View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_high_4 (Length: 538)
Name: NF7691_high_4
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_high_4 |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 502; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 15 - 538
Target Start/End: Complemental strand, 51773112 - 51772592
Alignment:
| Q |
15 |
atgaatgaaatgaatcatgtgcatctgtcataattggtcaatcttgtgtggaaaggtaaaattcagcaagatgttttgtgcttgaggatgatcaatactg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51773112 |
atgaatgaaatgaatcatgtgcatctgtcataattggtcaatcttgtgtggaaaggtaaaattcagca---tgttttgtgcttgaggatgatcaatactg |
51773016 |
T |
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| Q |
115 |
tcgatgaagtccttcttatcaaagacagtgcccaatatctgcaactataatatttatcatctcatttaagttctgtcttataatgtttgtcctcgcaaca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
51773015 |
tcgatgaagtccttcttatcaaagacagtgcccaatatctgcaactataatatttatcatctcatttaagttcagtcttataatgtttgtcctcgcaaca |
51772916 |
T |
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| Q |
215 |
tgaagcttcattccagtccaactatttatattatgcacatatggtggacttttgatattcatctaagcttgagaaattgctttctcgagatagttgaatg |
314 |
Q |
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| T |
51772915 |
tgaagcttcattccagtccaactatttatattatgcacatatggtggacttttgatattcatctaagcttgagaaattgctttctcgagatagttgaatg |
51772816 |
T |
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| Q |
315 |
ttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtacttttgtgttggcttctcaacattttgactttg |
414 |
Q |
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| T |
51772815 |
ttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtacttttgtgttggcttctcaacattttgactttg |
51772716 |
T |
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| Q |
415 |
attcacacacttgatgttctttagtggaatggtaacctgtacatgagacatatacataccattaagaattttaaaaaatcttgatttaaagaaaccgaga |
514 |
Q |
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| T |
51772715 |
attcacacacttgatgttctttagtggaatggtaacctgtacatgagacatatacataccattaagaattttaaaaaatcttgatttagagaaaccgaga |
51772616 |
T |
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| Q |
515 |
gatatgaataggtttgtgtatatt |
538 |
Q |
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| T |
51772615 |
gatatgaataggtttgtgtatatt |
51772592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 281 - 458
Target Start/End: Complemental strand, 51804454 - 51804277
Alignment:
| Q |
281 |
gcttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgt |
380 |
Q |
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| T |
51804454 |
gcttgagaaattgcctgctcgatatatttgaaagttttctgatattttaggacacccataagccagaaatcaaaattgtccattgtgactatgtttatgt |
51804355 |
T |
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| Q |
381 |
acttttgtgttggcttctcaacattttgactttgattcacacacttgatgttctttagtggaatggtaacctgtacat |
458 |
Q |
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| T |
51804354 |
acttttgtgttggcttctcaacattttgactctgcctcacacacttgatcttcttcagtggaatggcaacctgaacat |
51804277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 283 - 446
Target Start/End: Complemental strand, 51808401 - 51808238
Alignment:
| Q |
283 |
ttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtac |
382 |
Q |
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|||||||||||| | ||||||||| ||||| ||||| ||||| || | |||||||||| ||||||||||||| ||| |||| || || ||||||||| |
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| T |
51808401 |
ttgagaaattgcctgctcgagatatttgaaagttttctgatattttagaacacccataagccagaaatcaaaaccgtcttctgtaactatctttatgtac |
51808302 |
T |
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| Q |
383 |
ttttgtgttggcttctcaacattttgactttgattcacacacttgatgttctttagtggaatgg |
446 |
Q |
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| T |
51808301 |
ttttgtgttggcttctcaacattttgactttgattcacacacttgatattcttcagtggaatgg |
51808238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 282 - 428
Target Start/End: Complemental strand, 51780684 - 51780538
Alignment:
| Q |
282 |
cttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgta |
381 |
Q |
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|||| |||||||| | ||||||||| ||||| ||||| ||||| || ||||||||||||| ||||||||| || || |||||||| || || |||||||| |
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| T |
51780684 |
cttgtgaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatcgaagttatccactgtaactatatttatgta |
51780585 |
T |
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| Q |
382 |
cttttgtgttggcttctcaacattttgactttgattcacacacttga |
428 |
Q |
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||| || |||||||||||||||||||||||||| |||||||||||| |
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| T |
51780584 |
cttctgcgttggcttctcaacattttgactttgcctcacacacttga |
51780538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 51790345 - 51790262
Alignment:
| Q |
15 |
atgaatgaaatgaatcatgtgcatctg-tcataattggtcaatcttgtgtggaaaggtaaaattcagcaagatgttttgtgctt |
97 |
Q |
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||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||| |||| | |||||||| ||||||||| |
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| T |
51790345 |
atgaatgaaatgaatcatgtgcatctgtttataattgatcaatcttttgtggaaagactaaatcccgcaagatggtttgtgctt |
51790262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 51768127 - 51768085
Alignment:
| Q |
375 |
ttatgtacttttgtgttggcttctcaacattttgactttgatt |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51768127 |
ttatgtccttttgtgttggcttctcaacattttgactttgatt |
51768085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 51768214 - 51768140
Alignment:
| Q |
269 |
atattcatctaagcttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaac |
343 |
Q |
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|||||||||||| |||||||||| || || |||| ||| ||||| ||||| ||||| || |||||||||| |||| |
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| T |
51768214 |
atattcatctaaacttgagaaatcgccttttcgatatatttgaaagttttctgatatttgaagacacccaaaaac |
51768140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 283 - 428
Target Start/End: Complemental strand, 7327 - 7182
Alignment:
| Q |
283 |
ttgagaaattgctttctcgagatagttgaatgttttatgataattaaagacacccataaaccagaaatcaaaattgtccactgtgacgatgtttatgtac |
382 |
Q |
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|||||||||||| | ||||||||| ||||| ||||| ||||| || ||||||||||||| ||||||||| || || |||||||| || || ||||||||| |
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| T |
7327 |
ttgagaaattgcctgctcgagatatttgaaagttttctgatattttaagacacccataagccagaaatcgaagttatccactgtaactatatttatgtac |
7228 |
T |
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| Q |
383 |
ttttgtgttggcttctcaacattttgactttgattcacacacttga |
428 |
Q |
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|| || |||||||||||||||||||||||||| |||||||||||| |
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| T |
7227 |
ttctgcgttggcttctcaacattttgactttgcctcacacacttga |
7182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 399 - 458
Target Start/End: Original strand, 32908232 - 32908291
Alignment:
| Q |
399 |
caacattttgactttgattcacacacttgatgttctttagtggaatggtaacctgtacat |
458 |
Q |
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| T |
32908232 |
caacattttgactttgattcacacacttgatcttcttaagtgtaatgacaacatgtacat |
32908291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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