View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_low_1 (Length: 770)
Name: NF7691_low_1
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 144 - 722
Target Start/End: Complemental strand, 53173699 - 53173120
Alignment:
| Q |
144 |
cttgtagaacttctgtgtgaccaattcaatataactaaaatcaaaccagttgacgaacatgtgtagtatcacttgagaaaattattaagctgcagtcgaa |
243 |
Q |
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| T |
53173699 |
cttgtagaacttctgtgtgaccaattcaatataactaaaatcaaaccagttgacgaacatgtgtagtatcacttgaaaaaattattaagctgcagtcgaa |
53173600 |
T |
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| Q |
244 |
tatttcatgcagtcacacaaatatatgtcggattaaccgtgcatttcacatttcaccacctcatttgttctcccaaaatgaaacaaactcccctgttttt |
343 |
Q |
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| T |
53173599 |
tatttcatgcagtcacacaaatatatgtcggattaaccgtgcatttcacatttcaccacctcatttgttctcccaaaatgagacaaactcccctgttttt |
53173500 |
T |
|
| Q |
344 |
ggtgnnnnnnnnn-ctccatttactgtcattgaatgaagcttcgatgatatacttcactcataatgaaggcaaactggtgagcttatgtgcaataacttg |
442 |
Q |
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| T |
53173499 |
ggtgaaaaaaaaaactccatttactgtcattgaatgaagcttcgatgatatacttcactcataatgaaggcaaactggtgagcttatgtgcaataacttg |
53173400 |
T |
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| Q |
443 |
ttacaagtcaaatcacaacataaaa-caaaacaatcacttacaatttcaatgctcggtaaaatcaaagtgggcttctttcttggatctgtaactggcttt |
541 |
Q |
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| T |
53173399 |
ttacaagtcaaatcacaacataaaaacaaaacaatcacttgcaatttcaatgctcggtaaaatcaaagtgggcttctttcttggatctgtaactggcttt |
53173300 |
T |
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| Q |
542 |
gacacagcagtttgatggctcttccgcagttgtgggttgcattgacagcagttgaagcagtggggtggtctccgtcaaggagcgatgtgagtgctattgt |
641 |
Q |
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| T |
53173299 |
gacacagcagtttgatggctcttccgcagttgtgggttgcattgacagcagttgaagcagtggggtggtctctgtcaaggagagatgtgagtgctattgt |
53173200 |
T |
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| Q |
642 |
aggtagtgagatggctccacctcggttatgggttatggaagaggacagagaaacatgagctactgcaagagaagagggtga |
722 |
Q |
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| T |
53173199 |
aggtagtga-atggctccacctcggttatgggttatggaagaggacagagaaacatgagctactgcaagagaagagggtga |
53173120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 53173842 - 53173773
Alignment:
| Q |
1 |
gtaaaagaccaaaacttgttgaaccatgattaaccagttcaatttaatttgatcaaactgtaatataact |
70 |
Q |
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| T |
53173842 |
gtaaaagaccaaaacttgttgaaccatgattaaccaattcaatttaatttgatcaaactgtaatacaact |
53173773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 718 - 749
Target Start/End: Complemental strand, 53173113 - 53173082
Alignment:
| Q |
718 |
ggtgacccagtatcgacagaagaagacggaag |
749 |
Q |
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| T |
53173113 |
ggtgacccagtatcgacagaagaagacggaag |
53173082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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