View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7690_low_3 (Length: 537)

Name: NF7690_low_3
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7690_low_3
NF7690_low_3
[»] chr2 (13 HSPs)
chr2 (150-519)||(8237516-8237890)
chr2 (87-187)||(12232563-12232655)
chr2 (87-188)||(22563418-22563512)
chr2 (127-187)||(17200078-17200138)
chr2 (87-187)||(29893007-29893098)
chr2 (87-187)||(4371454-4371547)
chr2 (87-187)||(20296624-20296717)
chr2 (87-187)||(22563210-22563303)
chr2 (87-179)||(21265770-21265855)
chr2 (127-167)||(29892820-29892860)
chr2 (127-164)||(156971-157008)
chr2 (130-179)||(20296270-20296319)
chr2 (139-171)||(33491421-33491453)
[»] chr7 (11 HSPs)
chr7 (130-192)||(25048268-25048330)
chr7 (87-196)||(19318138-19318240)
chr7 (134-196)||(26903423-26903484)
chr7 (87-171)||(35207194-35207271)
chr7 (131-188)||(2834444-2834501)
chr7 (134-179)||(6408261-6408306)
chr7 (87-124)||(26903636-26903673)
chr7 (148-187)||(19318481-19318520)
chr7 (130-187)||(35207419-35207476)
chr7 (130-179)||(39983881-39983930)
chr7 (150-186)||(2830833-2830869)
[»] chr8 (11 HSPs)
chr8 (87-180)||(6911036-6911122)
chr8 (95-187)||(14999387-14999476)
chr8 (95-187)||(15009074-15009159)
chr8 (140-187)||(41722081-41722128)
chr8 (87-187)||(8489373-8489466)
chr8 (87-187)||(16324844-16324937)
chr8 (87-186)||(41403760-41403852)
chr8 (130-187)||(41404004-41404061)
chr8 (127-187)||(43801470-43801530)
chr8 (130-187)||(14999171-14999228)
chr8 (130-187)||(43801715-43801772)
[»] chr5 (6 HSPs)
chr5 (90-187)||(36955505-36955595)
chr5 (87-188)||(31194173-31194267)
chr5 (87-187)||(17370067-17370160)
chr5 (87-187)||(31193965-31194058)
chr5 (130-188)||(8754657-8754715)
chr5 (130-187)||(36955303-36955360)
[»] chr3 (11 HSPs)
chr3 (91-180)||(43797564-43797646)
chr3 (87-186)||(4041391-4041483)
chr3 (131-187)||(38499819-38499875)
chr3 (127-187)||(38500062-38500122)
chr3 (150-188)||(29828684-29828722)
chr3 (130-187)||(8799317-8799374)
chr3 (87-184)||(25349918-25350008)
chr3 (130-181)||(53197227-53197278)
chr3 (87-187)||(43797352-43797445)
chr3 (87-124)||(46883471-46883508)
chr3 (130-187)||(48346223-48346280)
[»] chr1 (11 HSPs)
chr1 (87-180)||(49777031-49777117)
chr1 (87-186)||(27171800-27171892)
chr1 (127-187)||(3385552-3385612)
chr1 (87-181)||(34969991-34970078)
chr1 (130-189)||(24882969-24883028)
chr1 (87-187)||(24883176-24883269)
chr1 (127-187)||(3385308-3385368)
chr1 (127-178)||(33401097-33401148)
chr1 (130-188)||(49776818-49776876)
chr1 (87-124)||(13946978-13947015)
chr1 (87-124)||(27172007-27172044)
[»] chr4 (7 HSPs)
chr4 (87-181)||(5465859-5465946)
chr4 (130-188)||(50544255-50544313)
chr4 (150-187)||(26297323-26297360)
chr4 (130-181)||(46993073-46993124)
chr4 (130-181)||(54316073-54316124)
chr4 (87-187)||(24673929-24674022)
chr4 (130-171)||(42475892-42475933)
[»] chr6 (3 HSPs)
chr6 (130-188)||(16125521-16125579)
chr6 (87-187)||(22748588-22748681)
chr6 (130-180)||(22748832-22748882)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 150 - 519
Target Start/End: Complemental strand, 8237890 - 8237516
Alignment:
Q  150 taaatggagcttagcctaaatgaagcatacccaaactcgatttttatggtta--agcttgttctaaacataatgccatattacgtctagaaaaggtggaa 247  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  8237890 taaatggagcttagcctaaatggagcatacctaaactcgatttttacggttataagcttgttctaaacataatgccatattacgtctagaaaaggtggaa 8237791  T
Q  248 tgacaatttacggtggtgaaaaggtggaatgccatatggaaaggtcaattcttnnnnnnntcccacagaaatcccacagtcaatatttatacggaaaaat 347  Q
    |||||||||||||||||| |||     |||  |||||||||| ||||||||||       |||||||||||||||||||| |||||||||||||||||||    
T  8237790 tgacaatttacggtggtgcaaaaagaaaatatcatatggaaaagtcaattctt-aaaaaatcccacagaaatcccacagttaatatttatacggaaaaat 8237692  T
Q  348 gcataattaattatttatgttggttattttaaactagctgctcaataaaggggatccgattgcct----nnnnnnnngtatgtgattctttccggtaaaa 443  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||            |||| ||||| ||||| ||||||    
T  8237691 gcataattaattatttatgttggttattttaaactaactgctcaataaagggtatctgattgcctcagaaaaaaaaagtatatgattttttccagtaaaa 8237592  T
Q  444 aataaggtaaatgatgaatcgagaaaaataggtattttgatcccctacaacatttgtatggtgcaacagtagtgga 519  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8237591 aataaggtaaatgatgaatggagaaaaataggtattttgatcccctacaacatttgtatggtgcaacagtagtgga 8237516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 12232655 - 12232563
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||||||||||| ||||||| |||||||||||||       |||||| |||||||| |||||||||||||||||||||||| |||||| |||||||    
T  12232655 tctcaaccgttagata-ttttttgccacatgtcttaca-------tccaaaccctaaatagagtaaatggagcttagcctaaatggagcatatccaaact 12232564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 22563418 - 22563512
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||||||||||| ||||||| |||||||||| ||       ||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||    
T  22563418 tctcaaccgttagatatttttttgccacatgtcttgca-------tccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaact 22563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 17200138 - 17200078
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||||||||||||||  |||||||||||||| ||||||||| ||||||||| |||||    
T  17200138 ttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 29893007 - 29893098
