497-3736539)
chr3 (2-118)||(14674185-14674303)
chr3 (2-75)||(5813566-5813639)
chr3 (191-248)||(19826604-19826660)
chr3 (17-73)||(16309687-16309743)
chr3 (17-73)||(18490681-18490737)
chr3 (18-69)||(33537305-33537356)
chr3 (2-118)||(11072433-11072551)
chr3 (2-118)||(20970215-20970333)
chr3 (20-85)||(40790654-40790718)
chr3 (184-244)||(2928760-2928820)
[»] chr2 (39 HSPs)
chr2 (12-78)||(36802282-36802348)
chr2 (13-81)||(40926479-40926547)
chr2 (2-78)||(17678296-17678372)
chr2 (2-78)||(20477420-20477496)
chr2 (15-85)||(38376884-38376955)
chr2 (2-76)||(34454887-34454961)
chr2 (2-85)||(17377513-17377596)
chr2 (19-85)||(24270841-24270907)
chr2 (15-85)||(38242155-38242225)
chr2 (2-85)||(12102796-12102880)
chr2 (191-259)||(28698015-28698083)
chr2 (15-78)||(17679734-17679797)
chr2 (19-77)||(17151291-17151349)
chr2 (19-85)||(24297329-24297395)
chr2 (15-68)||(28462125-28462178)
chr2 (13-73)||(6083735-6083795)
chr2 (2-74)||(22169973-22170045)
chr2 (17-73)||(24524098-24524154)
chr2 (17-73)||(26916628-26916684)
chr2 (2-85)||(28948858-28948942)
chr2 (2-85)||(29216590-29216674)
chr2 (2-85)||(29329889-29329973)
chr2 (14-85)||(30418965-30419037)
chr2 (18-85)||(32234449-32234517)
chr2 (193-244)||(17377743-17377794)
chr2 (15-61)||(20426349-20426395)
chr2 (15-57)||(20632480-20632522)
chr2 (15-85)||(42270375-42270445)
chr2 (13-85)||(20434200-20434275)
chr2 (13-78)||(28698188-28698253)
chr2 (2-85)||(9892142-9892226)
chr2 (17-73)||(20386640-20386696)
chr2 (17-57)||(25971019-25971059)
chr2 (191-246)||(12102633-12102688)
chr2 (15-57)||(18505718-18505760)
chr2 (19-85)||(21565846-21565912)
chr2 (13-85)||(28522842-28522912)
chr2 (17-73)||(18417356-18417412)
chr2 (18-78)||(22266350-22266410)
[»] scaffold0012 (3 HSPs)
scaffold0012 (2-78)||(103701-103777)
scaffold0012 (15-82)||(55796-55863)
scaffold0012 (13-85)||(52697-52769)
[»] chr5 (25 HSPs)
chr5 (12-85)||(6129712-6129786)
chr5 (12-85)||(19068711-19068784)
chr5 (2-85)||(29998578-29998662)
chr5 (13-85)||(21711556-21711628)
chr5 (12-75)||(5781097-5781160)
chr5 (2-85)||(35341877-35341959)
chr5 (186-260)||(19068879-19068952)
chr5 (15-85)||(34995469-34995539)
chr5 (2-118)||(28682764-28682882)
chr5 (2-73)||(39324353-39324424)
chr5 (15-73)||(11725648-11725706)
chr5 (13-85)||(2259415-2259485)
chr5 (16-85)||(10720869-10720938)
chr5 (15-64)||(21877921-21877970)
chr5 (15-68)||(33764508-33764561)
chr5 (13-85)||(15614725-15614797)
chr5 (15-85)||(13642828-13642898)
chr5 (191-248)||(5781286-5781342)
chr5 (18-85)||(21027039-21027109)
chr5 (18-85)||(24765524-24765589)
chr5 (18-65)||(28637626-28637673)
chr5 (26-85)||(32038451-32038510)
chr5 (2-68)||(12851807-12851873)
chr5 (20-85)||(17065284-17065350)
chr5 (13-85)||(4120507-4120579)
[»] scaffold0029 (1 HSPs)
scaffold0029 (2-118)||(129375-129492)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-118)||(307192-307309)
[»] chr7 (35 HSPs)
chr7 (13-81)||(1537976-1538044)
chr7 (184-247)||(24573856-24573919)
chr7 (12-85)||(11295387-11295461)
chr7 (186-248)||(11295557-11295619)
chr7 (2-119)||(14073741-14073860)
chr7 (2-119)||(14383769-14383888)
chr7 (15-85)||(22849544-22849614)
chr7 (25-85)||(1633292-1633352)
chr7 (2-69)||(12163399-12163466)
chr7 (2-75)||(28780179-28780252)
chr7 (12-75)||(3399568-3399631)
chr7 (19-85)||(4463454-4463521)
chr7 (3-78)||(24573678-24573753)
chr7 (193-282)||(9411420-9411503)
chr7 (17-73)||(1862349-1862405)
chr7 (2-78)||(12727796-12727872)
chr7 (18-85)||(32021954-32022022)
chr7 (15-78)||(18270316-18270379)
chr7 (43-85)||(9411261-9411303)
chr7 (16-85)||(17157577-17157647)
chr7 (186-244)||(28780013-28780071)
chr7 (3-64)||(1748315-1748376)
chr7 (191-248)||(17157934-17157991)
chr7 (191-247)||(3410194-3410250)
chr7 (17-57)||(20936834-20936874)
chr7 (18-85)||(28937335-28937403)
chr7 (18-73)||(980919-980974)
chr7 (15-85)||(9062065-9062136)
chr7 (186-245)||(14073623-14073682)
chr7 (186-245)||(14383651-14383710)
chr7 (18-65)||(37375017-37375064)
chr7 (18-85)||(4407432-4407500)
chr7 (17-54)||(9114529-9114566)
chr7 (2-77)||(11842750-11842826)
chr7 (18-85)||(15468278-15468346)
[»] scaffold0009 (1 HSPs)
scaffold0009 (2-85)||(1501-1584)
[»] scaffold0911 (1 HSPs)
scaffold0911 (25-118)||(2249-2343)
[»] scaffold0607 (2 HSPs)
scaffold0607 (2-75)||(314-387)
scaffold0607 (13-118)||(6260-6368)
[»] scaffold0437 (2 HSPs)
scaffold0437 (13-85)||(11402-11474)
scaffold0437 (2-85)||(14337-14421)
[»] scaffold0068 (1 HSPs)
scaffold0068 (13-85)||(2282-2354)
[»] scaffold1667 (1 HSPs)
scaffold1667 (18-85)||(726-792)
[»] scaffold0238 (1 HSPs)
scaffold0238 (19-78)||(4434-4493)
[»] scaffold0044 (1 HSPs)
scaffold0044 (18-85)||(20847-20913)
[»] scaffold0007 (1 HSPs)
scaffold0007 (2-84)||(173857-173939)
[»] scaffold0291 (2 HSPs)
scaffold0291 (2-78)||(21881-21957)
scaffold0291 (13-85)||(15568-15640)
[»] scaffold0061 (1 HSPs)
scaffold0061 (17-73)||(39734-39790)
[»] scaffold0017 (1 HSPs)
scaffold0017 (17-73)||(158989-159045)
[»] scaffold0265 (1 HSPs)
scaffold0265 (15-78)||(19588-19651)
[»] scaffold0063 (1 HSPs)
scaffold0063 (15-85)||(63569-63640)
[»] scaffold0020 (1 HSPs)
scaffold0020 (2-57)||(123852-123907)
[»] scaffold0363 (1 HSPs)
scaffold0363 (15-57)||(5316-5358)
[»] scaffold0013 (1 HSPs)
scaffold0013 (18-83)||(100967-101031)
[»] scaffold0546 (1 HSPs)
scaffold0546 (17-73)||(5893-5949)
[»] scaffold0195 (2 HSPs)
scaffold0195 (13-85)||(9005-9076)
scaffold0195 (13-85)||(14394-14465)
[»] scaffold0134 (1 HSPs)
scaffold0134 (17-73)||(2481-2537)
[»] scaffold0109 (1 HSPs)
scaffold0109 (17-73)||(7358-7414)
[»] scaffold0216 (1 HSPs)
scaffold0216 (19-78)||(15109-15168)
[»] scaffold0125 (1 HSPs)
scaffold0125 (2-57)||(35517-35572)
[»] scaffold0093 (1 HSPs)
scaffold0093 (15-78)||(16019-16082)
[»] scaffold0553 (1 HSPs)
scaffold0553 (2-118)||(7506-7624)
[»] scaffold0292 (1 HSPs)
scaffold0292 (2-68)||(21225-21291)
[»] scaffold0001 (1 HSPs)
scaffold0001 (15-57)||(20692-20734)
[»] scaffold1821 (1 HSPs)
scaffold1821 (17-73)||(980-1036)
[»] scaffold0166 (1 HSPs)
scaffold0166 (18-85)||(8021-8086)
[»] scaffold0356 (1 HSPs)
scaffold0356 (2-64)||(13734-13796)
[»] scaffold0196 (1 HSPs)
scaffold0196 (2-52)||(785-835)
[»] scaffold0045 (1 HSPs)
scaffold0045 (20-66)||(80342-80388)
[»] scaffold0015 (1 HSPs)
scaffold0015 (186-244)||(2291-2349)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 29821006 - 29820902
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 283  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29821006 acaccataaaactgattatgtaaatttgtagttgggtaaaccacatctatcccgaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 29820907  T
Q  284 gatcc 288  Q
    |||||    
T  29820906 gatcc 29820902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 29840932 - 29840849
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  29840932 catcaagaaacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgccgccaatctctaaaattttatt 29840849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 26867516 - 26867446
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||| ||||||    
T  26867516 catcgacatcccaactaggttggcacctcgggaaacctccatcctacgccgccaaactctaaaaatttatt 26867446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 16290927 - 16290844
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  ||||| |||||||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||| |||||    
T  16290927 catcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgctgccaaactctaaaatattatt 16290844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 16890032 - 16889962
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||| ||||||    
T  16890032 catcgacatcccaactaggttggcaccccgagatacctccatcttatgccgccaaactcaaaaaatttatt 16889962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 10568307 - 10568391
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  |||||||||| | ||||||||||||||||| |||||||| |||||| ||||||||||||||||||| ||||||||    
T  10568307 catcaagaggcaacatcgacttaccaactaggttggcaccccgagaaacttccatcctatgccgccaaactctaaagattttatt 10568391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 17274781 - 17274705
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  ||||||||||||||||||| ||||||||||  |||||| ||||||| ||||| ||||||||||||||    
T  17274781 catcaagaggcaacatcgacatcccaacttggttggcaccgtgagaaatctccatcctatgctgccaaactctaaaa 17274705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 17274602 - 17274539
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatca 247  Q
    ||||| ||||||| |||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  17274602 acaccgtaaaacaaattatggaaatatgtcgttgggtaaaccacatctatccctaaagaaatca 17274539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 41600795 - 41600712
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  ||||||||| ||||||||||| |||||||| |||||||| | |||| |||||||| |||||||||||| |||||    
T  41600795 catcaagaggcaacatcgatatcccaactagattggcaccccgagaaactttcatcctatgccgctaaactctaaaatattatt 41600712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 6001483 - 6001409
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta-aaattttatt 85  Q
    |||||||||||| |||||||||||| |||| |||||||||| |||| ||| ||||||||||||| ||||||||||    
T  6001483 caacatcgacattccaactaggttgacaccgcgagaaaccttcatcctataccgccaaactctagaaattttatt 6001409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 23595448 - 23595330
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttattnnnnnnngggaaaaa 100  Q
    ||||||||  || ||||||||||||||||||||||| |||  |||| ||||||||| ||||||||||||||| ||| ||||||||       ||||||||    
T  23595448 catcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcctatgccgccaaactcaaaagattttattaaaaaaggggaaaaa 23595349  T
Q  101 taattac-aaaggaggggg 118  Q
    || |||| |||||||||||    
T  23595348 tatttacaaaaggaggggg 23595330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 23604370 - 23604252
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttattnnnnnnngggaaaaa 100  Q
    ||||||||  || ||||||||||||||||||||||| |||  |||| ||||||||| ||||||||||||||| ||| ||||||||       ||||||||    
T  23604370 catcaagaggcatcatcgacatcccaactaggttggtaccctgagagacctccatcctatgccgccaaactcaaaagattttattaaaaaaggggaaaaa 23604271  T
Q  101 taattac-aaaggaggggg 118  Q
    || |||| |||||||||||    
T  23604270 tatttacaaaaggaggggg 23604252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 26657727 - 26657662
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    |||| |||||||||||||| |||||||| ||| |||||||||||| |||||| |||||||||||||    
T  26657727 aacaccgacatcccaactaagttggcacttcgggaaacctccatcctatgccaccaaactctaaaa 26657662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 45268842 - 45268915
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    ||||||||  |||||||||| | ||||| ||||||||||| |||||||||||| || |||||||||||||||||    
T  45268842 catcaagaggcaacatcgacttaccaaccaggttggcaccccgagaaacctccttcctatgccgccaaactcta 45268915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 21593254 - 21593170
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  || ||||||||| ||||||||||||||||| ||||| |||| |||| ||||||||||||||| ||| ||||||||    
T  21593254 catcaagaggcatcatcgacattccaactaggttggcaccccgagagaccttcatcctatgccgccaaactcaaaagattttatt 21593170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 24184769 - 24184841
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||| | || ||| |||||||| ||||||||||| |||||||| ||||||    
T  24184769 aacaccgacatcccaactaggttggcatcccgggaaccctccatcctatgccgccaatctctaaaactttatt 24184841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 282
Target Start/End: Original strand, 17960101 - 17960192
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaac 282  Q
    |||||||| |||| |||| | |||||||||||||||||||||| || |||||||||||  ||||||| | |||| |||||||| || |||||    
T  17960101 aaaacagactatggaaatctatagttgggtaaaccacatctattccgaaagaaatcaacgttcaactgagtaggaagagaagaaaggcaaac 17960192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 14413395 - 14413353
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  14413395 catcgacatcccaactaggttggcacctcgagacacctccatc 14413353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 15234786 - 15234852
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||| ||| |||||||||||||||  ||||||||||| |||| | ||||||||||||||||||||    
T  15234786 gacatctcaattaggttggcacctcggaaaacctccatcctatgtctccaaactctaaaattttatt 15234852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 29250273 - 29250332
Alignment:
Q  25 ccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||| | || ||||||||| || |||||||||||||||||||||||||||    
T  29250273 ccaactaggttggcatc-cgggaaacctccgtcctatgccgccaaactctaaaattttatt 29250332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 10568529 - 10568588
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaat 245  Q
    |||| ||||||||||| | |||| ||||||| ||||||||||||||||||| ||||||||    
T  10568529 accaaaaaacagattaaggaaatctgtagttaggtaaaccacatctatcccgaaagaaat 10568588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 17959917 - 17959976
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaac 71  Q
    |||||||||||||| |||||||| |||||| |||||||||| |||| ||| |||||||||    
T  17959917 caacatcgacatcctaactaggtaggcaccacgagaaaccttcatcctataccgccaaac 17959976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 6001314 - 6001252
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaa 248  Q
    |||| |||| |||| ||| | |||||||||| ||||||||||| |||||||||||||||||||    
T  6001314 accaaaaaatagatcatggacatttgtagttaggtaaaccacaactatccctaaagaaatcaa 6001252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 71
Target Start/End: Original strand, 26393360 - 26393418
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaac 71  Q
    |||| |||||||||||||| |||| |||| || |||||||||||| |||||||||||||    
T  26393360 aacaacgacatcccaactaagttgccaccccgcgaaacctccatcctatgccgccaaac 26393418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 21499358 - 21499427
Alignment:
Q  11 acaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaatt 80  Q
    |||||| |||||||||||||||||||||||| |   ||||||| ||| || ||||||||||||| |||||    
T  21499358 acaacaccgacatcccaactaggttggcaccgcagaaaacctcaatcctacgccgccaaactctgaaatt 21499427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 11837195 - 11837155
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  11837195 tcgacatcccaactaggttggcaccccgagatacctccatc 11837155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 16325651 - 16325708
Alignment:
Q  26 caactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||   ||||||||||| |||||||||  ||||||||||||||||    
T  16325651 caactaggttggcacctcagaaaacctccatcctatgccgcc--actctaaaattttatt 16325708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 19742113 - 19742037
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc-gccaaactctaaa 77  Q
    ||||| || |||||| |||||||||||||||||||||||| || ||| |||||||| | |||| ||||| |||||||    
T  19742113 catcaggagacaacaccgacatcccaactaggttggcaccccgggaagcctccatcctgtgcctgccaatctctaaa 19742037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 23124051 - 23124011
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  23124051 tcgacatcccaactaggttggcaccccgagatacctccatc 23124011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 4206432 - 4206499
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc-taaaattttatt 85  Q
    ||||||| |||||||||| |||  | ||| ||||||||| ||||||||||||||| ||||||||||||    
T  4206432 gacatcctaactaggttgacactccaagagacctccatcctatgccgccaaactcataaaattttatt 4206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 17802740 - 17802815
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa 77  Q
    ||||||||  |||||| || ||| |||||||||||||| | |||||||||| |||| |||||||  ||||||||||    
T  17802740 catcaagaggcaacattgatatctcaactaggttggcatcccgagaaaccttcatcctatgccgttaaactctaaa 17802815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 43856173 - 43856118
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||||||||||||||||||||||| ||   |||||||||| | |||||||||||||    
T  43856173 cgacatcccaactaggttggcaccccgcagaacctccatcctgtgccgccaaactc 43856118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 45269020 - 45269079
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaat 245  Q
    |||| ||||||||||| | |||| | ||||| ||||||||||||||||||| ||||||||    
