View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7690_low_6 (Length: 483)

Name: NF7690_low_6
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7690_low_6
NF7690_low_6
[»] chr5 (15 HSPs)
chr5 (16-472)||(42835110-42835582)
chr5 (88-249)||(16487530-16487691)
chr5 (75-251)||(29417622-29417798)
chr5 (75-251)||(24654559-24654735)
chr5 (137-230)||(42841429-42841522)
chr5 (301-406)||(16487345-16487450)
chr5 (124-205)||(42782296-42782377)
chr5 (134-251)||(21698753-21698870)
chr5 (136-193)||(27174351-27174408)
chr5 (136-214)||(40415105-40415183)
chr5 (97-175)||(42797141-42797219)
chr5 (131-176)||(31788657-31788702)
chr5 (124-205)||(41227038-41227119)
chr5 (387-472)||(42777391-42777476)
chr5 (131-176)||(32031997-32032042)
[»] chr2 (3 HSPs)
chr2 (136-251)||(16920108-16920223)
chr2 (136-174)||(7429892-7429930)
chr2 (136-188)||(29353318-29353370)
[»] chr6 (2 HSPs)
chr6 (107-205)||(21375219-21375317)
chr6 (134-205)||(21379311-21379382)
[»] scaffold0068 (1 HSPs)
scaffold0068 (134-251)||(15040-15157)
[»] scaffold0134 (2 HSPs)
scaffold0134 (134-205)||(17122-17193)
scaffold0134 (301-342)||(16972-17013)
[»] chr8 (1 HSPs)
chr8 (136-188)||(4027058-4027110)
[»] chr4 (1 HSPs)
chr4 (303-347)||(48742657-48742701)


Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 472
Target Start/End: Complemental strand, 42835582 - 42835110
Alignment:
Q  16 caattcaagatgaagaattgtgcgcatgtgattaaggctacaaacgagaaggtaaaggtaagaaaccaatctcatatacctaatgatcttttcttcttta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42835582 caattcaagatgaagaattgtgcgcatgtgattaaggctacaaacgagaatgtaaaggtaagaaaccaatctcatatacctaatgatcttttcttcttta 42835483  T
Q  116 ttctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatca 215  Q
    |||||| |||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  42835482 ttctctccaaaatgtctattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttgtttgataatctttatttcatgactatgtatcg 42835383  T
Q  216 caactctttcttaacaaagaatcatccttattatgac----------------tacatcaaacttttcatacttatttacaagaaccataccagttgcaa 299  Q
    |||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  42835382 caactctttcttaacaaagaatcatccttattatgacgatacatctgtcctcctacatcaaacttttcatacttatttacaagaaccataccagttgcaa 42835283  T
Q  300 actctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccaatatatctgcataaagaagagtatggttccggtt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  42835282 actctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccgatatatctgcataaagaagagtatgattccggtt 42835183  T
Q  400 ttaatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatatt 472  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42835182 ttaatattattggttctggcagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatatt 42835110  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 16487691 - 16487530
Alignment:
Q  88 catatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttg 187  Q
    |||||| |||||||||||||||||| | ||||||  ||| || | || |||||||||||| | |||||||||||||||||||||||||| ||||||||||    
T  16487691 catatatctaatgatcttttcttctctcttctctcaaaactacctatcaaatctttgaagaggtttggatgcgtacacaaatcatggtcgcttttatttg 16487592  T
Q  188 ataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattat 249  Q
    |||| |   |||||||||||||||||| |||   | ||||||||||| ||||| ||||||||    
T  16487591 ataacccacatttcatgactatgtatcgcaataatctcttaacaaaggatcattcttattat 16487530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 29417798 - 29417622
Alignment:
Q  75 aagaaaccaatctcatatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatgg 174  Q
    ||||| |||||| ||||| ||||||||||||| ||||| |||||| | ||||||| | || ||| | |||||||| ||||| || ||||| |||||||||    
T  29417798 aagaagccaatcacatattcctaatgatctttccttctctattctttccaaattacctataaaaccattgaagcgttttggttgtgtacataaatcatgg 29417699  T
Q  175 tcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattatga 251  Q
    ||||||||||| ||||| | |||||||||||| ||||| | | |   |||| |||||||| ||||| ||||||||||    
T  29417698 tcccttttattagataacccttatttcatgaccatgtaccgctatcatttcgtaacaaaggatcattcttattatga 29417622  T

