View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7691_high_15 (Length: 313)
Name: NF7691_high_15
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_high_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 39332524 - 39332262
Alignment:
| Q |
14 |
ataaaatcatagtactgtaacactataatagtagactagtagtatcagtcttataggataaataatggcctaattgtctaactgagatcactgattttgt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39332524 |
ataaaatcatagtactgtaacactataatagtagactagtagtatcagtctta--ggataaataatggcctaattgtctaactgagatcactgattttgt |
39332427 |
T |
|
| Q |
114 |
cttgagaagtttaaaatactaaacaaaatataatagaccaattaagttgactttcctagatgctgctcttgttagtccagtggtc-nnnnnnnatttggt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
39332426 |
cttgagaagtttaaaatactaaacaaaatataatagaccaattaagttgactttcctagatgctgcttgtgttagtccagtggtcttttttttatttggt |
39332327 |
T |
|
| Q |
213 |
acaaagaccaagacaatagtctttttattttaagaaaaaatggtataactcactgtctattagta |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39332326 |
acaaagaccaagacaatagtctttttattttaagaaaaaatggtataaatcactgtctattagta |
39332262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 192
Target Start/End: Complemental strand, 39343582 - 39343459
Alignment:
| Q |
67 |
taggataaataatggcctaattgtctaactgagatcactgattttgtcttgagaagtttaaaatactaaacaaaatataatagaccaattaagttgactt |
166 |
Q |
| |
|
||||| ||| ||||| |||||| |||||||| |||| ||||| |||||||||||| ||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
39343582 |
taggaaaaacaatggtctaattacctaactgacatcattgattatgtcttgagaagcttaaaatactaaacaaaatat--ggaaccacttaagttgactt |
39343485 |
T |
|
| Q |
167 |
tcctagatgctgctcttgttagtcca |
192 |
Q |
| |
|
|| ||| | ||||| |||||||||| |
|
|
| T |
39343484 |
tcttaggttctgcttgtgttagtcca |
39343459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 39570201 - 39570277
Alignment:
| Q |
100 |
atcactgattttgtcttgagaagtttaaaatactaaacaaaata--taatagaccaattaagttgactttcctagatgctg |
178 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| | |||||||| |||| || |||||||||||||| ||||||||| |
|
|
| T |
39570201 |
atcattgattttgtcttgagaagtttaaaataccatacaaaatacgtaat----cagttaagttgactttcttagatgctg |
39570277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 39357745 - 39357706
Alignment:
| Q |
206 |
atttggtacaaagaccaagacaatagtctttttattttaa |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
39357745 |
atttggtacaaagaccaatacaatagtctatttattttaa |
39357706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 39357898 - 39357870
Alignment:
| Q |
19 |
atcatagtactgtaacactataatagtag |
47 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
39357898 |
atcatagtactgtaacactataatagtag |
39357870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University