View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_high_14 (Length: 317)
Name: NF7691_high_14
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_high_14 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 3652323 - 3652632
Alignment:
| Q |
1 |
cgtctgcctagttaatcactgccacgtcacctgattactgatgtggcgttgttaattggccaatcacttgaatgactcaacaaaagggcatggaaatgga |
100 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3652323 |
cgtcttcctagttgatcactgccacgtcacctgattactgatgtggcgttgttaattggccaatcacttgaatgactcaacaaaagggcatgagaatgga |
3652422 |
T |
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| Q |
101 |
ccaaaatacccctcctcatctcatatcaatttgaaaagaccattatacccttctcttcatcttcttc-aaaatctggaacactcctattctcttataacc |
199 |
Q |
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||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3652423 |
ccaaaatacccctcctcatctcagattaattcgaaaagaccattatacccttctcttcatcttcttcaaaaatctggaacactcctattctcttataacc |
3652522 |
T |
|
| Q |
200 |
tctcgtctccaccatcacaatcgcaaatcgccgccattctctccatcaccaacacctctcacgtactcccacacacctgcatcatcaccccaattcagtt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652523 |
tctcgtctccaccatcacaatcgcaaatcgccgccattctctccatcaccaacacctctcacgtactcccacacacctgcatcatcaccccaattcagtt |
3652622 |
T |
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| Q |
300 |
tcttcatctc |
309 |
Q |
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|||||||||| |
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| T |
3652623 |
tcttcatctc |
3652632 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 285
Target Start/End: Original strand, 45694653 - 45694742
Alignment:
| Q |
196 |
aacctctcgtctccaccatcacaatcgcaaatcgccgccattctctccatcaccaacacctctcacgtactcccacacacctgcatcatc |
285 |
Q |
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| T |
45694653 |
aacctctcctctccaccgtctgagtcacaaatctccgccgttctctccatcaccaacacctctcacatactcccacgcacctgcatcatc |
45694742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 238378 - 238485
Alignment:
| Q |
12 |
ttaatcactgccacgtcacctgattactgatgtggcgttgttaattggccaatcacttgaatgactcaacaaaagggcatggaaatggaccaaaataccc |
111 |
Q |
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| T |
238378 |
ttaatgactgccacgtcatctgattactgacgtggcgctattaattggcttttcacttgactgactcagcttaagggcatgggaatggacaaaaatgccc |
238477 |
T |
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| Q |
112 |
ctcctcat |
119 |
Q |
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||| |||| |
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| T |
238478 |
ctcttcat |
238485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 34061635 - 34061524
Alignment:
| Q |
10 |
agttaatcactgccacgtcacctgattactgatgtggcgttgttaattggccaatcacttgaatgactcaacaaaagggcatggaaatggaccaaaatac |
109 |
Q |
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||||||||||||||| |||| |||||| |||| |||||| |||||||| | |||||||| ||||||| || ||||||||| ||||||| ||||| | |
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| T |
34061635 |
agttaatcactgccatgtcatctgattgctgacgtggcgctgttaatttggttttcacttgactgactcagcatcagggcatgggaatggacaaaaatgc |
34061536 |
T |
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| Q |
110 |
ccctcctcatct |
121 |
Q |
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||||| |||||| |
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| T |
34061535 |
ccctcttcatct |
34061524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 1179081 - 1179010
Alignment:
| Q |
107 |
tacccctcctcatctcatatcaatttgaaaagaccattatacccttctcttcatcttcttcaaaatctggaac |
179 |
Q |
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| T |
1179081 |
tacccctcctcatctcagaccaatttgaaaagaccaatatacccctc-cttcatctctttcaaaacctggaac |
1179010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 4567078 - 4567165
Alignment:
| Q |
26 |
gtcacctgattactgatgtggcgttgttaattggccaatcacttgaatgactcaacaaaagggcatggaaatggaccaaaatacccct |
113 |
Q |
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| T |
4567078 |
gtcaccagattactgacgtggctctgttaattagctgaccacttgaatgactcggcaaaaggacatgtgaatggacaaaaatacccct |
4567165 |
T |
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