T  45269020 accaaaaaacagattaagaaaatctatagttaggtaaaccacatctatcccgaaagaaat 45269079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 14335365 - 14335295
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  |||||||| |||| ||| ||||| ||||||||| ||||||||||| ||| |||| ||||||    
T  14335365 catcgacaatccaactagattggtaccccgagatacctccatcctatgccgccaagctcgaaaaatttatt 14335295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 11620435 - 11620491
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||| ||||||||| ||||| | | ||||| | |||||||||||||    
T  11620435 tcgacatcccaactatgttggcaccccgagacatcgccatcctttgccgccaaactc 11620491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18036834 - 18036878
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    |||| |||||||||||||| ||||||||| |||| ||||||||||    
T  18036834 aacaccgacatcccaactatgttggcaccccgaggaacctccatc 18036878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 33040766 - 33040870
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 283  Q
    |||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  33040766 acaccataaaacagattatggaaatctgtagttgggtaaaccacgtccatccctaaagaaatcaacatttaactcattaggaagagaagacagccaaacc 33040865  T
Q  284 gatcc 288  Q
    |||||    
T  33040866 gatcc 33040870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 33040582 - 33040697
Alignment:
Q  3 atcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttattnnnnnnngggaaaaata 102  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||       ||  ||||||    
T  33040582 atcaagagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcatatgccgtcaaactctaaaattttattaaaaaaaggagaaaata 33040681  T
Q  103 attacaaaggaggggg 118  Q
    ||||||||||||||||    
T  33040682 attacaaaggaggggg 33040697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 6192649 - 6192577
Alignment:
Q  9 aaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattt 81  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  6192649 aaacatcatcgacatcccaactaggttggcacctcgagatacctccatcttatgccgccaaactcgaaaattt 6192577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 8667105 - 8667187
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  |||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  8667105 catcaagaggcaacatcgacatcctaactaggttgg-accccgagaaacctccatcctatgccgccaaactctaaaatattatt 8667187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 44673860 - 44673956
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 283  Q
    ||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||        ||||||||||||||||||| || ||||||    
T  44673860 acaccataaaacaaattatggaaatctgtagtttggtaaaccacatctatccctaaagaaatc--------actcattagggagagaagatagtcaaacc 44673951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 39406824 - 39406897
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    ||||||||  |||||||||| | ||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  39406824 catcaagaggcaacatcgacttaccaactaggttggcaccccgagaaacctccatcctatgccgccaaactcta 39406897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 44673682 - 44673758
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  |||||||||||||||||||||||||||||| ||  ||| ||||||| ||||||||||||||||||||    
T  44673682 catcaagaggcaacatcgacatcccaactaggttggcaccccgcaaaatctccatcctatgccgccaaactctaaaa 44673758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 25219713 - 25219641
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||| |||||||||||||||||||| ||||| |||  | |||||||||||||||||||||||||||    
T  25219713 aacaccgacattccaactaggttggcacctcgggaaacttccgccctatgccgccaaactctaaaattttatt 25219641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 18234300 - 18234230
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||| || |||| ||||||    
T  18234300 catcgacattccaactaggttggcaccccgagatacctccatcctatgccgccaaattcaaaaaatttatt 18234230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 23795517 - 23795451
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttat 84  Q
    |||||||||||||||||||||| |  | |||||||||||| ||||||| ||||||||||||||||||    
T  23795517 cgacatcccaactaggttggcatcctgtgaaacctccatcctatgccgtcaaactctaaaattttat 23795451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 11485219 - 11485284
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc-taaaattt 81  Q
    ||||||||||||||||||||||||| |||||  |||||||| ||||||||||||||| ||||||||    
T  11485219 tcgacatcccaactaggttggcaccccgagaggcctccatcctatgccgccaaactcataaaattt 11485284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 1924674 - 1924775
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc-taaaattttattnnnnnnngggaaaaataattacaaagga 113  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| ||||  |||| ||||||       |||||||||||||||||| ||    
T  1924674 catcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaaaatttattaaaaaaggggaaaaataattacaaaaga 1924773  T
Q  114 gg 115  Q
    ||    
T  1924774 gg 1924775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 7190145 - 7190083
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc 64  Q
    ||||||||  || ||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  7190145 catcaagaggcatcatcgacatcccaactaggttggcacctcgagagacctcaatcctatgcc 7190083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 8667300 - 8667393
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 283  Q
    ||||| || ||||||||||| |||| || |||||||||||||||| ||||||||||||||| ||      | |||||||||||||||||||| |||||||    
T  8667300 acaccctacaacagattatg-aaatctgaagttgggtaaaccacaactatccctaaagaaaaca------acctcattagggagagaagacaaccaaacc 8667392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 4936085 - 4936025
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||| ||||||||| || ||||||| |||||||  |||||||||||    
T  4936085 aacatcgacatcccaactaagttggcaccccgcgaaaccttcatcatacaccgccaaactc 4936025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 19904620 - 19904680
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatg 62  Q
    |||||||| ||| ||||||||||||||||||||||||||| | ||| ||||||||| ||||    
T  19904620 catcaagagacatcatcgacatcccaactaggttggcaccccaagagacctccatcctatg 19904680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 44453099 - 44453171
Alignment:
Q  14 acatcgacatcccaactaggttggcacctcgagaaacctccatcatat-gccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||||||||| || ||| ||||| || |||  ||| |||||||||||||||||||    
T  44453099 acatcgacatcccaactaggttggcaccccgggaagcctccgtcctatacccgtcaaactctaaaattttatt 44453171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 3007303 - 3007366
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||| ||||||||||||||||| ||| ||||| ||||||||| |||||||||| |||| ||||    
T  3007303 catcgtcatcccaactaggttggtaccccgagacacctccatcctatgccgccacactcgaaaa 3007366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 39407004 - 39407063
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaat 245  Q
    |||| ||||||||||| | |||| ||||||| ||||||||||||||||||| ||||||||    
T  39407004 accaaaaaacagattaaggaaatatgtagttaggtaaaccacatctatcccgaaagaaat 39407063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 18025411 - 18025529
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc--taaaattttattnnnnnnngggaaaa 99  Q
    |||||||| ||  ||||||||||||||||||||||||||| ||| | ||||||||| ||| | |  | ||||   |||||||||||       |||||||    
T  18025411 catcaagagacgtcatcgacatcccaactaggttggcaccccgaaatacctccatcctatactggtacactcaagaaaattttattaaaaaaagggaaaa 18025510  T
Q  100 ataattacaaaggaggggg 118  Q
    |||||||||||||||||||    
T  18025511 ataattacaaaggaggggg 18025529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 34512131 - 34512013
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc-taaaattttattnnnnnnngggaaaaa 100  Q
    ||||||||  || ||||||||||||||||||||||||||| || || |||| |||  || || |||||||||  |||||||||||       ||||||||    
T  34512131 catcaagaggcatcatcgacatcccaactaggttggcaccccgggagaccttcattctacgctgccaaactcgaaaaattttattaaaaaaggggaaaaa 34512032  T
Q  101 taattac-aaaggaggggg 118  Q
    ||||||| |||||||||||    
T  34512031 taattacaaaaggaggggg 34512013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 11415993 - 11416065
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||| |||||||||  |  ||||| ||||  ||||| |||||||||||||||||||||    
T  11415993 aacaccgacatcccaactaagttggcaccctggaaaacccccattctatgctgccaaactctaaaattttatt 11416065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 20380221 - 20380297
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || ||||| ||||||||||||||||  ||| ||||| ||||||||| ||||||||||| ||| ||||    
T  20380221 catcaagaggcatcatcggcatcccaactaggttgaaaccccgagagacctccatcttatgccgccaatctcaaaaa 20380297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 549385 - 549355
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactag 32  Q
    |||||||||||||||||||||||||||||||    
T  549385 catcaagaaacaacatcgacatcccaactag 549355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 18117419 - 18117481
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc 64  Q
    |||||||| ||  |||||||||||||||||||||| ||||||||||  | |||||| ||||||    
T  18117419 catcaagagacctcatcgacatcccaactaggttgacacctcgagaggcgtccatcctatgcc 18117481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 10423989 - 10424091
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 283  Q
    ||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||| || ||    
T  10423989 acaccataaaacagattatgtaa-tctgtagttgagtaaaccacatttatccctaaagaaatcagcattcaactcattagggagagaagacagctaatcc 10424087  T
Q  284 gatc 287  Q
    ||||    
T  10424088 gatc 10424091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 10423808 - 10423925
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttattnnnnnnngggaaaaat 101  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||       ||| |||||    
T  10423808 catcaagaggcaacatcgacatcccaactaggttggcaccccgagaaacctccatcttatgccctcaaactctaaaattttattaaaaaagggggaaaat 10423907  T
Q  102 aattacaaaggaggggga 119  Q
    || |||||||||||||||    
T  10423908 aagtacaaaggaggggga 10423925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 907851 - 907945
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaaccga 285  Q
    |||||||| |||| |||| |||||||||| | |||||||| |||||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  907851 aaaacagactatggaaatctgtagttgggaacaccacatccatccctaaagaaatcaactttcaactcattagggagagcagacagccaaaccga 907945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 34528937 - 34529008
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttat 84  Q
    |||| |||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||    
T  34528937 aacagcgacatcccaactaggttggcaccccgggaaacctccatcctatgccgccaaactctaaaattttat 34529008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 1624237 - 1624321
Alignment:
Q  200 tatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcatta-gggagagaagacagccaaacc 283  Q
    |||| |||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  1624237 tatgaaaatctgtagttgggaaaaccacatatatccctaaagaaatcaacattcaactcattaggggagagaagacaaccaaacc 1624321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 907666 - 907749
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||| ||| |||||||||||||||||| ||||||||  |||| ||||||||| |||||||||||||||||||| ||||||    
T  907666 catcaagagacatcatcgacatcccaactagattggcaccctgagagacctccatcctatgccgccaaactctaaaaatttatt 907749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 42264478 - 42264406
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||  ||||||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||    
T  42264478 aacatcgacaaaccaactaggttggtatcccgagaaacctccatcatataccgccaaactctaaaattttatt 42264406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 12629267 - 12629339
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||||||||||||||| |||||| | || ||||||||| || |||||||||||||||||||||||||||    
T  12629267 aacaccgacatcccaactagattggcatcccgggaaacctccgtcctatgccgccaaactctaaaattttatt 12629339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 18332719 - 18332790
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||||| ||   |||||||||| ||||||||||||||| |||||||||||    
T  18332719 aacatcgacatcccaactaggttggcaccccggagaacctccatcctatgccgccaaactc-aaaattttatt 18332790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 27035859 - 27035943
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  || ||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  27035859 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgccgccaaactcaaaagattttatt 27035943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 34517750 - 34517674
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    |||||||||  ||||||||||||||||  ||||||||| | ||||||||||||||| ||||| ||||||||||||||    
T  34517750 catcaagaagaaacatcgacatcccaataaggttggcatcccgagaaacctccatcctatgctgccaaactctaaaa 34517674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 13309386 - 13309456
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaact 72  Q
    ||||||||  || ||||||||||||||||||||||||||| ||||| ||||||||| || |||||||||||    
T  13309386 catcaagaggcatcatcgacatcccaactaggttggcaccccgagagacctccatcctaagccgccaaact 13309456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 41574324 - 41574388
Alignment:
Q  20 acatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||| ||||  | |||||||||||| |||||||||||||||||||||||||||    
T  41574324 acatcccaactaggttgacaccctg-gaaacctccatcctatgccgccaaactctaaaattttatt 41574388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 2583086 - 2583170
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  || ||||||||||||||||| ||||||||||| ||| |||||| || ||||||||||||||| ||| ||||||||    
T  2583086 catcaagaggcatcatcgacatcccaactaagttggcacctcaagagacctccgtcgtatgccgccaaactcaaaagattttatt 2583170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 31893169 - 31893101
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||| | |||||| |||||||| |||| ||| |||||||||||||||||||    
T  31893169 cgacatcccaactaggttggcatcccgagaagcctccatcctatgcccgtcaaactctaaaattttatt 31893101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 21813221 - 21813158
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||| ||||    
T  21813221 catcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaa 21813158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 20471220 - 20471150
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||| |||||| |||||| || | |||||||  ||||||||| |||||||||||||||||||||    
T  20471220 catcgacatccgaactagtttggcatcttgggaaacctttatcatatgctgccaaactctaaaattttatt 20471150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 20560317 - 20560387
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||| |||||| |||||| || | |||||||  ||||||||| |||||||||||||||||||||    
T  20560317 catcgacatccgaactagtttggcatcttgggaaacctttatcatatgctgccaaactctaaaattttatt 20560387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 19100344 - 19100273
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||| ||||||||||||||| | || |||||| || || ||||||| |||||||||||||||||||    
T  19100344 aacatcgacataccaactaggttggcatc-cgggaaaccaccgtcctatgccgtcaaactctaaaattttatt 19100273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 43021770 - 43021826
Alignment:
Q  30 taggttggcacctcgag-aaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||||||| || | ||||||||||| |||||||||||||||||||||||||||    
T  43021770 taggttggcaccccggggaaacctccatcctatgccgccaaactctaaaattttatt 43021826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 1624044 - 1624127
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  ||||||| | |||||||||||||||| ||| ||| ||| ||||||| ||  |||||||||||||||| ||||||    
T  1624044 catcaagaggcaacatcaatatcccaactaggttggtaccccgataaatctccatcctacaccgccaaactctaaaaatttatt 1624127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 8681368 - 8681435
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    |||||| ||| |||||||| |||||||||| ||||| || |||| |||||||||||||||||||||||    
T  8681368 gacatctcaattaggttggtacctcgagaagcctccgtcctatgtccgccaaactctaaaattttatt 8681435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 246
Target Start/End: Original strand, 11779519 - 11779574
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatc 246  Q
