View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7690_low_2 (Length: 546)

Name: NF7690_low_2
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7690_low_2
NF7690_low_2
[»] chr2 (6 HSPs)
chr2 (1-259)||(15396268-15396527)
chr2 (324-546)||(15396012-15396234)
chr2 (101-412)||(15387627-15387939)
chr2 (182-263)||(10953652-10953733)
chr2 (151-220)||(6179297-6179366)
chr2 (395-459)||(8966790-8966854)
[»] chr6 (4 HSPs)
chr6 (406-455)||(30603465-30603514)
chr6 (352-423)||(7379637-7379709)
chr6 (185-247)||(14161088-14161150)
chr6 (151-308)||(3113135-3113290)
[»] chr5 (3 HSPs)
chr5 (386-447)||(29161169-29161231)
chr5 (350-455)||(5270569-5270676)
chr5 (353-421)||(37326263-37326333)
[»] chr8 (3 HSPs)
chr8 (149-206)||(11207697-11207754)
chr8 (268-306)||(25016615-25016653)
chr8 (272-308)||(30198180-30198216)
[»] chr7 (2 HSPs)
chr7 (362-452)||(48433166-48433257)
chr7 (386-469)||(33008493-33008578)
[»] chr3 (3 HSPs)
chr3 (363-455)||(1250680-1250773)
chr3 (395-451)||(3727273-3727330)
chr3 (362-461)||(44722796-44722897)
[»] chr4 (2 HSPs)
chr4 (352-422)||(5912660-5912732)
chr4 (388-455)||(5958671-5958739)
[»] chr1 (1 HSPs)
chr1 (407-447)||(4376962-4377002)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 15396527 - 15396268
Alignment:
Q  1 atcattctaaataaaactgcacccaattgatatgattgcggtgattgaaaa-ggttgcgcatcattctaaataacttgcttaatgattgaaaaggttgtg 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15396527 atcattctaaataaaactgcacccaattgatatgattgcggtgattgaaaaaggttgcgcatcattctaaataacttgcttaatgattgaaaaggttgtg 15396428  T
Q  100 ttgtttccaataggtttatgatattctaaacaccacaggagcaatcaaatgcatggctattagtatcttacaatatatgcgtgttgtatctcgattccat 199  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |    
T  15396427 ttgtttccaataggtttatgatattctaaacaccacaggtgcaatcaaatgcatggctattagtatcttacaatatatgcttgttgtatctcgattcagt 15396328  T
Q  200 acaaaactgaacccaattgatatgcatccctactatgcatctattttgcacataaatctc 259  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||    
T  15396327 acaaaactgaacccaattgatatgaatctctactatgtatctattttgcacataaatctc 15396268  T

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Target: chr2; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 324 - 546
Target Start/End: Complemental strand, 15396234 - 15396012
Alignment:
Q  324 gtcaactttgtaattgtatacttggtcacttttctttttcatttgatttacgatttgaatactgaattattttgaggttctatatgatatatcagcttac 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  15396234 gtcaactttgtaattgtatacttggtcacttttctttttcatttgatttacgatttgaacattgaattattttgaggttctatatgatatatcagcttac 15396135  T
Q  424 agttttgctatgccatttgtttttacttaaaatgtcatgattttatcagtgatgcatcttagtattcataaataagattctattcacaattcgnnnnnnn 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||           
T  15396134 agttttgctatgccatttgtttttacttaaaatgtcatgattttatcggtgatgcatcttacgattcataaataagattctattcacaattcgaaaaaaa 15396035  T
Q  524 taggtctcccaattcttgatttg 546  Q
    |||||||||||||||||||||||    
T  15396034 taggtctcccaattcttgatttg 15396012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 101 - 412
Target Start/End: Complemental strand, 15387939 - 15387627
Alignment:
Q  101 tgtttccaataggtttatgatattctaaacaccacagg----agcaatcaaatgcatggctattagtatcttacaatatatgcgtgttgtatctcgattc 196  Q
    ||||||||| | ||||||||||||||||||||||| ||    | |||||||||||||||| |||||||||||||||||||  ||||| ||||||||||||    
T  15387939 tgtttccaacaagtttatgatattctaaacaccacgggtgcaatcaatcaaatgcatggccattagtatcttacaatatacacgtgtcgtatctcgattc 15387840  T
Q  197 catacaaaactgaacccaattgatatgcatccctactatgcatctattttgcacataaatctcattttgattctcaattcattctaaagaatcgttacct 296  Q
     |||||||||| ||||||||| ||||| ||||||||| |  ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||  |||||    
T  15387839 aatacaaaactaaacccaattaatatgaatccctactttctatctactttccacataaatctcattttgaatctcaattcattctaaagaatcactacct 15387740  T
Q  297 aaacttagtgtatcca---tcnnnnnnnnngtcaactttgtaattgtatacttggtcacttttctttttcatttgatttacgatttgaatactgaattat 393  Q
    ||||||||||||||||   ||         |||||||      ||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||     
T  15387739 aaacttagtgtatccatcttcttcttttttgtcaact------ttgtatagttggtcacttttctttttcatttgatttccaatttgaatattgaattac 15387646  T
