View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7690_low_4 (Length: 527)
Name: NF7690_low_4
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7690_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 261 - 511
Target Start/End: Original strand, 37205797 - 37206047
Alignment:
| Q |
261 |
gtgagaactttagcgagtgcagaaccttgcagcggtgtggtttccacccacaagagccacatgtgaactttgttttccaaaagaaagaagcatcaactgt |
360 |
Q |
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| T |
37205797 |
gtgagaactttagcgagtgcagaaccttgcagcggtgtggtttccacccacaagagccacatgtgaactttgttttccaaaagaaagaagcatcaactgt |
37205896 |
T |
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| Q |
361 |
ttcatcctctcaacctccattgttgtttctcgttttcttgttcagaacagcgtcgttttcgtagcttcacccggttgttgctgccatgaaacaccgcacg |
460 |
Q |
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| T |
37205897 |
ttcatcctctcaacctccattgttttttctcgttttgttgttcagaacagcgtcgttttcgttgcttcacccggttgttgctgccatgaaacaccgcacg |
37205996 |
T |
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| Q |
461 |
gcaccacaggaaggggaagaagaaactgaacgctgttctttcagaggaaga |
511 |
Q |
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| T |
37205997 |
gcaccacaggaaggggaagaagaaactgaacgctgttctttcagaggaaga |
37206047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 101 - 191
Target Start/End: Original strand, 37205637 - 37205727
Alignment:
| Q |
101 |
cgtgtatcaggaaccttaatcaccaagaaagcatcagaagttaaaccaaccctaccaccttgaaaatgttgcttacccattacgttaatct |
191 |
Q |
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| T |
37205637 |
cgtgtatcaggaaccttaatcaccaagaaagcatcagaagttaaaccaaccctaccaccttgcaaatgttgcttacccattacgttaatct |
37205727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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