    |||||| | |||| |||||||||||||||||| ||||||||||||| |||||||||    
T  11779519 aaaacaaactatggaaatttgtagttgggtaatccacatctatcccgaaagaaatc 11779574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 19088928 - 19088869
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    |||||| ||| |||||||| |||| | |||||||||||| ||||||||||||||||||||    
T  19088928 gacatctcaattaggttggaaccttgggaaacctccatcttatgccgccaaactctaaaa 19088869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 20808763 - 20808834
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||||||| ||| ||||||||||||||||| |||| ||| | || | ||||||||| |||||||||||||||    
T  20808763 catcaagagacatcatcgacatcccaactaagttgacactttgatagacctccatcctatgccgccaaactc 20808834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 21464841 - 21464786
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    |||||||| ||  ||||||||||||||||||||||||||| ||||| |||||||||    
T  21464841 catcaagagacgtcatcgacatcccaactaggttggcaccccgagatacctccatc 21464786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 21487859 - 21487914
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||||||||||||||||||||||| |||  |||| ||||| |||||||||||||||    
T  21487859 cgacatcccaactaggttggcaccccgaagaacccccatcctatgccgccaaactc 21487914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 35877045 - 35877006
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacc 41  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  35877045 catcaagaagcaacatcgacatcccaactaggttggcacc 35877006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 13534370 - 13534300
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||| || ||| ||| ||||| | ||||||||  |||||||| |||||||||||||||||||||    
T  13534370 catcgacatccaaattagtttgacaccttgggaaacctctgtcatatgctgccaaactctaaaattttatt 13534300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 19068630 - 19068688
Alignment:
Q  27 aactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||| || |||||||||||||||||| || |||||  ||||||||||||||||||||    
T  19068630 aactagattagcacctcgagaaacctccgtcctatgctcccaaactctaaaattttatt 19068688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 19116520 - 19116578
Alignment:
Q  27 aactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||| || |||||||||||||||||| || |||||  ||||||||||||||||||||    
T  19116520 aactagattagcacctcgagaaacctccgtcctatgctcccaaactctaaaattttatt 19116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 23487509 - 23487439
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||| |||||||| |||| ||| ||||| ||||||||| ||||||||||| ||| |||| ||||||    
T  23487509 catcgacattccaactagattggtaccccgagatacctccatcctatgccgccaagctcgaaaaatttatt 23487439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 34507894 - 34507959
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||| |||||||||||||||  ||| ||||||||| || ||||| |||||||||||||||||||||    
T  34507894 gacataccaactaggttggcat-tcgggaaacctccgtcctatgcagccaaactctaaaattttatt 34507959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 10433252 - 10433199
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaac 71  Q
    |||||||||||||||||| ||||||||   |||||||||||||||| |||||||    
T  10433252 cgacatcccaactaggtttgcacctcggagaacctccatcatatgctgccaaac 10433199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 3833449 - 3833517
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||||| || ||| ||||| || |||| ||| | |||||||||||||||||    
T  3833449 cgacatcccaactaggttggcaccccgggaagcctccgtcctatgcccgtctaactctaaaattttatt 3833517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 11779332 - 11779416
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  ||||||||  ||||||| |||||||||||| |||| || ||||||| | ||||| ||||||||||| ||||||||    
T  11779332 catcaagaggcaacatcggtatcccaattaggttggcaccccgagtaaactccatcctctgccgtcaaactctaaagattttatt 11779416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 22522820 - 22522860
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  22522820 tcgacatcccaactaggttggcaccccgagatacctccatc 22522860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 16280489 - 16280426
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||| |||||| ||| |||| ||||    
T  16280489 catcgacatcccaattagattggcaccccgagacacctccatcctatgccaccacactcgaaaa 16280426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 27177670 - 27177599
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||| |||||| | ||||||||||||||||||||||||  ||||| | | ||||| | |||||||||||||    
T  27177670 catcaggaaacatcctcgacatcccaactaggttggcactccgagacatcgccatcctttgccgccaaactc 27177599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 16816259 - 16816322
Alignment:
Q  20 acatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||| ||||| | |||||||||| ||||| | |||||||  ||||||||||    
T  16816259 acatcccaactaggttggcgcctcggggaacctccatcctatgcagtcaaactc--aaattttatt 16816322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 24961919 - 24961869
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacct 52  Q
    ||||| || ||| ||||||||||||||||||||||||||| ||||| ||||    
T  24961919 catcaggagacatcatcgacatcccaactaggttggcaccccgagatacct 24961869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 41343843 - 41343905
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc 64  Q
    |||||||| ||  |||||||||||||||||||||| ||||||||||  | |||||| ||||||    
T  41343843 catcaagagacctcatcgacatcccaactaggttgacacctcgagaggcgtccatcctatgcc 41343905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 19054403 - 19054473
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||||| || | |||||||||| ||| | |||| ||||  ||||||||||    
T  19054403 aacaccgacatcccaactaggttggcaccccggggaacctccatcctatacagccacactc--aaattttatt 19054473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 15913549 - 15913609
Alignment:
Q  21 catcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattt 81  Q
    ||||| ||||||||||||||| ||   ||| |||||||||||||||||| ||| |||||||    
T  15913549 catcctaactaggttggcaccccgcagaacatccatcatatgccgccaatctcaaaaattt 15913609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 17122884 - 17122829
Alignment:
Q  18 cgacatcccaactaggttggcacctcg-agaaacctccatcatatgccgccaaactc 73  Q
    |||||||||||||||||||||||| || |||| ||| |||| |||||||||||||||    
T  17122884 cgacatcccaactaggttggcaccccgcagaaccct-catcctatgccgccaaactc 17122829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 28016056 - 28015984
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||| |||| |||| |  |||| |||| || ||| |||||||||| ||||||||||||    
T  28016056 aacaccgacatcccaactaagttgacaccccaggaaatctccgtcctattccgccaaactataaaattttatt 28015984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 29302952 - 29303000
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgc 63  Q
    |||||||||||||| |||||||||| |||||||  |||||||| |||||    
T  29302952 catcgacatcccaattaggttggcatctcgagaggcctccatcctatgc 29303000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 32943810 - 32943739
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||| |||| |||||||||| | || ||||||||| || ||||||||||||||| |||| ||||||    
T  32943810 aacaccgacataccaattaggttggcatc-cgggaaacctccgtcttatgccgccaaactcaaaaaatttatt 32943739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 34879934 - 34880006
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||| ||||||||||||||| ||| |||||||| || ||||  |   |||||||||||||||||    
T  34879934 aacaccgacatcctaactaggttggcaccccgaaaaacctccgtcctatgttgtacaactctaaaattttatt 34880006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 9351131 - 9351214
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  9351131 catcaatagacaacatcgacatcccaactaggttggcaccccgagaaacctccatcctatgccgccaaattctaaaattttatt 9351214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 9351313 - 9351417
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 283  Q
    |||||||||||  ||||| | |||| | ||||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||| ||||||    
T  9351313 acaccataaaaatgattaaggaaatctatagttgggtaaaccacatccatccctaaacaaatcagcattcaactcattagggagagaagacagacaaacc 9351412  T
Q  284 gatcc 288  Q
     ||||    
T  9351413 aatcc 9351417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 118
Target Start/End: Complemental strand, 14982451 - 14982344
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt-nnnnnnngggaaaaataattacaaa 110  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||||| |||||||        ||| ||||||||||||||    
T  14982451 caacatcgacatcccaacttggttgacacctcgagaaacttccatcctatgccgccaaactctaaatttttattaaaaaaggggggaaaataattacaaa 14982352  T
Q  111 ggaggggg 118  Q
    ||||||||    
T  14982351 ggaggggg 14982344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 14372193 - 14372269
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  |||||||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||||||    
T  14372193 catcaagaggcaacatcgacatcccaactaggttggcactccgagaaatctccatcctatgccgccaaactctaaaa 14372269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 3057008 - 3056937
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||    
T  3057008 catcaagagacaacatcgacatcccaactaagttggtaccccgagaaacctccatcctatgccgccaaactc 3056937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 24127844 - 24127907
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  24127844 catcgacatcccagctaggttggcacctcgagaaacctccatcctatgccgccaaactcgaaaa 24127907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 32569891 - 32569817
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta-aaattttatt 85  Q
    ||||||||||||||||||||| ||| |||||||||||||||| ||| ||||||||||||||||| ||||||||||    
T  32569891 caacatcgacatcccaactagattgacacctcgagaaacctctatcctatgccgccaaactctagaaattttatt 32569817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 26522783 - 26522711
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactct--aaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||  |||||||||||    
T  26522783 catcgacatcccaactaggttggcaccccgagagacctccatcctatgccgccaaactctagaaaattttatt 26522711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 12436012 - 12435942
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||| |||| ||||||    
T  12436012 catcgacatcccaactaggttggcaccccgacaaacctccatcctatgccgccaagctcaaaaaatttatt 12435942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 8462078 - 8462014
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgc 66  Q
    ||||||||  || ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8462078 catcaagaggcatcatcgacatcccaactaggttggcacctcgagagacctccatcctatgccgc 8462014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 10192923 - 10192847
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || |||||||||||||| |||||||||||||| ||| ||||||||| |||||||||| |||||||||    
T  10192923 catcaagaggcatcatcgacatcccaattaggttggcacctcaagagacctccatcctatgccgccacactctaaaa 10192847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 13565973 - 13565901
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||||||||||||||||||||||| || ||||||||| ||| ||| |||||||||||||||| ||||||    
T  13565973 aacaacgacatcccaactaggttggcacatcaagaaacctctatcctataccgccaaactctaaaaatttatt 13565901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 14641496 - 14641424
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||||| || ||| |||||||| ||||||||||| |||||||| ||||||    
T  14641496 aacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttatt 14641424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 14373755 - 14373851
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaacc 283  Q
    ||||||||||||||||||||  ||| |||| ||||||||||||||||||||||||||| | ||        ||||||||||||||||||||||| |||||    
T  14373755 acaccataaaacagattatggtaatctgtaattgggtaaaccacatctatccctaaagtattc--------actcattagggagagaagacagctaaacc 14373846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 20899033 - 20898950
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  ||||| |||||||||||||||||||||||| |  |||||||||| | ||||| ||||||||||||||| |||||    
T  20899033 catcaagaggcaacaccgacatcccaactaggttggcaccccaggaaacctccaccctatgctgccaaactctaaaatattatt 20898950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 70
Target Start/End: Original strand, 34338114 - 34338169
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaa 70  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||    
T  34338114 catcgacatcccaactaggttggcaccccgagagacctccatcctatgccgccaaa 34338169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 9696878 - 9696948
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||| ||||||||  ||||| ||||||||| ||||||||||||||| |||| ||||||    
T  9696878 catcgacatcccaactaagttggcacgccgagatacctccatcctatgccgccaaactcgaaaaatttatt 9696948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 18306748 - 18306817
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||| |||| ||||||    
T  18306748 catcgacatcccaactaggttggcacc-cgagatacctccatcctatgccgtcaaactcgaaaaatttatt 18306817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 24353209 - 24353282
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta-aaattttatt 85  Q
    ||||||||||| |||||||| |||||||| ||||||||||| ||| | ||||||||||||||| ||||||||||    
T  24353209 aacatcgacataccaactagattggcaccccgagaaacctctatcctgtgccgccaaactctagaaattttatt 24353282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 8212273 - 8212345
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||||||  ||| |||||||||||| || |||||||||||| |||||||| ||||||||||||||||||    
T  8212273 aacagcgacatttcaattaggttggcaccccgcgaaacctccatcctatgccgctaaactctaaaattttatt 8212345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 31633600 - 31633672
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||||||||||||||| |||||| |  | ||||||||| || |||||||||||||||||||||||||||    
T  31633600 aacaccgacatcccaactagattggcatcctgggaaacctccgtcctatgccgccaaactctaaaattttatt 31633672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 26592529 - 26592604
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa 77  Q
    |||||||| | ||||  ||||| ||||||||||||| |||| | |||||||||||| |||||||||||||||||||    
T  26592529 catcaagagagaacactgacattccaactaggttggtaccttgggaaacctccatcctatgccgccaaactctaaa 26592604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 14982270 - 14982180
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaa 281  Q
    |||||||| |||| |||| || | || |||||| || |||||| ||||||||||||||  ||||| ||||||||||||||| |||||||||    
T  14982270 aaaacagactatggaaatctgaaatttggtaaatcatatctattcctaaagaaatcaactttcaagtcattagggagagaaaacagccaaa 14982180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 3546655 - 3546731
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || |||||||||  |||||||||||||||||||||| ||||||| | ||||||||||  ||||||||    
T  3546655 catcaagaggcatcatcgacatttcaactaggttggcacctcgagagacctccaccctatgccgccacgctctaaaa 3546731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 10138927 - 10138871
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| ||| |||||||||||    
T  10138927 tcgacatcccaactaggttggcaccccgagacacctctatcctataccgccaaactc 10138871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 27962065 - 27962121
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  27962065 tcgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 27962121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 3056814 - 3056734
Alignment:
Q  196 agattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaac 282  Q
    |||||||| |||| || |||||||||||||||| ||||||||||||||| ||      | |||||||||||||||||||| ||||||    
T  3056814 agattatggaaatctgaagttgggtaaaccacaactatccctaaagaaaaca------acctcattagggagagaagacaaccaaac 3056734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 19324814 - 19324759
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    |||||||| ||  ||||||||||||||||||||||||||| ||||| |||||||||    
T  19324814 catcaagagacgtcatcgacatcccaactaggttggcaccccgagatacctccatc 19324759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 24353376 - 24353450
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcat 260  Q
    |||| |||||| |||||| |||| | ||||   |||||||||||||||||||||||||||||| |||||| ||||    
