View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7690_low_1 (Length: 1068)

Name: NF7690_low_1
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7690_low_1
NF7690_low_1
[»] chr5 (15 HSPs)
chr5 (17-852)||(39675407-39676260)
chr5 (17-211)||(10873609-10873803)
chr5 (17-211)||(10878680-10878874)
chr5 (17-211)||(10883751-10883945)
chr5 (278-486)||(10866218-10866426)
chr5 (278-486)||(10873879-10874087)
chr5 (278-486)||(10878950-10879158)
chr5 (278-486)||(10884021-10884229)
chr5 (17-211)||(10866502-10866696)
chr5 (272-497)||(10887942-10888167)
chr5 (17-211)||(10887669-10887863)
chr5 (295-495)||(10045775-10045975)
chr5 (17-195)||(10046138-10046316)
chr5 (875-966)||(39675263-39675353)
chr5 (800-853)||(10865768-10865823)


Alignment Details
Target: chr5 (Bit Score: 770; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 17 - 852
Target Start/End: Complemental strand, 39676260 - 39675407
Alignment:
Q  17 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39676260 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 39676161  T
Q  117 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttggacaag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39676160 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatggacaaaactttttggacaag 39676061  T
Q  217 gatttcctccggtagatttggcatgactttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccg 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39676060 gatttcctccggtagatttggcatgactttggtggttttcgcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgcca 39675961  T
Q  317 aagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatctttt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675960 aagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatctttt 39675861  T
Q  417 cacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675860 cacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaagaagtttgtgacagtgaattctg 39675761  T
Q  517 ctgcttttggttcttctttgttttgctggagggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaa 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675760 ctgcttttggttcttctttgttttgctggagggatcagaatatatttggcgttgaacttccatttctctcttgttaagtgaaggatttgaaatccagaaa 39675661  T
Q  617 atgaaaagaaagaaaggagttcagggagattgattggtaatttgtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaag 716  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675660 atgaaaagaaagaaaggagttcagggagattgattggtaattggtttgaaacttgaaaaagaaagccaagatttagaatgttatttatagacagacaaag 39675561  T
Q  717 aataagagag----------------tgaggaagtttcatagttacatcgtaattaactcgtgcacaacgagggaatattgtagtaatgtcaagataata 800  Q
    ||||||||||                ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39675560 aataagagagtgagtgagagtgagagtgaggaagtttcatagttagatcgtaattaactcgtgaacaacgagggaatattgtagtaatgtcaagataata 39675461  T
Q  801 tattttgtggagatgctaacat--cacatcatcacaagaagcctttacttgact 852  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  39675460 tattttgtggagatgctaacatcacacatcatcacaagaagcctttacttgact 39675407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 10873609 - 10873803
Alignment:
Q  17 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 116  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||    
T  10873609 aatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggc 10873708  T
Q  117 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 211  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10873709 aatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 10878680 - 10878874
Alignment:
Q  17 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 116  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||    
T  10878680 aatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggc 10878779  T
Q  117 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 211  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10878780 aatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10878874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 10883751 - 10883945
Alignment:
Q  17 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 116  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||    
T  10883751 aatatagaatcgtaatcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccacggcttggttcctaatatttgctgcacgtcggc 10883850  T
Q  117 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 211  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10883851 aatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10883945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 278 - 486
Target Start/End: Complemental strand, 10866426 - 10866218
Alignment:
Q  278 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 377  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10866426 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10866327  T
Q  378 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 477  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10866326 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10866227  T
Q  478 tgttaagta 486  Q
    |||||||||    
T  10866226 tgttaagta 10866218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 278 - 486
Target Start/End: Original strand, 10873879 - 10874087
Alignment:
Q  278 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 377  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10873879 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10873978  T
Q  378 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 477  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10873979 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10874078  T
Q  478 tgttaagta 486  Q
    |||||||||    
T  10874079 tgttaagta 10874087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 278 - 486