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Target: chr5; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 251
Target Start/End: Original strand, 24654559 - 24654735
Alignment:
Q  75 aagaaaccaatctcatatacctaatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatgg 174  Q
    ||||| |||||| ||||| ||||||||||||| ||||| |||||| | ||||||| | || ||||| || ||||| ||||| || ||||  |||||||||    
T  24654559 aagaagccaatcacatattcctaatgatctttccttctctattctttccaaattacctataaaatcattcaagcgttttggttgtgtacgtaaatcatgg 24654658  T
Q  175 tcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaagaatcatccttattatga 251  Q
    ||||||||||| ||||| | |||||||||||| ||||| | | |   |||| |||||||| ||||| ||||||||||    
T  24654659 tcccttttattagataacccttatttcatgaccatgtaccgctatcatttcgtaacaaaggatcattcttattatga 24654735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 42841522 - 42841429
Alignment:
Q  137 aatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaac 230  Q
    |||||||||||| ||||| ||||||||| ||||||||||| || ||||||||||||| | |||| ||||||||||| | ||||| |||||||||    
T  42841522 aatctttgaagccatttgaatgcgtacataaatcatggtctctattatttgataatcatgattttatgactatgtaccgcaactatttcttaac 42841429  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 301 - 406
Target Start/End: Complemental strand, 16487450 - 16487345
Alignment:
Q  301 ctctttctggtgagaggtttgagaaaagggtcaacttagattggccaagtgtcaagttagatccaatatatctgcataaagaagagtatggttccggttt 400  Q
    ||||| ||||| ||||||||||||| ||| |||| |||||||||||||||||||| |||||||| ||||||| | || ||   ||||||| ||| |||||    
T  16487450 ctcttgctggtaagaggtttgagaataggatcaaattagattggccaagtgtcaaattagatcctatatatcgggatcaaacggagtatgattctggttt 16487351  T
Q  401 taatat 406  Q
    ||||||    
T  16487350 taatat 16487345  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 42782296 - 42782377
Alignment:
Q  124 aaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 205  Q
    |||||| | |||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||| |||| || ||||||||    
T  42782296 aaattaccgattaaatctttgaagcgatttggatgcgtacgtaaatcatggtcacttctatttgaaaatccttttttcatga 42782377  T