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||||||||||||  ||||||||||||||||| ||       |||||| |||||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  29893007 tctcaaccgttagata--tttttgtcacatgtcttgca-------tccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccgaact 29893097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 4371547 - 4371454
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||| ||||||| ||||||| |||||||||| ||       |||||| |||||||  |||||||||||||||||||||||| ||||||||| ||||    
T  4371547 tctcaaccattagatatttttttgccacatgtcttgca-------tccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaact 4371455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 20296624 - 20296717
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||||||| |||| ||||||| |||||||||||||       ||||| || |||||  |||||||||||||||||||||||  ||||||||||||||    
T  20296624 tctcaaccgttggatatttttttgccacatgtcttaca-------tccaattcttaaatggagtaaatggagcttagcctaaatagagcatacccaaact 20296716  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 22563303 - 22563210
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||||||| ||| ||||||| |||||||||| ||       |||||| |||||||  |||||||||||||||||||||||| ||||||||| ||||    
T  22563303 tctcaaccgttaaatatttttttgccacatgtcttgca-------tccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaact 22563211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 21265770 - 21265855
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatac 179  Q
    |||||||| ||||||||||||||| |||||||||| ||       |||||| |||||||| ||||||||||||||||| |||||  |||||||    
T  21265770 tctcaaccattagatacttttttgccacatgtcttgca-------tccaaaccctaaatagagtaaatggagcttagcttaaatagagcatac 21265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 29892860 - 29892820
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagccta 167  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  29892860 ttacatccaaatcctaaataaaataaatggagcttaaccta 29892820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 157008 - 156971
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagc 164  Q
    |||||||||||||||||||  |||||||||||||||||    
T  157008 ttacatccaaatcctaaatggagtaaatggagcttagc 156971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 20296319 - 20296270
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatac 179  Q
    |||||||| ||||||| ||||||||||| ||||||| ||||| |||||||    
T  20296319 catccaaaccctaaatgaagtaaatggatcttagccaaaatggagcatac 20296270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 33491421 - 33491453
Alignment:
Q  139 cctaaataaagtaaatggagcttagcctaaatg 171  Q
    |||||||| ||||||||||||||||||||||||    
T  33491421 cctaaatagagtaaatggagcttagcctaaatg 33491453  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 25048268 - 25048330
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcgattt 192  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||    
T  25048268 catccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactccattt 25048330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 19318240 - 19318138
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||| ||||||||| |||||||||||||||||||||       ||||||  ||||||  ||||||||| ||||| |||||||| ||||||||||||||    
T  19318240 tctcaatcgttagatatttttttgtcacatgtcttaca-------tccaaactctaaatggagtaaatggcgcttaacctaaatggagcatacccaaact 19318148  T
Q  187 cgatttttat 196  Q
    || |||||||    
T  19318147 cggtttttat 19318138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 26903484 - 26903423
Alignment:
Q  134 caaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcgatttttat 196  Q
    |||| ||||||| ||||||||| ||||||||||||||| ||||||||| ||||| ||||||||    
T  26903484 caaaccctaaatgaagtaaatgaagcttagcctaaatg-agcatacccgaactcaatttttat 26903423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 35207271 - 35207194
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatg 171  Q
    |||||||||||||||| ||||||| |||||||||| ||       |||||| |||||||  ||||||||||||||||||||||||    
T  35207271 tctcaaccgttagatatttttttgccacatgtcttgca-------tccaaaccctaaatggagtaaatggagcttagcctaaatg 35207194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 2834444 - 2834501
Alignment:
Q  131 atccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcg 188  Q
    ||||||| |||||||  | |||||||| ||||||||||||| ||||||||||||||||    
T  2834444 atccaaaccctaaatggaataaatggaacttagcctaaatggagcatacccaaactcg 2834501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 6408306 - 6408261
Alignment:
Q  134 caaatcctaaataaagtaaatggagcttagcctaaatgaagcatac 179  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||    
T  6408306 caaatcctaaatgaagtaaatggagcttagactaaatggagcatac 6408261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 26903636 - 26903673
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttaca 124  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26903636 tctcaaccgttagatatttttttgtcacatgtcttaca 26903673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 19318481 - 19318520
Alignment:
Q  148 agtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  19318481 agtaaatggagcttagcctaaatggagcatacccgaactc 19318520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 35207419 - 35207476
