View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7690_low_5 (Length: 501)
Name: NF7690_low_5
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7690_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 112 - 313
Target Start/End: Original strand, 50389052 - 50389255
Alignment:
| Q |
112 |
atttttaatcatataagaatagttctcactaaggtcttagtttacataaagaaaa-aataatggattgaataggcaattttagaagaaaaataaatagtt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50389052 |
atttttaatcatataagaatagttctcactaaggtcttagtttacataaagaaaaaaataatggattgaatagacaattttagaagaaaaataaatagtt |
50389151 |
T |
|
| Q |
211 |
tcacaataaactcaaaattaaaagcatgatagtata-tttataaggatgtgtatttaattctattggattttattcaaaagaaatatatattggattatc |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50389152 |
tcacaataaactcaaaattaaaagcatgatactatattttataaggatgtgtatttaattttattggattttattcaaaagaaatatatattggattatc |
50389251 |
T |
|
| Q |
310 |
aagt |
313 |
Q |
| |
|
|||| |
|
|
| T |
50389252 |
aagt |
50389255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 309 - 485
Target Start/End: Original strand, 50389304 - 50389472
Alignment:
| Q |
309 |
caagtgcaaatttatttatagtcaatatgacaatatcttaagtttttgagacaagatatacatagcatttcaatcatttgtaaatgtactttgctcttaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
50389304 |
caagtgcaaatttatttatagtcaat--------atcttaagtttttgagacaagatatacatagtatttcaatcatttgtaaatgtactttgctcttaa |
50389395 |
T |
|
| Q |
409 |
ctcaatatgaatatgaagatattattatttcttgtgttttagacttttctcatacccgaacagattcatgaacatct |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50389396 |
ctcaatatgaatatgaagatattattatttcttgtgttttagacttttctcatacccgaacagattcatgaacatct |
50389472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 50388974 - 50389062
Alignment:
| Q |
1 |
acttaaactattttacatgcaattatatttctttacacaattaaataattgatattttaaaataatcacaccataatcattcttaatca |
89 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50388974 |
acttaaactattttatatgcaattatatttctttacacaattaaataattgatattttaaaataatcacaccataatcatttttaatca |
50389062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University