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Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 21698753 - 21698870
Alignment:
Q  134 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaa 233  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||||| |  |||||||||| | | ||||||||||| | ||||  | || | ||||||||||    
T  21698753 ttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtccttactatttgataaccctaatttcatgactttatatcgaacctatctcttaacaaa 21698852  T
Q  234 gaatcatccttattatga 251  Q
    | ||||| ||||||||||    
T  21698853 ggatcattcttattatga 21698870  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 27174408 - 27174351
Alignment:
Q  136 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatc 193  Q
    |||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||    
T  27174408 aaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttatttgaaaatc 27174351  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 40415105 - 40415183
Alignment:
Q  136 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatc 214  Q
    |||||||||||| | |||||||| |||  ||||||||| || |||||||||||||||   |||||||||||||||||||    
T  40415105 aaatctttgaagaggtttggatgtgtatgcaaatcatgatcgcttttatttgataattcatatttcatgactatgtatc 40415183  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 42797219 - 42797141
Alignment:
Q  97 aatgatcttttcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggt 175  Q
    |||||||||||||||| ||||||||  |||||| | ||||||||||||||||||||| |||  ||||  ||||||||||    
T  42797219 aatgatcttttcttctctattctctcaaaattacctattaaatctttgaagcgattttgatatgtacttaaatcatggt 42797141  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 31788657 - 31788702
Alignment:
Q  131 ccattaaatctttgaagcgatttggatgcgtacacaaatcatggtc 176  Q
    |||||||||||||||| ||||||| |||||||| ||||||||||||    
T  31788657 ccattaaatctttgaaacgatttgaatgcgtacgcaaatcatggtc 31788702  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 205
Target Start/End: Original strand, 41227038 - 41227119
Alignment:
Q  124 aaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 205  Q
    |||||| | ||||||||||| ||||||||| ||||| ||   ||||||||||||||| ||||||| |||| || ||||||||    
T  41227038 aaattaccgattaaatctttaaagcgatttcgatgcatatgtaaatcatggtcccttctatttgaaaatccttttttcatga 41227119  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 472
Target Start/End: Original strand, 42777391 - 42777476
Alignment:
Q  387 tatggttccggttttaatattattggttctggtagtgttcatggaactatctgtttgctatgtgcatctcaagaaaatattatatt 472  Q
    |||| ||| |||||| ||||| | |||||||||||||||||||||| | | ||| || | ||||||| | ||||||||||||||||    
T  42777391 tatgtttctggttttgatattttaggttctggtagtgttcatggaattctttgtctggtttgtgcatataaagaaaatattatatt 42777476  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 32031997 - 32032042
Alignment:
Q  131 ccattaaatctttgaagcgatttggatgcgtacacaaatcatggtc 176  Q
    |||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  32031997 ccattaaatctttgaaacgatttgaatgcgtacgcaaattatggtc 32032042  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 16920108 - 16920223
Alignment:
Q  136 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaaga 235  Q
    ||||||||||||||||||||||||||||  ||||||||| || |||| ||||| || ||| |||||||||| ||||||| ||||| |||| |  | || |    
T  16920108 aaatctttgaagcgatttggatgcgtacgtaaatcatgggcctttttgtttgaaaaccttcatttcatgaccatgtatcgcaactatttcctttctaata 16920207  T
Q  236 atcatccttattatga 251  Q
    ||||| ||||||||||    
T  16920208 atcattcttattatga 16920223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 7429930 - 7429892
Alignment:
Q  136 aaatctttgaagcgatttggatgcgtacacaaatcatgg 174  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  7429930 aaatctttgaagcgatttggatgcgtatgcaaatcatgg 7429892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 29353370 - 29353318
Alignment:
Q  136 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttga 188  Q
    |||||||||||||| |||||||||||| | ||| ||||||| || ||||||||    
T  29353370 aaatctttgaagcgttttggatgcgtaaataaaacatggtctctcttatttga 29353318  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 21375317 - 21375219
Alignment:
Q  107 tcttctttattctcttcaaattatccattaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 205  Q
    |||||| |||||| |  ||||||||  |||||||||||||| |||||||||||||  | |||||||||||||| |||||||| ||  ||||||||||||    
T  21375317 tcttctctattctatcgaaattatctcttaaatctttgaagtgatttggatgcgtctataaatcatggtccctcttatttgaaaacatttatttcatga 21375219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 21379382 - 21379311
Alignment:
Q  134 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 205  Q
    |||||||||||||||||||||||||||| |  ||||||||||| || |||||||| ||   |||||||||||    
T  21379382 ttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatga 21379311  T

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Target: scaffold0068 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 15157 - 15040
Alignment:
Q  134 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatgactatgtatcacaactctttcttaacaaa 233  Q
    ||||||||||||||||||||| ||| ||| |||| ||||||||| |  |||||||||| | | ||||||||||| | ||||  | || | ||||||||||    
T  15157 ttaaatctttgaagcgatttgaatgtgtaaacaagtcatggtccttactatttgataaccctaatttcatgactttatatcgaacctatctcttaacaaa 15058  T
Q  234 gaatcatccttattatga 251  Q
    | ||||| ||||||||||    
T  15057 ggatcattcttattatga 15040  T

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Target: scaffold0134 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 17193 - 17122
Alignment:
Q  134 ttaaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttgataatctttatttcatga 205  Q
    |||||||||||||| |||||| ||||||   |||||||||||| || ||| ||||||||  |||||||||||    
T  17193 ttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattgataattcttatttcatga 17122  T

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Target: scaffold0134; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 17013 - 16972
Alignment:
Q  301 ctctttctggtgagaggtttgagaaaagggtcaacttagatt 342  Q
    ||||||||||||||||||||||||| | |||||| |||||||    
T  17013 ctctttctggtgagaggtttgagaataaggtcaaattagatt 16972  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 4027058 - 4027110
Alignment:
Q  136 aaatctttgaagcgatttggatgcgtacacaaatcatggtcccttttatttga 188  Q
    ||||||||||| || |||||||| ||||||||| ||||||| || ||||||||    
T  4027058 aaatctttgaaacgttttggatgtgtacacaaaccatggtctctcttatttga 4027110  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 48742701 - 48742657
Alignment:
Q  303 ctttctggtgagaggtttgagaaaagggtcaacttagattggcca 347  Q
    ||||||||||||| ||||||||| | |||||| ||||||||||||    
T  48742701 ctttctggtgagacgtttgagaataaggtcaaattagattggcca 48742657  T

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