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||| |||||||  ||||||||||| |||||||||||| |||||| || |||||    
T  35207419 catccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 39983881 - 39983930
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatac 179  Q
    |||||||| |||||||  |||||||||||||| ||||||||| |||||||    
T  39983881 catccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatac 39983930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 2830869 - 2830833
Alignment:
Q  150 taaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  2830869 taaatggagcttaacctaaatgaagcatacccgaact 2830833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 6911122 - 6911036
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacc 180  Q
    |||||| ||||||||| ||||||| |||||||||||||       |||||| |||||||  |||||||||||||||||||||||| ||||||||    
T  6911122 tctcaatcgttagatatttttttgccacatgtcttaca-------tccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacc 6911036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 14999387 - 14999476
Alignment:
Q  95 gttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||| ||||||||||||||||||| || ||   | |||||||||||||||| ||||||||| |||||| |||||||| |||||| || |||||    
T  14999387 gttatatacttttttgtcacatgttttgca---tccatccaaatcctaaatgaagtaaatgtagcttaacctaaatggagcatatccgaactc 14999476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 95 - 187
Target Start/End: Original strand, 15009074 - 15009159
Alignment:
Q  95 gttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||||||||||| ||||||||||||       ||||||| |||||||  |||||||| ||||||||||||||| ||||||||| |||||    
T  15009074 gttagatacttttttgccacatgtcttac-------atccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactc 15009159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 41722081 - 41722128
Alignment:
Q  140 ctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||||||||||| |||||||||||||||||| ||||||| |||||    
T  41722081 ctaaataaagtaaatagagcttagcctaaatgaaacatacccgaactc 41722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 8489466 - 8489373
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||| ||||||||| ||||||| |||||||||||||       |||||| |||||||  | |||||| |||||| |||||||| ||||||||||||||    
T  8489466 tctcaatcgttagatatttttttgccacatgtcttaca-------tccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacccaaact 8489374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 16324937 - 16324844
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||||||||||| ||||||||||||||||       || |||||||| |||||||  | ||||| |||||||||||||||| ||||| ||| ||||    
T  16324937 tctcaaccgttagatatttttttgtcacatgtc-------ttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccgaact 16324845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 41403852 - 41403760
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||| |||||||| ||||||||||||| |||||||       || |||||||||||  ||||||| |||||||  ||||||||||||||||| ||||    
T  41403852 tctcaactgttagatatttttttgtcacatatcttaca-------tcaaaatcctaaatggagtaaattgagcttaatctaaatgaagcatacccgaact 41403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 41404004 - 41404061
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||| |||||||| ||||||| || |||| |||||||| |||||||||||||||    
T  41404004 catccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacccaaactc 41404061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 43801530 - 43801470
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||||||  ||||||  |||||||| || |||||||||||||||||||||| |||||    
T  43801530 ttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactc 43801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 14999228 - 14999171
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||| |||||||  ||||||| |||||||||||||||| |||||| || |||||    
T  14999228 catccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 43801715 - 43801772
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||||  ||||||  |||||||||||||||||||||||| | ||||||| |||||    
T  43801715 catccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 43801772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 36955505 - 36955595
Alignment:
Q  90 caaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||||||||| ||||||| |||||||||| |||       ||||| |||||||| ||||||| |||||||||||||||| ||| |||||||||||    
T  36955505 caaccgttagatatttttttgccacatgtcttgcaa-------ccaaaccctaaatagagtaaatagagcttagcctaaatggagcgtacccaaactc 36955595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 31194173 - 31194267
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||||||| |||| ||||||| |||||||||| ||       |||||| | |||||  |||||||||||||||||||||||| ||||||||| ||||    
T  31194173 tctcaaccgttggatatttttttgccacatgtcttgca-------tccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaact 31194265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 17370160 - 17370067
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||||||||||| ||||||| |||||||||| ||       |||||| |||||||  ||||||||||| ||||| |||||| ||||||||| ||||    
T  17370160 tctcaaccgttagatatttttttgccacatgtcttgca-------tccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaact 17370068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 31194058 - 31193965