T  24353376 accaaaaaacatattatggaaatctatagtcaagtaaaccacatctatccctaaagaaatcaacattcaattcat 24353450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 13575061 - 13574997
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa 77  Q
    |||| |||||||||||||||||||||||  || ||||||| |||| ||| ||||||| |||||||    
T  13575061 aacaccgacatcccaactaggttggcactccgggaaaccttcatcctataccgccaatctctaaa 13574997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 13577600 - 13577536
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa 77  Q
    |||| |||||||||||||||||||||||  || ||||||| |||| ||| ||||||| |||||||    
T  13577600 aacaccgacatcccaactaggttggcactccgggaaaccttcatcctataccgccaatctctaaa 13577536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 22705375 - 22705331
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||    
T  22705375 aacaccgacatcccaactaggttggcacctcgataaacatccatc 22705331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 22955815 - 22955759
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| | | ||||| | |||||||||||||    
T  22955815 tcgacatcccaactaggttggcaccccgagacatcgccatcctttgccgccaaactc 22955759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 23832578 - 23832634
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| | | ||||| | |||||||||||||    
T  23832578 tcgacatcccaactaggttggcaccccgagacatcgccatcctttgccgccaaactc 23832634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 33325861 - 33325932
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||| ||||||||| ||||| | || ||||||||| || ||||||| |||||||||||||||||||    
T  33325861 aacaccgacataccaactaggctggcatc-cgggaaacctccgtcctatgccgtcaaactctaaaattttatt 33325932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 841322 - 841383
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcga-gaaacctccatcatatgccgccaaactc 73  Q
    |||| |||||||||||||| ||||||||| ||| | |||||||||| |||| ||||||||||    
T  841322 aacaccgacatcccaactaagttggcaccccgagggaacctccatcctatgtcgccaaactc 841383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 9344549 - 9344472
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaat 79  Q
    |||||||| | |||| |||||||||||||||||||||||  ||  ||||||||| | |||||  |||||||| |||||    
T  9344549 catcaagagaaaacaacgacatcccaactaggttggcactccgcaaaacctccaccctatgcttccaaactcaaaaat 9344472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 11650892 - 11650839
Alignment:
Q  20 acatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||    | |||||||||| |||||||||||||||    
T  11650892 acatcccaactaggttggcaccctagggaacctccatcttatgccgccaaactc 11650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 13570518 - 13570461
Alignment:
Q  20 acatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa 77  Q
    ||||||||||||| |||||||| |||||||| | |||| ||| |||| ||||||||||    
T  13570518 acatcccaactagattggcaccccgagaaacattcatcctataccgcaaaactctaaa 13570461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 1110516 - 1110444
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||||||||||  || ||||||||  || |||||||||||| | ||||||||||||| ||||| |||||    
T  1110516 aacaacgacatcccatttaagttggcactccgcgaaacctccatcctttgccgccaaactcaaaaatattatt 1110444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 15141922 - 15141978
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaa 69  Q
    |||| |||||||||||||||||||||| | || ||||||| |||| | |||||||||    
T  15141922 aacaccgacatcccaactaggttggcaacccgggaaacctgcatcgtctgccgccaa 15141978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 24617751 - 24617795
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    |||| |||||||||||||||||||||||| ||  |||||||||||    
T  24617751 aacaccgacatcccaactaggttggcaccccggaaaacctccatc 24617795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 27990880 - 27990796
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    |||||||| ||| ||||||||||||| |||| |||||||| | | | ||||||||  |||||| |||||||| ||| ||||||||    
T  27990880 catcaagagacatcatcgacatcccatctagattggcaccccaaaagacctccattctatgccaccaaactcaaaagattttatt 27990796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 30509095 - 30509131
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctcc 54  Q
    ||||||||||||||  |||||||||||||||||||||    
T  30509095 cgacatcccaactaaattggcacctcgagaaacctcc 30509131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 30884455 - 30884390
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||| |||| ||| |||| |||||| ||| |||||||  ||| ||||||||||    
T  30884455 cgacatcccaactaggttgacaccccgataaacttccatcctataccgccaa--tctcaaattttatt 30884390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 2853 - 2777
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  2853 catcaagaggcaacatcgacatcccaactaggttggtacctcgagaaacctccatcctatgccgccaaactcaaaaa 2777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 36679 - 36755
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  36679 catcaagaggcaacatcgacatcccaactaggttggtacctcgagaaacctccaacttatgccgccaaactctaaaa 36755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 36889 - 36946
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaa 248  Q
    |||||||| |||| |||| ||||||| ||||| |||||| |||||| |||||||||||    
T  36889 aaaacagactatggaaatctgtagtttggtaatccacatatatcccaaaagaaatcaa 36946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 16416510 - 16416414
Alignment:
Q  192 aaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaaccgatcc 288  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||| ||| ||| ||||||    
T  16416510 aaacagattatataaatctgtagttgggaaaaccacatttatgcctaaagaaatcagcattcaactcattagggagagaagatagcgaaatcgatcc 16416414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 18517483 - 18517387
Alignment:
Q  192 aaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaaccgatcc 288  Q
    ||||||||||| ||||| |||||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||| ||| ||| ||||||    
T  18517483 aaacagattatataaatctgtagttgggaaaaccacatttatgcctaaagaaatcagcattcaactcattagggagagaagatagcgaaatcgatcc 18517387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 51661751 - 51661668
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||  ||||||| ||||||| |||||||||||||||||||    
T  51661751 catcaagaggcaacatcgacatcccaactaggttggcaccccgagaactctccatcctatgccgtcaaactctaaaattttatt 51661668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 26953969 - 26954041
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||| |||   |||||||||||||||||||||||||||||||||||||||    
T  26953969 aacaccgacatcccaactaggttggcatctcagaaaacctccatcatatgccgccaaactctaaaattttatt 26954041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 18517749 - 18517666
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  |||||||||||||||||||||||||||| | ||||| | ||||||| ||||||| |||||||||||||||||||    
T  18517749 catcaagaggcaacatcgacatcccaactaggttggcatcccgagatagctccatcctatgccgtcaaactctaaaattttatt 18517666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 1051335 - 1051399
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa 77  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  1051335 aacaccgacatcccaactaggttggcacctcgggaaacctccatcctaagccgccaaactctaaa 1051399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2928580 - 2928664
Alignment:
Q  1 tcatcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||||| |||||||||||| |||||||||||||||  |||||| ||||||||| ||||| || |||||||||||| |||||    
T  2928580 tcatcaagaagcaacatcgacattccaactaggttggcaattcgagagacctccatcttatgctgctaaactctaaaatattatt 2928664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 16038028 - 16037948
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaatttt 82  Q
    ||||||||  || |||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||||||    
T  16038028 catcaagaggcatcatcgacatctcaactaggttggaaccccgagagacctccatcctatgccgccaaactctaaaatttt 16037948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 19826429 - 19826492
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    |||||||||||||||||||||||||||||| | |||||||||| || |||||||||||||||||    
T  19826429 caacatcgacatcccaactaggttggcaccccaagaaacctccgtcctatgccgccaaactcta 19826492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 25760091 - 25760008
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  ||||| ||||||||||||||||||||||| |||  ||||||||||| ||||| ||||||||||||||| |||||    
T  25760091 catcaagaggcaacaccgacatcccaactaggttggcacttcggaaaacctccatcctatgctgccaaactctaaaatattatt 25760008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 16041573 - 16041497
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || |||||||||| |||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||    
T  16041573 catcaagaggcatcatcgacatctcaactaggttggaaccccgagagacctccatcctatgccgccaaactctaaaa 16041497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 10997487 - 10997416
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttat 84  Q
    |||| ||||||||||| |||||||||||| |||||||||||| || |||| || ||||||||||||||||||    
T  10997487 aacaccgacatcccaattaggttggcaccccgagaaacctccgtcttatgtcgtcaaactctaaaattttat 10997416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 26430328 - 26430212
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttattnnnnnnngggaaaaat 101  Q
    ||||||||  || ||||||||||| ||||||||||||||| ||  | ||||||||| ||||||||||||||||||||  |||||        ||||||||    
T  26430328 catcaagaggcatcatcgacatcctaactaggttggcaccccgtaatacctccatcctatgccgccaaactctaaaaaattattgaaaaagtggaaaaat 26430229  T
Q  102 aattacaaaggaggggg 118  Q
    |||||||||||| ||||    
T  26430228 aattacaaaggaagggg 26430212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 51661573 - 51661510
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatca 247  Q
    ||||||||||||| |||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  51661573 acaccataaaacaaattatggaaatctgtaattggataaaccacatctatccctaaagaaatca 51661510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 26430124 - 26430054
Alignment:
Q  215 ttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaaccga 285  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||  ||| |||||||| |||||||||||    
T  26430124 ttgggtaaaccacatctgtccctaaagaaatctacattcaactcagcaggaagagaagatagccaaaccga 26430054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 3580434 - 3580510
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || |||||| |||||||||||||||||||||||||| | ||||||| ||||||||||  ||||||||    
T  3580434 catcaagaggcatcatcgaaatcccaactaggttggcacctcgagagaactccatcctatgccgccatgctctaaaa 3580510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 16053524 - 16053448
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || |||||||||| ||||||||||| || | ||||||||||||||| ||||| ||||||||||||||    
T  16053524 catcaagaggcatcatcgacatctcaactaggttgacatcccgagaaacctccatcctatgctgccaaactctaaaa 16053448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 47165893 - 47165969
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || ||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||  ||||||||    
T  47165893 catcaagaggcatcatcgacatcccaactaggttggcaccccgagagaactccatcctatgccgccacgctctaaaa 47165969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 34796910 - 34796870
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  34796910 tcgacatcccaactaggttggcacctcgagatacctccatc 34796870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 3736539 - 3736497
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  3736539 catcgacatcccaactaggttggcaccccgagacacctccatc 3736497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 14674185 - 14674303
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc--taaaattttattnnnnnnngggaaaa 99  Q
    |||||||| ||  ||||||||||||||||||||||||||| ||| | ||||||||| ||| | |  | ||||   |||||||||||       |||||||    
T  14674185 catcaagagacgtcatcgacatcccaactaggttggcaccccgaaatacctccatcctatactggtacactcaagaaaattttattaaaaaaagggaaaa 14674284  T
Q  100 ataattacaaaggaggggg 118  Q
    |||||||||||||||||||    
T  14674285 ataattacaaaggaggggg 14674303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 5813566 - 5813639
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    ||||||||  |||||||||| | ||||||||||||||| | |||||||||| |||| ||||| | |||||||||    
T  5813566 catcaagaggcaacatcgacttaccaactaggttggcatcccgagaaaccttcatcctatgctgtcaaactcta 5813639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 19826604 - 19826660
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaa 248  Q
    |||| |||||||| |||| ||||||| |||||||||||||||| ||||||||||||||    
T  19826604 aaaatagattatggaaatctgtagttaggtaaaccacatctat-cctaaagaaatcaa 19826660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 16309687 - 16309743
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||| ||||||||| ||   |||||||||| |||||||||||||||    
T  16309687 tcgacatcccaactaagttggcaccccggagaacctccatcctatgccgccaaactc 16309743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 18490681 - 18490737
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||| ||||||||| ||   |||||||||| |||||||||||||||    
T  18490681 tcgacatcccaactaagttggcaccccggagaacctccatcctatgccgccaaactc 18490737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 33537356 - 33537305
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaa 69  Q
    |||||| |||||||||||||||||||||| |||| | ||| |||||||||||    
T  33537356 cgacattccaactaggttggcacctcgaggaaccccaatcctatgccgccaa 33537305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 11072551 - 11072433
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactct-aaaattttattnnnnnnngggaaaaa 100  Q
    ||||||||  || |||||||| || ||||||||||||| | ||||| ||||||||| |||| |||||  |||| |||| ||||||       ||||||||    
T  11072551 catcaagaggcatcatcgacagcctaactaggttggcatcccgagagacctccatcctatgtcgccacgctctaaaaaatttattaaaaaaggggaaaaa 11072452  T
Q  101 taattac-aaaggaggggg 118  Q
    ||||||| |||||||||||    
T  11072451 taattacaaaaggaggggg 11072433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 20970215 - 20970333
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactct-aaaattttattnnnnnnngggaaaaa 100  Q
    ||||||||  || ||||||||| |||||||||||||| ||  |||| ||||||||| |||| |||||  |||| ||||||||| |       ||||||||    
T  20970215 catcaagaggcatcatcgacattccaactaggttggcgccctgagagacctccatcctatgtcgccacgctctaaaaattttaataaaaaaggggaaaaa 20970314  T
Q  101 taattac-aaaggaggggg 118  Q
    ||||||| |||||||||||    
T  20970315 taattacaaaaggaggggg 20970333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 40790718 - 40790654
Alignment:
Q  20 acatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||||||||||||||| | || |||||||| ||| ||||||| |||| ||||||||||||||    
T  40790718 acataccaactaggttggcatc-cgggaaacctcaatcctatgccgtcaaattctaaaattttatt 40790654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 2928760 - 2928820
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaa 244  Q
    ||||| || |||| |||||| |||| |  |||||||||||||||| |||||||||||||||    
T  2928760 acaccctacaacatattatgaaaatctaaagttgggtaaaccacaactatccctaaagaaa 2928820  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 36802282 - 36802348
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  36802282 caacatcgacatctcaactaggttggcaccccgagaaacctccatcctatgccgccaaactctaaaa 36802348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 40926479 - 40926547
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattt 81  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||    
T  40926479 aacatcgacatcccaactaggttggcaccccgggaaacctccatcctatgccgccaaactataaaattt 40926547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 17678296 - 17678372
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || |||||||||||||| |||||||||||||||||| ||||||||| |||||||||| |||||||||    
T  17678296 catcaagaggcatcatcgacatcccaattaggttggcacctcgagagacctccatcctatgccgccacactctaaaa 17678372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 20477496 - 20477420
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || ||||||||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  20477496 catcaagaggcatcatcgacatcccaactaggttggcaccccgagatacctccatcctatgccgtcaaactctaaaa 20477420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 38376884 - 38376955
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc-taaaattttatt 85  Q
    ||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||| ||||||||||||    
