View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7690_low_13 (Length: 287)

Name: NF7690_low_13
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7690_low_13
NF7690_low_13
[»] chr2 (4 HSPs)
chr2 (1-227)||(9788302-9788528)
chr2 (35-129)||(9778214-9778305)
chr2 (229-274)||(28400156-28400201)
chr2 (229-258)||(35488342-35488371)
[»] chr8 (1 HSPs)
chr8 (229-274)||(44082618-44082663)
[»] chr5 (1 HSPs)
chr5 (229-274)||(38357956-38358001)
[»] chr7 (2 HSPs)
chr7 (229-266)||(18767905-18767942)
chr7 (229-258)||(18671675-18671704)
[»] chr3 (2 HSPs)
chr3 (229-274)||(45684665-45684710)
chr3 (229-258)||(15481363-15481392)
[»] chr6 (1 HSPs)
chr6 (229-258)||(9565872-9565901)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9788302 - 9788528
Alignment:
Q  1 cgaatatatcagtttagtcacactatttgtaccaatcttttacgttattgacatagcagcataataagtttagacatttgtcagtatcacaatctaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9788302 cgaatatatcagtttagtcacactatttgtaccaatcttttacgttattgacatagcagcataataagtttagacatttgtcagtatcacaatctaattt 9788401  T
Q  101 gggacatttttaacagaatgagccatttg-cnnnnnnnnntccacaaaatcacaacaatatatttttaacacttacctataataatatatttctatcact 199  Q
    |||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  9788402 gggacatttttaacagaatgagccatttgtaaaaaaaaaatccacaaaatcacaacaatatatttttaacacttacctataataatatatttttat-act 9788500  T
Q  200 atgagatgaatttttcctttaatattat 227  Q
    ||| ||||||||||||||||||||||||    
T  9788501 atgcgatgaatttttcctttaatattat 9788528  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 9778214 - 9778305
Alignment:
Q  35 atcttttacgttattgacatagcagcataataagtttagacatttgtcagtatcacaatctaatttgggacatttttaacagaatgagccatttg 129  Q
    ||||||||| |||||||||| | ||   |||||| ||| | |||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  9778214 atcttttaccttattgacatggaag---aataaggttataaatttgtcaatatcacaatctaatttgggacaattttaacagaatgaaccatttg 9778305  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 28400156 - 28400201
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatggcattggtgtcacaggt 274  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||    
T  28400156 gtggcgggaggtaggtaggattcgtgatggcgtcggtgacacaggt 28400201  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 35488371 - 35488342
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatgg 258  Q
    ||||||||||||||||||||||||||||||    
T  35488371 gtggcgggaggtaggtaggattcgtgatgg 35488342  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 44082618 - 44082663
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatggcattggtgtcacaggt 274  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||    
T  44082618 gtggcgggaggtaggtaggattcgtgatggcgttggtgacacaggt 44082663  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 38358001 - 38357956
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatggcattggtgtcacaggt 274  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||    
T  38358001 gtggcgggaggtaggtaggattcgtgatggcgttggtgacacaggt 38357956  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 266
Target Start/End: Complemental strand, 18767942 - 18767905
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatggcattggtg 266  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  18767942 gtggcgggaggtaggtaggattcgtgatggcgttggtg 18767905  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 18671704 - 18671675
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatgg 258  Q
    ||||||||||||||||||||||||||||||    
T  18671704 gtggcgggaggtaggtaggattcgtgatgg 18671675  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 45684710 - 45684665
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatggcattggtgtcacaggt 274  Q
    ||||||||||||||||||||||||||||||| | |||| |||||||    
T  45684710 gtggcgggaggtaggtaggattcgtgatggcgtcggtgacacaggt 45684665  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 15481363 - 15481392
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatgg 258  Q
    ||||||||||||||||||||||||||||||    
T  15481363 gtggcgggaggtaggtaggattcgtgatgg 15481392  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 9565901 - 9565872
Alignment:
Q  229 gtggcgggaggtaggtaggattcgtgatgg 258  Q
    ||||||||||||||||||||||||||||||    
T  9565901 gtggcgggaggtaggtaggattcgtgatgg 9565872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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