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||||||| |||| ||||||| |||||||||| ||       |||||| | |||||  |||||||||||||||||||||||| ||||||||| ||||    
T  31194058 tctcaaccgttggatatttttttgccacatgtcttgca-------tccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaact 31193966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 8754715 - 8754657
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcg 188  Q
    |||||||| |||||||| ||||||||||| |||| ||||||| || |||||| ||||||    
T  8754715 catccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccgaactcg 8754657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 36955360 - 36955303
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||| |||||||  |||||||| ||||||||||||||| ||| ||||| |||||    
T  36955360 catccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactc 36955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 43797564 - 43797646
Alignment:
Q  91 aaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacc 180  Q
    ||||||| ||||||||||||||||||||||| ||       |||||| |||||||| |||||||||| ||||||||||||| ||||||||    
T  43797564 aaccgttggatacttttttgtcacatgtctttca-------tccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacc 43797646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 4041391 - 4041483
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||||||||||| ||||||| |||||||||| ||       |||||| |||||||  |||||||| ||||||||||||||| ||||||||| ||||    
T  4041391 tctcaaccgttagatatttttttgccacatgtcttgca-------tccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 38499875 - 38499819
Alignment:
Q  131 atccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||| |||||||  |||||||||||||||||||||||| ||||||||| |||||    
T  38499875 atccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 38500062 - 38500122
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||||||| ||||| |  |||||||||||||||||||||||| ||||||||| |||||    
T  38500062 ttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 29828722 - 29828684
Alignment:
Q  150 taaatggagcttagcctaaatgaagcatacccaaactcg 188  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  29828722 taaatggagcttagcctaaatgaagcatacccgaactcg 29828684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 8799374 - 8799317
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||| |||||||  |||||||||||| ||||||||||| ||||||||| |||||    
T  8799374 catccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactc 8799317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 25349918 - 25350008
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaa 184  Q
    |||||||||||||||  ||||||| ||||||||||||       ||||||| |||||||| | |||||||||||||   |||||| ||||||||||||    
T  25349918 tctcaaccgttagatgtttttttggcacatgtcttac-------atccaaaccctaaatagaataaatggagcttaatttaaatggagcatacccaaa 25350008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 53197227 - 53197278
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccc 181  Q
    |||||||| |||||||  |||||||| ||||||||||||||| |||||||||    
T  53197227 catccaaaccctaaatggagtaaatgaagcttagcctaaatggagcataccc 53197278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 43797445 - 43797352
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||||||| |||| ||||||| |||||||||| ||       |||||| | |||||  |||||||||||||||||||||||| ||||||  ||||||    
T  43797445 tctcaaccgttggatatttttttgccacatgtcttgca-------tccaaaccttaaatggagtaaatggagcttagcctaaatggagcatattcaaact 43797353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 46883508 - 46883471
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttaca 124  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  46883508 tctcaaccgttagatatttttttgccacatgtcttaca 46883471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 48346223 - 48346280
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||||| ||||||||||||||| || || | |||||||| ||||||||| |||||    
T  48346223 catccaaattctaaataaagtaaatagaactcaacctaaatggagcatacccgaactc 48346280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 49777031 - 49777117
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacc 180  Q
    |||||||||||||||| ||||||||||||||||       || |||||||| |||||||| | ||||||||| |||||||||||| ||||||||    
T  49777031 tctcaaccgttagatatttttttgtcacatgtc-------ttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 27171892 - 27171800
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||| ||||||||||| ||||||| |||||||||||||       |||||| | |||||  |||||||| ||||||||||||||||||||||||| ||||    
T  27171892 tctcgaccgttagatatttttttgccacatgtcttaca-------tccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 3385552 - 3385612
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||||||| |||||||  |||||||||||||| ||||||||| ||||||||| |||||    
T  3385552 ttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 34970078 - 34969991
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccc 181  Q
    |||||||||||||||| ||||||  |||||||||| ||       ||||||||||||||  ||||||||||| ||| ||||||||||||||||||    
T  34970078 tctcaaccgttagatatttttttaccacatgtcttgca-------tccaaatcctaaattgagtaaatggagtttaacctaaatgaagcataccc 34969991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 24883028 - 24882969