Target Start/End: Original strand, 10878950 - 10879158
Alignment:
Q  278 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 377  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10878950 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10879049  T
Q  378 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 477  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10879050 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10879149  T
Q  478 tgttaagta 486  Q
    |||||||||    
T  10879150 tgttaagta 10879158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 278 - 486
Target Start/End: Original strand, 10884021 - 10884229
Alignment:
Q  278 tcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggaga 377  Q
    |||||||||||||||||||||||||||||||||| |||||||||||   ||||||||| || | |||| ||||||||||| ||||| |||||||| ||||    
T  10884021 tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga 10884120  T
Q  378 ttgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtt 477  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| ||||||| |   ||    
T  10884121 ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt 10884220  T
Q  478 tgttaagta 486  Q
    |||||||||    
T  10884221 tgttaagta 10884229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 10866696 - 10866502
Alignment:
Q  17 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 116  Q
    ||||||||||  || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    || ||||||||||    
T  10866696 aatatagaattgtagtcaaaaccttccatcggtaaaccttcaagtgaccttccggtaactctctccaccgcttggttcctaatatttgctgcacgtcggc 10866597  T
Q  117 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 211  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||||| |||| ||||||||||    
T  10866596 aatctccaagcttggattcaagcgagtaagatggaattgatcctgacaccactgcactgacaacctcctcgtcttccatggacataactttttgg 10866502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 272 - 497
Target Start/End: Original strand, 10887942 - 10888167
Alignment:
Q  272 acttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatct 371  Q
    ||||| ||||| || ||||||||||||| ||||||||||  ||||||||||||  |||||||||  | | |||| ||||||||||||| ||||| |||||    
T  10887942 acttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatct 10888041  T
Q  372 cggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaa 471  Q
    | |||| ||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||||     
T  10888042 cagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaac 10888141  T
Q  472 agtgtttgttaagtaaagtgaagaag 497  Q
    || ||||||||| || ||||||||||    
T  10888142 agcgtttgttaaatacagtgaagaag 10888167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 10887669 - 10887863
Alignment:
Q  17 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 116  Q
    ||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||   || ||||| ||||    
T  10887669 aatatagaatcgtagtcaaaacctttcatcggtaaaccttcaagtgaccttccggtaaccctctccactgcttggttcctaatctttgctgcacgacggc 10887768  T
Q  117 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccatcgacaaaactttttgg 211  Q
    ||||||| |||||||| ||||| |||||||| ||||||||||| || ||||||||||| |||||||| || |||||||| |||| ||||||||||    
T  10887769 aatctccgagcttcgactcaagggagtaagaaggaattgatcccgataccactgcaccgacaacctcttcgtcttccatggacataactttttgg 10887863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 295 - 495
Target Start/End: Complemental strand, 10045975 - 10045775
Alignment:
Q  295 atgaaggatgaaggcaacgccgaagaaagccgtaaggtagataaggcaagcaatgagggaaactagagcaagaatctcggagattgtgaggacatggaga 394  Q
    |||||| |||||| ||| ||||||||||||| ||||||| |||| | |||| ||||||||||| | | |   |||||| ||||||||||| ||||| |||    
T  10045975 atgaagaatgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaaga 10045876  T
Q  395 ggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaagagaccgaagaaaaaagtgtttgttaagtaaagtgaag 494  Q
    ||||| |||||||||||||| |||||||||| || ||||||||| || |||||||||||||| |||||||||||||  | |||||||||||| |||||||    
T  10045875 ggtgtggaggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaag 10045776  T
Q  495 a 495  Q
    |    
T  10045775 a 10045775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 10046316 - 10046138
Alignment:
Q  17 aatatagaatcataatcaaaaccttccattggtaaaccttcaagtgaccttccagtaactctctccacagcttggttcctaatcacagcagcacgtcggc 116  Q
    ||||| ||||||||||||||||||||||||||||||||    |||||| |||| |||||||||||||| |||||||| |  ||| | || ||||||  ||    
T  10046316 aatatcgaatcataatcaaaaccttccattggtaaacccgagagtgactttccggtaactctctccaccgcttggttacgtatcgccgccgcacgtttgc 10046217  T
Q  117 aatctccaagcttcgattcaagcgagtaagatggaattgatccagacaccactgcaccaacaacctcctcatcttccat 195  Q
    ||||||| || || |||||||||||||| || |||||||  || |  ||||| ||||  |||||||| |||||||||||    
T  10046216 aatctccgagttttgattcaagcgagtatgacggaattgtaccggttaccaccgcacggacaacctcgtcatcttccat 10046138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 875 - 966
Target Start/End: Complemental strand, 39675353 - 39675263
Alignment:
Q  875 tgtgcacagactaattaagttttaaaaaactagtgttattnnnnnnnncaaatttgaaagaaacaaagttttaaataattcgttgaacgtaa 966  Q
    |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||    
T  39675353 tgtgcacagactaattaagttttaaaaaactagtgttat-aaaaaaaacaaatttgaaagaaacaaagttttaaataattcattgaacgtaa 39675263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 800 - 853
Target Start/End: Complemental strand, 10865823 - 10865768
Alignment:
Q  800 atattttgtggaga--tgctaacatcacatcatcacaagaagcctttacttgacta 853  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||||| |||||||    
T  10865823 atattttgtggagagatgctaacattacatcatcactagaagcctttatttgacta 10865768  T

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