T  38376884 catcgacatcctaactaggttggcacctcgagaggcctccatcctatgccgccaaactcataaaattttatt 38376955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 34454961 - 34454887
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaa 76  Q
    |||||||| ||| |||||||||||||| |||||||||||| ||||| | ||||||| ||||||||||||||||||    
T  34454961 catcaagagacatcatcgacatcccaattaggttggcaccccgagacatctccatcctatgccgccaaactctaa 34454887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 17377513 - 17377596
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  ||||| ||| ||| |||||||||||||||| | ||||||||||||| |||| |||||||||||||||| |||||    
T  17377513 catcaagaggcaacaacgatatctcaactaggttggcaccccaagaaacctccatcctatgacgccaaactctaaaatattatt 17377596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 24270841 - 24270907
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||  || |||||||||||| ||||| | |||||||||||||||||||    
T  24270841 gacatcccaactaggttggcactgcgggaaacctccatcctatgctgtcaaactctaaaattttatt 24270907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 38242155 - 38242225
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||||| |||| |||| |||||||||| |||| |||| ||||||    
T  38242155 catcgacatcccaactaggttggcaccccgagacaccttcatcctatgccgccacactcgaaaaatttatt 38242225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 12102880 - 12102796
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  |||||||||||||||||||| ||||| | | ||||||| || |||| ||||||||||||||||||| ||||||||    
T  12102880 catcaagaggcaacatcgacatcccaactatgttggtatcccgagaaatcttcatcctatgccgccaaactctaaagattttatt 12102796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 28698083 - 28698015
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactca 259  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||| |||||||||||  |||||||||    
T  28698083 aaaacatattaaggaaatttgtagttaggtaaaccacatctatcccgaaagaaatcaaccttcaactca 28698015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 17679734 - 17679797
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||| ||||    
T  17679734 catcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaa 17679797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 17151349 - 17151291
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa 77  Q
    ||||| ||||||||||||||||  || |||||||||||| |||||||||||||||||||    
T  17151349 gacatgccaactaggttggcactccgggaaacctccatcctatgccgccaaactctaaa 17151291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 24297395 - 24297329
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||  || |||||||||||| ||||| | |||||| ||||||||||||    
T  24297395 gacatcccaactaggttggcactgcgggaaacctccatcctatgctgtcaaactttaaaattttatt 24297329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 28462178 - 28462125
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgcca 68  Q
    ||||||||||||||||||||||||||| ||||| |||||| || ||||||||||    
T  28462178 catcgacatcccaactaggttggcaccccgagatacctccgtcgtatgccgcca 28462125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 6083795 - 6083735
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||| ||||||||| |||||||||||| ||||  ||||||||||||||||||| |||||||    
T  6083795 aacaccgacatcccgactaggttggcatctcggaaaacctccatcatatgccgtcaaactc 6083735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 22169973 - 22170045
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactct 74  Q
    ||||||||  || |||| ||||||||| |||||||||| | ||||| ||||||||| ||||||||||||||||    
T  22169973 catcaagaggcatcatcaacatcccaattaggttggcatcccgagagacctccatcctatgccgccaaactct 22170045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 24524098 - 24524154
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  24524098 tcgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 24524154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 26916684 - 26916628
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  26916684 tcgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 26916628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 28948942 - 28948858
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc-gccaaactctaaaattttatt 85  Q
    ||||| || |||||| |||||||||||||| ||||||||| || ||||||||| || | |||| |||||||||||||| ||||||    
T  28948942 catcaggagacaacaccgacatcccaactatgttggcaccccgggaaacctccgtcctctgcctgccaaactctaaaaatttatt 28948858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 29216674 - 29216590
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  || |||||||||||||| || |||||||||| |||| ||||||||| ||| ||||||||||| ||| ||||||||    
T  29216674 catcaagaggcatcatcgacatcccaattaagttggcacctagagagacctccatcctataccgccaaactcaaaagattttatt 29216590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 29329973 - 29329889
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  || |||||||||||||| || |||||||||| |||| ||||||||| ||| ||||||||||| ||| ||||||||    
T  29329973 catcaagaggcatcatcgacatcccaattaagttggcacctagagagacctccatcctataccgccaaactcaaaagattttatt 29329889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 30419037 - 30418965
Alignment:
Q  14 acatcgacatcccaactaggttggcacctcgagaaacctccatcatat-gccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||||||||| || ||| ||||| || ||| |||| | |||||||||||||||||    
T  30419037 acatcgacatcccaactaggttggcaccacgggaatcctccgtcctatggccgtctaactctaaaattttatt 30418965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 32234449 - 32234517
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgcc-gccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||| ||||| || |||||| | | |||||||||||||||||    
T  32234449 cgacatcccaactaggttggcacctcgggaagcctccgtcctatgcctgtctaactctaaaattttatt 32234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 17377743 - 17377794
Alignment:
Q  193 aacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaa 244  Q
    ||||||||||| |||| || |||||||||||||||| |||||||||||||||    
T  17377743 aacagattatggaaatctgaagttgggtaaaccacaactatccctaaagaaa 17377794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 20426395 - 20426349
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatat 61  Q
    ||||||||||| | ||||||||||||||||||| |||||||||||||    
T  20426395 catcgacatccgagctaggttggcacctcgagatacctccatcatat 20426349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 20632522 - 20632480
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  20632522 catcgacatcccaactaggttggcaccccgagacacctccatc 20632480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 42270375 - 42270445
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||| |||||||| |||| | | ||||| ||||||||| ||||||||||||||| |||| ||||||    
T  42270375 catcgacattccaactagattggtatcccgagatacctccatcctatgccgccaaactcgaaaaatttatt 42270445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 20434200 - 20434275
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc---taaaattttatt 85  Q
    |||| ||||||| |||||||||||||||| ||  ||||| ||||| |||||||||||||||   ||||||||||||    
T  20434200 aacaacgacatcacaactaggttggcaccccgcaaaacccccatcctatgccgccaaactcagataaaattttatt 20434275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 28698253 - 28698188
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||| |||| |||||||||| | |||||||| || ||| || |||||||||||||||||    
T  28698253 aacatcgacattccaattaggttggcatcccgagaaacatctatcctaagccgccaaactctaaaa 28698188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 9892142 - 9892226
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    |||||||| ||| |||||||||||||| |||||||||||||| |||  ||| |||| ||| || |||||||| ||| ||||||||    
T  9892142 catcaagagacatcatcgacatcccaattaggttggcacctccagaggccttcatcctataccaccaaactcaaaagattttatt 9892226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 20386696 - 20386640
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||||||||||||||||||||||||  |||| |||||| || |||||||||| ||||    
T  20386696 tcgacatcccaactaggttggcaccctgagatacctccgtcgtatgccgccacactc 20386640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 25971019 - 25971059
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  25971019 tcgacatcccaactaggttggcaccccgagatacctccatc 25971059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 12102688 - 12102633
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatc 246  Q
    |||||| | |||| |||| ||||||||||||| ||||||||||||| |||||||||    
T  12102688 aaaacaaactatggaaatctgtagttgggtaatccacatctatcccgaaagaaatc 12102633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 18505718 - 18505760
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||||  ||||| |||||||||    
T  18505718 catcgacatcccaactaggttggcacgacgagatacctccatc 18505760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 21565912 - 21565846
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||| ||||||||||||||| | ||  |||||||| || ||||||| ||||||||| |||||||||    
T  21565912 gacattccaactaggttggcatcccggaaaacctccgtcctatgccgtcaaactctacaattttatt 21565846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 28522912 - 28522842
Alignment:
Q  13 aacatcgacatcccaactaggttggca-cctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||||||| |||||||||||  ||| ||||||||||    
T  28522912 aacattgacatcccaactaggttggcaccctagag-aacctccatcctatgccgccaa--tctcaaattttatt 28522842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 18417412 - 18417356
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||| ||||||||| ||||| | | ||||| | |||||||||||||    
T  18417412 tcgacatcccaactatgttggcaccccgagacatcgccatcctttgccgccaaactc 18417356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 22266350 - 22266410
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||||| ||||||||  ||||  |||||| |||| |||||||| ||||    
T  22266350 cgacatcccaactaggttgacacctcgaagaacccacatcatttgcctccaaactcaaaaa 22266410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 103777 - 103701
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  |||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||||||||||||    
T  103777 catcaagaggcaacatcgacatcccaactaggttggcaccccgagaaatctccatcctatgccgtcaaactctaaaa 103701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 55796 - 55863
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaatttt 82  Q
    ||||||||||||||||||||||||||| ||| | ||||||||| |||||| ||| |||| ||||||||    
T  55796 catcgacatcccaactaggttggcaccccgacacacctccatcctatgccaccacactcgaaaatttt 55863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 52769 - 52697
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||| ||||||||||||||||||||| | ||||||||| || ||| || ||||||| ||||||||||||    
T  52769 aacaccgaaatcccaactaggttggcaccttgggaaacctccgtcctataccaccaaactttaaaattttatt 52697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 6129712 - 6129786
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    |||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||||    
T  6129712 caacatcgacatcccaaccaggttggcaccccgagaagcctccatcatatggcgccaaactctaaagattttatt 6129786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 19068711 - 19068784
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||||||||| |||||||||||||||  |||||||||||||| ||||||||||||||||| || ||||||    
T  19068711 caacatcgacatccaaactaggttggcaccctgagaaacctccatcctatgccgccaaactctagaaatttatt 19068784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 29998578 - 29998662
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    |||||||| ||| ||||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||| ||| ||||||||    
T  29998578 catcaagagacatcatcgacatcccaactaggttggcatctcaagagacctccatcgtatgccgccaaactcaaaagattttatt 29998662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 21711556 - 21711628
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||||| || ||| |||||||| ||||||||||| |||||||| ||||||    
T  21711556 aacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttatt 21711628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 5781097 - 5781160
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    |||||||||||||||||||||||||||| | |||||||| |||||| |||||| ||||||||||    
T  5781097 caacatcgacatcccaactaggttggcatcccgagaaacttccatcctatgccaccaaactcta 5781160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 35341959 - 35341877
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  || |||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||| |||| ||||||    
T  35341959 catcaagagtcatcatcgacatcccaactag-ttggcaccccgagatacctccatcctatgccgccaaactcgaaaaatttatt 35341877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 19068879 - 19068952
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcat 260  Q
    |||| |||||| |||||| |||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||    
T  19068879 accaaaaaacaaattatggaaatctgtagttaggtaaaccacatctat-cctaaagaaatcaacattcaactcat 19068952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 34995469 - 34995539
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||||| | ||||||| |||||| |||||||| |||| ||||||    
T  34995469 catcgacatcccaactaggttggcaccccgagataactccatcctatgccaccaaactcgaaaaatttatt 34995539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 28682764 - 28682882
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactct-aaaattttattnnnnnnngggaaaaa 100  Q
    ||||||||  || ||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||  |||| |||||||||||       ||||||||    
T  28682764 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgccgccacgctctaaaaattttattaaaaaaggggaaaaa 28682863  T
Q  101 taattac-aaaggaggggg 118  Q
    ||| ||| |||||||||||    
T  28682864 taaatacaaaaggaggggg 28682882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 39324353 - 39324424
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||  || ||||||||||||||||||||||||||  ||||| ||||||||| ||| |||||||||||    
T  39324353 catcaagaggcatcatcgacatcccaactaggttggcactccgagagacctccatcctataccgccaaactc 39324424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 11725706 - 11725648
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||||||||||||| |||||||||||  ||||| ||||||||| |||||||||||||||    
T  11725706 catcgacatcccaattaggttggcactccgagagacctccatcctatgccgccaaactc 11725648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 2259415 - 2259485
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||| | || |||||||||||| ||||| |||||||||  ||||||||||    
T  2259415 aacaccgacatcccaactaggttggcatcccgggaaacctccatcctatgcagccaaactc--aaattttatt 2259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 10720938 - 10720869
Alignment:
Q  16 atcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||||| |||||||||||  | ||||||||||||| || ||||| || ||||||||||||||||||    
T  10720938 atcgacatcctaactaggttggtgcttcgagaaacctccgtcctatgctgctaaactctaaaattttatt 10720869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 21877921 - 21877970
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc 64  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  21877921 catcgacatcccaactaggttggcaccccgagacacctccatcctatgcc 21877970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 33764508 - 33764561
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgcca 68  Q
    ||||||||||||||||||||||||||| ||||| |||||| || ||||||||||    
T  33764508 catcgacatcccaactaggttggcaccccgagatacctccgtcgtatgccgcca 33764561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 15614797 - 15614725
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||||| || ||| |||||||| |||||||| || | |||||| ||||||    
T  15614797 aacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgcaaatcgctaaaactttatt 15614725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 13642828 - 13642898
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||| |||||||| |||| ||| ||||| ||||||||| ||||||||||| ||| |||| ||||||    
T  13642828 catcgacattccaactagattggtaccccgagatacctccatcctatgccgccaatctcgaaaaatttatt 13642898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 5781286 - 5781342
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaa 248  Q
    |||||| |||||| |||| ||||||| |||||||||||||||| ||||||||||||||    
T  5781286 aaaacatattatggaaatatgtagttaggtaaaccacatctat-cctaaagaaatcaa 5781342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 21027039 - 21027109
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc---taaaattttatt 85  Q