Q  394 tttgaggttctatatgata 412  Q
    |||||||||||||||||||    
T  15387645 tttgaggttctatatgata 15387627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 10953733 - 10953652
Alignment:
Q  182 gttgtatctcgattccatacaaaactgaacccaattgatatgcatccctactatgcatctattttgcacataaatctcattt 263  Q
    ||||||||| ||||| |||||||||| ||   |||||||| | ||||||| ||||||||||||||| |||| || |||||||    
T  10953733 gttgtatctagattcaatacaaaactaaatataattgatacgaatccctagtatgcatctattttgaacatgaacctcattt 10953652  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 6179366 - 6179297
Alignment:
Q  151 catggctattagtatcttacaatatatgcgtgttgtatctcgattccatacaaaactgaacccaattgat 220  Q
    ||||| |||||||||||||| ||| ||||  |||||||||| |||  |||| ||| ||||||||||||||    
T  6179366 catggttattagtatcttacgataaatgcaagttgtatctcaatttgatactaaattgaacccaattgat 6179297  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 8966854 - 8966790
Alignment:
Q  395 ttgaggttctatatgatatatcagcttacagttttgctatgccatttgtttttac-ttaaaatgtc 459  Q
    ||||||||| |||| ||||||||||||| | |||||||| | ||||||||||||| ||||||||||    
T  8966854 ttgaggttc-atataatatatcagcttataattttgctacgtcatttgtttttactttaaaatgtc 8966790  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 30603465 - 30603514
Alignment:
Q  406 tatgatatatcagcttacagttttgctatgccatttgtttttacttaaaa 455  Q
    |||||||||||| |||| |||||||||||| |||||||||||||||||||    
T  30603465 tatgatatatcaacttatagttttgctatgtcatttgtttttacttaaaa 30603514  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 423
Target Start/End: Original strand, 7379637 - 7379709
Alignment:
Q  352 cttttctttttcatttgatttacgatttgaatactgaattattttgaggttc-tatatgatatatcagcttac 423  Q
    |||||||||||||||||||||| || ||||||   ||||||| | ||||||| ||||||||||| ||||||||    
T  7379637 cttttctttttcatttgatttatgacttgaatctagaattatatagaggttcatatatgatataccagcttac 7379709  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 14161088 - 14161150
Alignment:
Q  185 gtatctcgattccatacaaaactgaacccaattgatatgcatccctactatgcatctattttg 247  Q
    |||||| ||||| ||||||||||||||||| | |||||| ||||||| | || ||||||||||    
T  14161088 gtatcttgattcgatacaaaactgaacccactcgatatgaatccctagtgtgaatctattttg 14161150  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 308
Target Start/End: Original strand, 3113135 - 3113290
Alignment:
Q  151 catggctattagtatcttacaatatatgcgtgttgtatctcgattccatacaaaactgaacccaattgatatgcatccctactatgcatctattttgcac 250  Q
    ||||| ||| |||||||||| ||| ||||| ||  ||||||||||  | || |  ||||||||||| |||||| | | ||| | ||||||||||| | ||    
T  3113135 catggttatcagtatcttacgatacatgcgagtcatatctcgattaaaaactagtctgaacccaatcgatatgaacctctagtgtgcatctatttgg-ac 3113233  T
Q  251 ataaatctcattttgattctcaattcattctaaagaatcgttacctaaacttagtgta 308  Q
    || |||||||| |||| ||  |||||||||||| |||||  |||||||| ||||||||    
T  3113234 atgaatctcatcttgaatcctaattcattctaatgaatcactacctaaa-ttagtgta 3113290  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 447
Target Start/End: Original strand, 29161169 - 29161231
Alignment:
Q  386 tgaattattttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgttttt 447  Q
    |||||||||||||||||| ||||||||||||||||||  | ||||| |||| |||||||||||    
T  29161169 tgaattattttgaggttcatatatgatatatcagcttttaattttgttatgtcatttgttttt 29161231  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 455
Target Start/End: Original strand, 5270569 - 5270676
Alignment:
Q  350 cacttttctttt-tcatttgatttacgatttgaatactgaattattttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgttttt 447  Q
    |||| ||||||| |||||||||||| || |||||   ||||||||| ||| |||| ||||||||||| || |||| | || ||||||| || ||||||||    
T  5270569 cactattcttttctcatttgatttatgacttgaaccttgaattattctgaagttcatatatgatataccaacttataattctgctatgtcacttgttttt 5270668  T
Q  448 acttaaaa 455  Q
    ||||||||    
T  5270669 acttaaaa 5270676  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 37326263 - 37326333
Alignment:
Q  353 ttttctttt-tcatttgatttacgatttgaatactgaattattttgaggttc-tatatgatatatcagctt 421  Q
    ||||||||| |||||||||||| |||||||||  ||||| ||||||| |||| |||||||||||| |||||    
T  37326263 ttttcttttgtcatttgatttatgatttgaatcttgaatcattttgatgttcgtatatgatatattagctt 37326333  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 11207754 - 11207697
