View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_high_16 (Length: 310)
Name: NF7691_high_16
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 3651844 - 3652153
Alignment:
| Q |
1 |
ctccacatgtctgacactgaaatattgtcatcaacataaagataaaaaagacgactgaatctataacacaaatgatctctttctagccaatgatcgttcc |
100 |
Q |
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| T |
3651844 |
ctccacatgtctgacactgaaatattgtcatcaacataaagataaaaaagacgactgaatctataacacaaatgatctctttctagccaatgatcgttcc |
3651943 |
T |
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| Q |
101 |
aaaaggaggtacttttcccataaccaactctatgcactaacccttcttcaaactacaccccctcactcacacctactccctcagaccccataagtcattc |
200 |
Q |
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| T |
3651944 |
aaaaggaggtacttttcccataaccaactctatgcactaacccttcttcaaactacaccccctcactcacacctactccctcagaccccataagtcattc |
3652043 |
T |
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| Q |
201 |
caccaacctggagacttactggttccacacctattttagccccctcaaaatcatacttagttgtcaacactttaaaccacaaccctcgttgatcaacaag |
300 |
Q |
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| T |
3652044 |
caccaacctggagacttactggttccactcctattttagccccctcaaaatcatacttagttgtcaacactttaaaccacaaccatcgttgatcaacaag |
3652143 |
T |
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| Q |
301 |
taacctccaa |
310 |
Q |
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| T |
3652144 |
taacctccaa |
3652153 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 28673516 - 28673572
Alignment:
| Q |
16 |
actgaaatattgtcatcaacataaagataaaaaagacgactgaatctataacacaaa |
72 |
Q |
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| T |
28673516 |
actgaaatattgtcatcaacacaaagatgaaagaggtgactaaatctataacacaaa |
28673572 |
T |
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