    |||||||||||||||||||||||| ||   |||| ||||| |||||||||||||||   ||||||||||||    
T  21027039 cgacatcccaactaggttggcaccccgcagaacccccatcctatgccgccaaactcagataaaattttatt 21027109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 24765524 - 24765589
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||| |||||| | || ||||||||| |||||||| |||||||||  ||||||||||    
T  24765524 cgacatcccaactagattggcatcccgggaaacctccctcatatgcagccaaactc--aaattttatt 24765589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 28637673 - 28637626
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccg 65  Q
    |||||||||||||||||||||||| |||| |||| ||||| |||||||    
T  28637673 cgacatcccaactaggttggcaccccgaggaacccccatcctatgccg 28637626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 32038451 - 32038510
Alignment:
Q  26 caactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||| ||||| |||| | |||||||||||| |||||||||||||||||| | ||||||    
T  32038451 caactaagttggtaccttgggaaacctccatcctatgccgccaaactctaataatttatt 32038510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 12851807 - 12851873
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgcca 68  Q
    ||||||||  || |||| ||||||||||||||||||||| |||||| ||||| ||| ||| ||||||    
T  12851807 catcaagaggcatcatcaacatcccaactaggttggcacgtcgagatacctctatcgtataccgcca 12851873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 17065284 - 17065350
Alignment:
Q  20 acatcccaactaggttggcacctcgagaaacctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||||| |||| ||||| || |||| ||  | |||||||||||||||||    
T  17065284 acatcccaactaggttggcacctccagaagcctccgtcctatgtccatctaactctaaaattttatt 17065350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 4120579 - 4120507
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| ||||||||||||||||||||||||  | ||| ||| |||  |||||| |||| |||||||||| ||||    
T  4120579 aacaccgacatcccaactaggttggcaccctgggaacccttcattctatgccaccaatctctaaaattgtatt 4120507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 129492 - 129375
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt-nnnnnnngggaaaaa 100  Q
    ||||||||  || ||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||| |||||||||||        ||||||||    
T  129492 catcaagagtcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaattttattaaaaaaaggggaaaaa 129393  T
Q  101 taattacaaaggaggggg 118  Q
    |||||||||| |||||||    
T  129392 taattacaaaagaggggg 129375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 307309 - 307192
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt-nnnnnnngggaaaaa 100  Q
    ||||||||  || ||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||| |||||||||||        ||||||||    
T  307309 catcaagagtcatcatcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaattttattaaaaaaaggggaaaaa 307210  T
Q  101 taattacaaaggaggggg 118  Q
    |||||||||| |||||||    
T  307209 taattacaaaagaggggg 307192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 81
Target Start/End: Original strand, 1537976 - 1538044
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattt 81  Q
    |||| ||||||||||||||||||| ||||| | |||||||||||| |||||||||||||||||||||||    
T  1537976 aacaccgacatcccaactaggttgccacctagggaaacctccatcctatgccgccaaactctaaaattt 1538044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 247
Target Start/End: Original strand, 24573856 - 24573919
Alignment:
Q  184 acaccataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatca 247  Q
    |||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  24573856 acaccaaaaaacaaattatggaaatctgtagttgggtaaaccacatctatccctaaagaaatca 24573919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 11295387 - 11295461
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta-aaattttatt 85  Q
    |||||||||||||| ||||||||||||||  ||||||||||| ||| ||||||||||||||||| ||||||||||    
T  11295387 caacatcgacatccaaactaggttggcactccgagaaacctctatcctatgccgccaaactctataaattttatt 11295461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 11295557 - 11295619
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaa 248  Q
    |||| ||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  11295557 accaaaaaacagattatggaaatctgtagttaggtaaaccacatctatccctaaagaaatcaa 11295619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 14073860 - 14073741
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta-aaattttatt-nnnnnnngggaaaa 99  Q
    ||||||||  |||||||||| | |||||||||||||||||  |||||||||||||| |||||||||||||| || | ||||||||        |||||||    
T  14073860 catcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatgccgccaaactatagagattttattaaaaaaaagggaaaa 14073761  T
Q  100 ataattacaaaggaggggga 119  Q
    ||||||||||||||||||||    
T  14073760 ataattacaaaggaggggga 14073741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 14383888 - 14383769
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta-aaattttatt-nnnnnnngggaaaa 99  Q
    ||||||||  |||||||||| | |||||||||||||||||  |||||||||||||| |||||||||||||| || | ||||||||        |||||||    
T  14383888 catcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatgccgccaaactatagagattttattaaaaaaaagggaaaa 14383789  T
Q  100 ataattacaaaggaggggga 119  Q
    ||||||||||||||||||||    
T  14383788 ataattacaaaggaggggga 14383769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 22849544 - 22849614
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||| |||| ||||||    
T  22849544 catcgacatcccaactaggttggcaccccgagatacctctatcctatgccgccaaactcaaaaaatttatt 22849614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 1633352 - 1633292
Alignment:
Q  25 ccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||||||    
T  1633352 ccaactaggttgacaccccgagaaacctcaatcctatgccgccaaactctaaaattttatt 1633292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 69
Target Start/End: Complemental strand, 12163466 - 12163399
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaa 69  Q
    ||||||||  ||||| ||||||||||||||||||||||||||| |||||||||||| | |||||||||    
T  12163466 catcaagaggcaacaccgacatcccaactaggttggcacctcgggaaacctccatcgtctgccgccaa 12163399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 28780252 - 28780179
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    ||||||||  |||||||||||||||||||||||||||| | | ||||| || |||| |||||||||||||||||    
T  28780252 catcaagaggcaacatcgacatcccaactaggttggcatcccaagaaatcttcatcctatgccgccaaactcta 28780179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 3399568 - 3399631
Alignment:
Q  12 caacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    |||||||||| | ||||||||||||||||| |||||||||| |||| ||||||| |||||||||    
T  3399568 caacatcgacttaccaactaggttggcaccccgagaaaccttcatcctatgccgtcaaactcta 3399631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 4463454 - 4463521
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||| |  ||| |||||||| |||| |||||||||||||||||||||||    
T  4463454 gacatcccaactaggttggcaccccaggaagcctccatcctatgcccgccaaactctaaaattttatt 4463521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 24573678 - 24573753
Alignment:
Q  3 atcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    |||||||  |||||||||||||||||||||||||| | | ||||||| || |||  ||||||||||||||||||||    
T  24573678 atcaagaggcaacatcgacatcccaactaggttggtagcccgagaaatcttcattctatgccgccaaactctaaaa 24573753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 282
Target Start/End: Original strand, 9411420 - 9411503
Alignment:
Q  193 aacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaaaattcaactcattagggagagaagacagccaaac 282  Q
    ||||||||||| |||| || |||||||||||||||| ||||||||||||||| ||      | |||||||||||||||||||| ||||||    
T  9411420 aacagattatggaaatctgaagttgggtaaaccacaactatccctaaagaaaaca------acctcattagggagagaagacaaccaaac 9411503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 1862349 - 1862405
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||   |||||||||| |||||||||||||||    
T  1862349 tcgacatcccaactaggttggcaccccggagaacctccatcctatgccgccaaactc 1862405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 12727872 - 12727796
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || ||||||||||||||||||||||||| | ||||| ||| ||||| ||||||||||  ||||||||    
T  12727872 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacccccatcctatgccgccacgctctaaaa 12727796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 32022022 - 32021954
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||| ||| |||||||| | |||||| |||| ||| |||||||||||||||||||    
T  32022022 cgacatcccaactaggttagcatctcgagaagcatccatcctatgcccgtcaaactctaaaattttatt 32021954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 18270316 - 18270379
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||| ||||| | || |||||||||    
T  18270316 catcgacatcccaactaagttggcaccccgagagacctccatcctatgctgtcagactctaaaa 18270379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 9411261 - 9411303
Alignment:
Q  43 cgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||| ||||||||||||||||||||| |||||    
T  9411261 cgagaaacctccatcctatgccgccaaactctaaaatattatt 9411303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 17157577 - 17157647
Alignment:
Q  16 atcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||||||| |||||||  | | |||||| |||||||| ||||||||||||||||||| ||||||||    
T  17157577 atcgacatcccaattaggttgatatcccgagaagcctccatcctatgccgccaaactctaaagattttatt 17157647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 28780071 - 28780013
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaa 244  Q
    |||| ||||||||||| | |||||||||||| ||||||||||||||||||  |||||||    
T  28780071 accaaaaaacagattaaggaaatttgtagttaggtaaaccacatctatcctgaaagaaa 28780013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 1748315 - 1748376
Alignment:
Q  3 atcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc 64  Q
    |||||||| || |||||||||||||||||||||||||    |||| ||||||||||||||||    
T  1748315 atcaagaagcatcatcgacatcccaactaggttggcagtctgagatacctccatcatatgcc 1748376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 248
Target Start/End: Original strand, 17157934 - 17157991
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatcaa 248  Q
    |||||| | |||| |||||||||||||||||| |||| |||||||| |||||||||||    
T  17157934 aaaacaaactatggaaatttgtagttgggtaatccacctctatcccaaaagaaatcaa 17157991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 3410250 - 3410194
Alignment:
Q  191 aaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaatca 247  Q
    ||||||||||||| |||| | ||||| |||||||| ||||| |||||||||||||||    
T  3410250 aaaacagattatggaaatctatagttaggtaaaccgcatctgtccctaaagaaatca 3410194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 20936834 - 20936874
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||| ||||| |||||||||    
T  20936834 tcgacatcccaactaggttggcaccccgagatacctccatc 20936874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28937403 - 28937335
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||| | ||  || |||||||| |||| ||| |||||||||||||||||||    
T  28937403 cgacatcccaactaggttggcatcccggaaagcctccatcctatgcccgtcaaactctaaaattttatt 28937335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 980974 - 980919
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    |||||||||||||||||||||||  ||   |||||||||| |||||||||||||||    
T  980974 cgacatcccaactaggttggcactccggagaacctccatcctatgccgccaaactc 980919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 9062065 - 9062136
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaa-aattttatt 85  Q
    ||||||||||| ||||||||||| ||| |||||||||| |||||| | ||| ||| |||||| |||||||||    
T  9062065 catcgacatcctaactaggttggtaccccgagaaacctacatcatgtaccgtcaatctctaagaattttatt 9062136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 14073682 - 14073623
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaat 245  Q
    |||| ||||||||||| | |||| ||| ||| ||||||||||||||||||| ||||||||    
T  14073682 accaaaaaacagattaaggaaatctgttgttaggtaaaccacatctatcccgaaagaaat 14073623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 14383710 - 14383651
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaat 245  Q
    |||| ||||||||||| | |||| ||| ||| ||||||||||||||||||| ||||||||    
T  14383710 accaaaaaacagattaaggaaatctgttgttaggtaaaccacatctatcccgaaagaaat 14383651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 37375064 - 37375017
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccg 65  Q
    |||||||||||||||||||||||| |||| |||| ||||| |||||||    
T  37375064 cgacatcccaactaggttggcaccccgaggaacccccatcctatgccg 37375017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 4407432 - 4407500
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaa-cctccatcatatg-ccgccaaactctaaaattttatt 85  Q
    |||||||||||||||||||||||| | ||||| ||||| || |||| ||| |||||||||||||||||||    
T  4407432 cgacatcccaactaggttggcacc-ccagaaagcctccgtcctatgcccgtcaaactctaaaattttatt 4407500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 9114566 - 9114529
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctcc 54  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  9114566 tcgacatcccaactaggttggcaccccgagatacctcc 9114529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 11842826 - 11842750
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc-gccaaactctaaa 77  Q
    ||||| ||| ||||| |||||||||||||||||||| ||| || ||| |||||| | |||||| ||||| |||||||    
T  11842826 catcaggaagcaacaccgacatcccaactaggttggtaccccgggaagcctccaccctatgcctgccaatctctaaa 11842750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 15468278 - 15468346
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgc-cgccaaactctaaaattttatt 85  Q
    ||||||||||||||||||||||||||| ||  ||||  || ||||| || | |||||||||||||||||    
T  15468278 cgacatcccaactaggttggcacctcgggaggcctctgtcctatgctcgtctaactctaaaattttatt 15468346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 1501 - 1584
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||  ||||| |||||||||||||||||||||||| || |||||||||||| |||||  |||||||||||||| |||||    
T  1501 catcaagaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatcctatgcttccaaactctaaaatattatt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 118
Target Start/End: Original strand, 2249 - 2343
Alignment:
Q  25 ccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt-nnnnnnngggaaaaataattacaaaggaggggg 118  Q
    |||||||| |||||||| || |||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||| |||||||    
T  2249 ccaactagattggcaccccgggaaacctccatcctatgccgccaaactctaaaattttattaaaaaaaggggaaaaataattacaaaagaggggg 2343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 314 - 387
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta 75  Q
    ||||||||  |||||||||| | |||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  314 catcaagaggcaacatcgacttaccaactagtttggcaccccgagaaacctccatcctatgccgccaaactcta 387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 6260 - 6368
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactcta-aaattttatt--nnnnnnngggaaaaataattacaa 109  Q
    ||||||||| | |||||||| |||||||| ||||||| |||||||||||| | |||||||||| | ||||||||         |||||||||||||||||    
T  6260 aacatcgacttaccaactagtttggcaccccgagaaaactccatcatatgacaccaaactctagagattttattaaaaaaagggggaaaaataattacaa 6359  T
Q  110 aggaggggg 118  Q
    |||||||||    
T  6360 aggaggggg 6368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 11474 - 11402
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||||| || ||| |||||||| ||||||||||| |||||||| ||||||    
T  11474 aacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttatt 11402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 14337 - 14421
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||  || ||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||| ||| ||||||||    
T  14337 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgccgccaaactcaaaagattttatt 14421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 2354 - 2282
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||||||||||||||||||||| || ||| |||||||| ||||||||||| |||||||| ||||||    
T  2354 aacaccgacatcccaactaggttggcaccccgggaaccctccatcctatgccgccaatctctaaaactttatt 2282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1667 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1667
Description:

