View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7690_low_18 (Length: 236)
Name: NF7690_low_18
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7690_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 46356659 - 46356867
Alignment:
| Q |
19 |
cacaacaatggcttcactaacaccaggcctaatcctcaaactcctccaagcaatgaacaccgatacacgtgtcaccggcgaccaccgttctcctcttctc |
118 |
Q |
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| T |
46356659 |
cacaacaatggcttcactaacaccaggcctaatcctcaaactcctccaagcaatgaacaccgatacacgtgtcaccggcgaccaccgttctcctcttctc |
46356758 |
T |
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| Q |
119 |
caactcatcggaattgtccccgcattatccagctctgatctcttctccaacgaaggcttctacctcaacctctctgattctctcaactccacctacgttc |
218 |
Q |
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|||||||| |||||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46356759 |
caactcattggaattgtccccgctttatccagctccgatctcttttcaaacgaaggcttctacctcaacctctctgattctctcaactccacctacgttc |
46356858 |
T |
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| Q |
219 |
ttctctctc |
227 |
Q |
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||||||||| |
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| T |
46356859 |
ttctctctc |
46356867 |
T |
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