View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7690_low_9 (Length: 361)
Name: NF7690_low_9
Description: NF7690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7690_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 24652967 - 24652616
Alignment:
| Q |
1 |
cagtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgtgaaaaagtcgaa |
100 |
Q |
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| T |
24652967 |
cagtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgtgaaaaagtcgaa |
24652868 |
T |
|
| Q |
101 |
gtcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtgtttagccaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24652867 |
gtcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtgtttagccaaaga |
24652768 |
T |
|
| Q |
201 |
tcactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcctctcctacaatattttcccagccac |
300 |
Q |
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| T |
24652767 |
tcactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcgtctcctacaatattttcccagccac |
24652668 |
T |
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| Q |
301 |
tggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
352 |
Q |
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| T |
24652667 |
tggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
24652616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 34565256 - 34565198
Alignment:
| Q |
87 |
gtgaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagc |
145 |
Q |
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|||||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||| |
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| T |
34565256 |
gtgaaaaagttgaagtcatggtggtgagcgttgagttgcttcaaccacgagtctgcagc |
34565198 |
T |
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