Target: scaffold1667; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 726 - 792
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||| |||||||||||    
T  726 cgacatcccgactaggttggcacctcgaagaacctccatcctatgccgccaaactc-aaaattttatt 792  T

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Target: scaffold0238 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 4493 - 4434
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||  ||||||||    
T  4493 gacatcccaactaggttggcacctcgagagacctccatcctatgccgccacgctctaaaa 4434  T

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Target: scaffold0044 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 20913 - 20847
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||| ||||||||||||||||||  |||||||||| ||||||||||||||| |||||||||||    
T  20913 cgacatcccgactaggttggcacctcgaagaacctccatcctatgccgccaaactc-aaaattttatt 20847  T

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Target: scaffold0007 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 173939 - 173857
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttat 84  Q
    ||||| || ||| ||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||| |||| |||||    
T  173939 catcaggagacatcatcgacatcccaactaggttggcaccccgagatacctccatcttatgctgccaatctcaaaaagtttat 173857  T

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Target: scaffold0291 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 21881 - 21957
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||  || ||||||||||||||||||||||||| | ||||| ||||||||| ||||||||||  ||||||||    
T  21881 catcaagaggcatcatcgacatcccaactaggttggcatcccgagagacctccatcctatgccgccacgctctaaaa 21957  T

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Target: scaffold0291; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 15568 - 15640
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||| ||||| |||||||||||    |||| |||| || |||||||||||||||||||||||||||    
T  15568 aacaccgacattccaaccaggttggcaccctaggaaatctccgtcctatgccgccaaactctaaaattttatt 15640  T