Alignment:
Q  149 tgcatggctattagtatcttacaatatatgcgtgttgtatctcgattccatacaaaac 206  Q
    ||||||| |||||||||| ||||||| ||||  ||||||||||||||| |||||||||    
T  11207754 tgcatggttattagtatcatacaatacatgcaagttgtatctcgattcaatacaaaac 11207697  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 25016615 - 25016653
Alignment:
Q  268 tctcaattcattctaaagaatcgttacctaaacttagtg 306  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  25016615 tctcaattcattctaatgaatcattacctaaacttagtg 25016653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 30198180 - 30198216
Alignment:
Q  272 aattcattctaaagaatcgttacctaaacttagtgta 308  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  30198180 aattcattccaaagaatcattacctaaacttagtgta 30198216  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 452
Target Start/End: Complemental strand, 48433257 - 48433166
Alignment:
Q  362 tcatttgatttacgatttgaatactgaattattttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgtttttactta 452  Q
    |||||||||||  || ||||||  |||||| ||||||||||| |||||||||||||| |||| | |||||| | | || |||||||||||||    
T  48433257 tcatttgatttttgacttgaatcttgaattcttttgaggttcgtatatgatatatcaacttatatttttgccaagtcacttgtttttactta 48433166  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 469
Target Start/End: Complemental strand, 33008578 - 33008493
Alignment:
Q  386 tgaattattttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgtttttactt-aaaatgtcatgattttat 469  Q
    |||||||||| ||||||| |||||||||||||| |||| |  || | |||| || |||||||||||| |||||||||| |||||||    
T  33008578 tgaattatttcgaggttcatatatgatatatcaacttatatattagttatgtcacttgtttttactttaaaatgtcataattttat 33008493  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 455
Target Start/End: Complemental strand, 1250773 - 1250680
Alignment:
Q  363 catttgatttacgatttgaatactgaattattttgagg-ttctatatgatatatcagcttacagttttgctatgccatttgtttttacttaaaa 455  Q
    |||||||||||| | |||||| |||||||||||| ||| |  || ||||||||||||||||   || |||||||  | ||||||||||||||||    
T  1250773 catttgatttacaacttgaatcctgaattatttttaggctagtagatgatatatcagcttatgattgtgctatgttacttgtttttacttaaaa 1250680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 3727273 - 3727330
Alignment:
Q  395 ttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgtttttactt 451  Q
    ||||||||| ||||||||||||||||||| | ||| |||||| || ||||||||||||    
T  3727273 ttgaggttcgtatatgatatatcagcttataatttagctatgtcacttgtttttactt 3727330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 461
Target Start/End: Original strand, 44722796 - 44722897
Alignment:
Q  362 tcatttgatttacgatttgaatactgaattattttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgtttttact-taaaatgtc 459  Q
    ||||||||||||||| |  |||| ||| |||||| ||||||| ||||||||||  || |||| | ||||||||||  | ||||||||||| |||||||||    
T  44722796 tcatttgatttacgactcaaatattgagttatttagaggttcgtatatgatatgccaacttatatttttgctatgttaattgtttttactgtaaaatgtc 44722895  T
Q  460 at 461  Q
    ||    
T  44722896 at 44722897  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 352 - 422
Target Start/End: Original strand, 5912660 - 5912732
Alignment:
Q  352 cttttctttt-tcatttgatttacgatttgaatactgaattattttgaggttc-tatatgatatatcagctta 422  Q
    |||||||||| ||||||||| ||  ||||||||  |||||||||||||||||| ||||| |||||||| ||||    
T  5912660 cttttcttttgtcatttgatatataatttgaatcttgaattattttgaggttcatatataatatatcatctta 5912732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 5958671 - 5958739
Alignment:
Q  388 aattattttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgtttttacttaaaa 455  Q
    |||||||||||||||  ||||| ||||||||  ||| | ||||||| || |||||||||||||||||||    
T  5958671 aattattttgaggtttgtatataatatatcaatttataattttgctttgtcatttgtttttacttaaaa 5958739  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 447
Target Start/End: Original strand, 4376962 - 4377002
Alignment:
Q  407 atgatatatcagcttacagttttgctatgccatttgttttt 447  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  4376962 atgatatatcaacttataattttgctatgccatttgttttt 4377002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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