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcga 189  Q
    |||||||| |||||||  ||||||||||| |||||||||||| ||||||||| |||||||    
T  24883028 catccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactcga 24882969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 24883176 - 24883269
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||||||||||||| ||||||| ||||| |||| ||       |||||| |||||||  |||||||||||||||||||||||| | ||||||| ||||    
T  24883176 tctcaaccgttagatatttttttgccacatatcttgca-------tccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaact 24883268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 3385368 - 3385308
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    ||||||||||| |||||||   ||||| | ||||||||||||||||||||||||| |||||    
T  3385368 ttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactc 3385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 33401097 - 33401148
Alignment:
Q  127 ttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcata 178  Q
    ||||||| ||| | |||||||||||||| |||||||||||||||| ||||||    
T  33401097 ttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcata 33401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 49776876 - 49776818
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcg 188  Q
    ||||||||||||||||  |||||||  |||||||| |||||| ||||||||| ||||||    
T  49776876 catccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaactcg 49776818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 13947015 - 13946978
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttaca 124  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  13947015 tctcaaccgttagatatttttttgccacatgtcttaca 13946978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 124
Target Start/End: Original strand, 27172007 - 27172044
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttaca 124  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  27172007 tctcaaccgttagatatttttttgccacatgtcttaca 27172044  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 5465946 - 5465859
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccc 181  Q
    |||||||||||||||| ||||||| |||||||||||||       || ||| ||||||| ||||||||| | ||||||||||||| |||||||||    
T  5465946 tctcaaccgttagatatttttttgccacatgtcttaca-------tctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcataccc 5465859  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 50544313 - 50544255
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcg 188  Q
    |||||||| |||||||| | |||||||||||||||||||||| |||||| || ||||||    
T  50544313 catccaaaccctaaatagaataaatggagcttagcctaaatggagcatatccgaactcg 50544255  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 26297360 - 26297323
Alignment:
Q  150 taaatggagcttagcctaaatgaagcatacccaaactc 187  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26297360 taaatggagcttagcctaaatggagcatacccaaactc 26297323  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 46993124 - 46993073
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccc 181  Q
    |||||||| |||||||| | ||||||||||||| |||||||| |||||||||    
T  46993124 catccaaaccctaaatagaataaatggagcttaacctaaatggagcataccc 46993073  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 54316073 - 54316124
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcataccc 181  Q
    |||||||| |||||||  ||||||| |||||||||||||||| |||||||||    
T  54316073 catccaaaccctaaatggagtaaatagagcttagcctaaatggagcataccc 54316124  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 24673929 - 24674022
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    |||||| ||||||||| |||||||||| |||||||||       |||||||  ||||||| |||||||| || |||||||||||| |||||| || ||||    
T  24673929 tctcaatcgttagatatttttttgtcatatgtcttac-------atccaaactctaaatagagtaaatgaagtttagcctaaatggagcatatccgaact 24674021  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 42475933 - 42475892
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatg 171  Q
    |||||||| |||||||| |||||||| |||||||||||||||    
T  42475933 catccaaaccctaaatagagtaaatgaagcttagcctaaatg 42475892  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 16125579 - 16125521
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaactcg 188  Q
    |||||||| ||||||| || |||||| || |||||||||||| ||||||||| ||||||    
T  16125579 catccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccgaactcg 16125521  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 22748681 - 22748588
Alignment:
Q  87 tctcaaccgttagatacttttttgtcacatgtcttacaagttacatccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacccaaact 186  Q
    ||||||||||| |||| ||||||| |||||||||| ||       |||||||| |||||  |||||||||||| ||||||||||  ||||||||| ||||    
T  22748681 tctcaaccgttggatatttttttgccacatgtcttgca-------tccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccgaact 22748589  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 22748832 - 22748882
Alignment:
Q  130 catccaaatcctaaataaagtaaatggagcttagcctaaatgaagcatacc 180  Q
    ||||||||||||||||  |||||||||| ||||| ||||||| ||||||||    
T  22748832 catccaaatcctaaatggagtaaatggatcttagtctaaatggagcatacc 22748882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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