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Target: scaffold0061 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 39790 - 39734
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||    
T  39790 tcgacatcccaactaggttggcacctcgagatacctccgtcgtatgccgccacactc 39734  T

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Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 158989 - 159045
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||    
T  158989 tcgacatcccaactaggttggcacctcgagatacctccgtcgtatgccgccacactc 159045  T

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Target: scaffold0265 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 19588 - 19651
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| |||| ||||    
T  19588 catcgacatcccaactaggttggcaccccgagacacctccatcctatgccaccacactcgaaaa 19651  T

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Target: scaffold0063 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 63640 - 63569
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaa-attttatt 85  Q
    ||||||||| | ||||||||||||||||||||| |||| |||| ||||||||||||||| ||| ||||||||    
T  63640 catcgacattctaactaggttggcacctcgagagacctacatcctatgccgccaaactcaaaagattttatt 63569  T

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Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 123852 - 123907
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||||| |||||||||    
T  123852 catcaagagacatcatcgacatcccaactaggttggcaccccgagatacctccatc 123907  T

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Target: scaffold0363 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 5316 - 5358
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  5316 catcgacatcccaactaggttggcacctcgagacacctccatc 5358  T

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Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 101031 - 100967
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaatttta 83  Q
    |||||| ||||| ||||||||||| || ||||||||| || |||||||||||||||||||||||||    
T  101031 cgacattccaaccaggttggcacc-cgggaaacctccgtcctatgccgccaaactctaaaatttta 100967  T

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Target: scaffold0546 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0546
Description:

Target: scaffold0546; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 5893 - 5949
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| |||||| || |||||||||| ||||    
T  5893 tcgacatcccaactaggttggcaccccgagatacctccgtcgtatgccgccacactc 5949  T

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Target: scaffold0195 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 9005 - 9076
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||| ||||||||||||||| | || ||||||||| || ||||||| |||||||||||||||||||    
T  9005 aacaccgacataccaactaggttggcatc-cgggaaacctccgtcctatgccgtcaaactctaaaattttatt 9076  T

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Target: scaffold0195; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 14394 - 14465
Alignment:
Q  13 aacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    |||| |||||| ||||||||||||||| | || ||||||||| || ||||||| |||||||||||||||||||    
T  14394 aacaccgacataccaactaggttggcatc-cgggaaacctccgtcctatgccgtcaaactctaaaattttatt 14465  T

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Target: scaffold0134 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 2537 - 2481
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||    
T  2537 tcgacatcccaactaggttggcaccccgagacatctccatcctatgccgccagactc 2481  T

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Target: scaffold0109 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0109
Description:

Target: scaffold0109; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 7414 - 7358
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| |||||| || |||||||||| ||||    
T  7414 tcgacatcccaactaggttggcaccccgagatacctccgtcgtatgccgccacactc 7358  T

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Target: scaffold0216 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 15109 - 15168
Alignment:
Q  19 gacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||||||| ||| ||| |||| |||| ||||||||||||||| ||||    
T  15109 gacatcccaactaggttggcatctcaagagaccttcatcttatgccgccaaactcgaaaa 15168  T

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Target: scaffold0125 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 35517 - 35572
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    |||||||| ||  ||||||||||||||||||||||||||| ||||| |||||||||    
T  35517 catcaagagacgtcatcgacatcccaactaggttggcaccccgagatacctccatc 35572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 16082 - 16019
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaa 78  Q
    ||||||||||||||||||||||||||  ||||| ||||||||  |||||||||| |||| ||||    
T  16082 catcgacatcccaactaggttggcactccgagacacctccatgctatgccgccacactcgaaaa 16019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 118
Target Start/End: Original strand, 7506 - 7624
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc--taaaattttattnnnnnnngggaaaa 99  Q
    |||||||| ||  |||| |||||||||||||||||||||| ||||| ||||||||| ||| | |  | ||||   |||||||||||       |||||||    
T  7506 catcaagagacgtcatctacatcccaactaggttggcaccccgagatacctccatcctatactggtacactcaagaaaattttattaaaaaaagggaaaa 7605  T
Q  100 ataattacaaaggaggggg 118  Q
    |||||||||||||||||||    
T  7606 ataattacaaaggaggggg 7624  T

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Target: scaffold0292 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 21291 - 21225
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgcca 68  Q
    ||||||||  || ||||||||||||||||||||||||||| ||||| ||||| ||| ||| ||||||    
T  21291 catcaagaggcatcatcgacatcccaactaggttggcaccccgagagacctctatcgtataccgcca 21225  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 20692 - 20734
Alignment:
Q  15 catcgacatcccaactaggttggcacctcgagaaacctccatc 57  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  20692 catcgacatcccaactaggttggcaccccgagacacctccatc 20734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1821 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1821
Description:

Target: scaffold1821; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 1036 - 980
Alignment:
Q  17 tcgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactc 73  Q
    ||||||||||||||||||||||||| ||||| | | ||||| | |||||||||||||    
T  1036 tcgacatcccaactaggttggcaccccgagacatcgccatcctttgccgccaaactc 980  T

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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 8021 - 8086
Alignment:
Q  18 cgacatcccaactaggttggcacctcgagaaacctccatcatatgccgccaaactctaaaattttatt 85  Q
    ||||||||||||||| |||||| | || ||||||||| |||||||| |||||||||  ||||||||||    
T  8021 cgacatcccaactagattggcatcccgggaaacctccctcatatgcagccaaactc--aaattttatt 8086  T

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Target: scaffold0356 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 13796 - 13734
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacctccatcatatgcc 64  Q
    ||||| ||||||||  |||||||||||||||||||||||| || ||||| ||| || ||||||    
T  13796 catcaggaaacaacgccgacatcccaactaggttggcaccccgggaaacttccgtcctatgcc 13734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 835 - 785
Alignment:
Q  2 catcaagaaacaacatcgacatcccaactaggttggcacctcgagaaacct 52  Q
    ||||||||  ||||| |||||||||||||||||||||||| ||| ||||||    
T  835 catcaagaggcaacaccgacatcccaactaggttggcaccccgaaaaacct 785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 80388 - 80342
Alignment:
Q  20 acatcccaactaggttggcacctcgagaaacctccatcatatgccgc 66  Q
    |||||||||||||||||||||| || |||| ||||||| ||||||||    
T  80388 acatcccaactaggttggcaccccgcgaaatctccatcctatgccgc 80342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 2291 - 2349
Alignment:
Q  186 accataaaacagattatgtaaatttgtagttgggtaaaccacatctatccctaaagaaa 244  Q
    |||| ||||||||||| | |||| |||||||  |||||||||||||||||| |||||||    
T  2291 accaaaaaacagattaaggaaatctgtagttaagtaaaccacatctatcccgaaagaaa 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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