View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7691_low_10 (Length: 424)

Name: NF7691_low_10
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7691_low_10
NF7691_low_10
[»] chr7 (3 HSPs)
chr7 (18-409)||(14999340-14999732)
chr7 (130-355)||(24070785-24071010)
chr7 (115-355)||(11240837-11241077)
[»] chr5 (5 HSPs)
chr5 (115-355)||(19410363-19410605)
chr5 (186-353)||(19568185-19568355)
chr5 (18-110)||(14491800-14491893)
chr5 (136-227)||(14492096-14492187)
chr5 (310-351)||(23278458-23278499)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-282)||(368643-368909)
[»] chr2 (3 HSPs)
chr2 (165-355)||(9959836-9960025)
chr2 (197-355)||(43937239-43937399)
chr2 (18-55)||(9959730-9959767)
[»] chr1 (1 HSPs)
chr1 (166-352)||(3255350-3255542)
[»] chr4 (2 HSPs)
chr4 (115-184)||(20879890-20879960)
chr4 (180-354)||(20880209-20880388)
[»] chr6 (2 HSPs)
chr6 (310-355)||(13250866-13250911)
chr6 (62-102)||(13251124-13251163)
[»] chr3 (1 HSPs)
chr3 (197-273)||(2286736-2286813)
[»] chr8 (1 HSPs)
chr8 (163-256)||(29318539-29318635)
[»] scaffold0300 (1 HSPs)
scaffold0300 (197-250)||(14720-14773)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 14999340 - 14999732
Alignment:
Q  18 tcaaagtttcgcaacggaataaacaacatcttcaaaatcatatcaagtctcaacaacataattcaaatttcggatacatcaaataaattaacaagtttct 117  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14999340 tcaaagtttcgcaatggaataaacaacatcttcaaaatcatataaagtctcaacaacataattcaaatttcggatacatcaaataaattaacaagtttct 14999439  T
Q  118 ccatataattctaacatagaatataaataaaatatctctcaaaa-atcctaatcagagcctagactagcctccaaagcaaaagaaaatggggaagcctca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  14999440 ccatataattctaacatagaatataaataaaatatctctcaaaagatcataatcagagcctagactaaactccaaagcaaaagaaaatggggaagcctca 14999539  T
Q  217 agcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaataacgaggcgacaaaaatcactagagggtaagttt 316  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||    
T  14999540 agcaaatcttcagtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaatgacgaagcgacaaaaatcactagacggtaagttt 14999639  T
Q  317 acattcaacattaagaaactatgaattcaagtatagtatggattttcaaacaaattcttcagcataaagttcaaggccatcattgataattgt 409  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14999640 acattcaacattaagaaactatgaattcaagtatagtatgaattttcaaataaattcttcagcataaagttcaaggccatcattgataattgt 14999732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 130 - 355
Target Start/End: Complemental strand, 24071010 - 24070785
Alignment:
Q  130 aacatagaatataaataaaatatctctcaaaa-atcctaatcagagcctagactagcctccaaagcaaaagaaaatggggaagcctcaagcaaatcctca 228  Q
    |||||||||||||||||||||| |||| |||| |||||||||||||| |||||||| |||||||||| | |||||||  ||| |||||||| |||||||     
T  24071010 aacatagaatataaataaaataactctgaaaagatcctaatcagagcttagactagactccaaagcaca-gaaaatgaagaatcctcaagctaatcctcg 24070912  T
Q  229 gtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaataacgaggcgacaaaaatcactagagggtaagtttacattcaacatt 328  Q
      |||||||||||||||||||||||| |||| ||||||||||| ||||||||||  ||||||| ||||| |||||||||||||||||| |||||||||||    
T  24070911 aaactcactccgtctcaagcgtcctccacctgcacgtctacactattttacaatggcgaggcggcaaaactcactagagggtaagtttccattcaacatt 24070812  T
Q  329 aagaaactatgaattcaagtatagtat 355  Q
    ||||||||| |||||||||||||||||    
T  24070811 aagaaactaagaattcaagtatagtat 24070785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 115 - 355
Target Start/End: Complemental strand, 11241077 - 11240837
Alignment:
Q  115 tctccatataattctaacatagaatataaataaaatatctctcaaaa-atcctaatcagagcctagactagcctccaaagcaaaagaaaatggggaagcc 213  Q
    ||||||||||| || ||||||||||||||| |||| | ||| ||||| ||||||||||||||||||||||| ||| |||||||| ||||||| |||||||    
T  11241077 tctccatataaatccaacatagaatataaacaaaacaactcccaaaagatcctaatcagagcctagactagactcaaaagcaaa-gaaaatgaggaagcc 11240979  T
Q  214 tcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaataacgaggcgacaaaaatcactagagggtaag 313  Q
    |||||| ||||| |  ||||||| ||| |||||||||||||||| |  |||||||||||||||||||||  ||||| ||||||| ||||| |||||||||    
T  11240978 tcaagctaatccccgatactcacgccgactcaagcgtcctcaacttggacgtctacaccattttacaatggcgaggtgacaaaagtcactggagggtaag 11240879  T
Q  314 tttacattcaacattaagaaactatgaattcaagtatagtat 355  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  11240878 tttacattcaacattaagaaactacgaattcaagtacagtat 11240837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 115 - 355
Target Start/End: Complemental strand, 19410605 - 19410363
Alignment:
Q  115 tctccatataattctaacatagaatataaataaaatatctctcaaaa-atcctaatcagagcctagactagcctccaaagcaaaagaaaatggggaagcc 213  Q
    ||||||||||| || | ||||| |||||||||||||| ||| ||||| |||||||||| ||||||||||||  ||||||  ||||||||| | |||||||    
T  19410605 tctccatataaatccagcatagcatataaataaaataactcccaaaagatcctaatcatagcctagactagaatccaaaagaaaagaaaacgaggaagcc 19410506  T
Q  214 tcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgtctacacca-ttttacaataacgaggcgacaaaaatcactagagggtaa 312  Q
    |||||| |||||||   ||||||||| ||||||||||||||||||| ||||||||||||| |||||||||   |||||||||||| ||||| ||||||||    
T  19410505 tcaagctaatcctcgaaactcactccatctcaagcgtcctcaacctgcacgtctacaccatttttacaatggtgaggcgacaaaagtcactggagggtaa 19410406  T
Q  313 gtttacattcaacattaagaaactatgaattcaagtatagtat 355  Q
     ||||||||||||||||||||||||  ||||||||||||||||    
T  19410405 atttacattcaacattaagaaactacaaattcaagtatagtat 19410363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 186 - 353
Target Start/End: Complemental strand, 19568355 - 19568185
Alignment:
Q  186 ctccaaagcaaaagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaataac 285  Q
    |||||||  ||||||||| | ||||||||||||| |  ||||  |||||||  ||||||||||  | ||||||| || |||||||||||||||||||  |    
T  19568355 ctccaaaagaaaagaaaaggaggaagcctcaagctatccctcgatactcacatcgtctcaagcaccttcaacctgcatgtctacaccattttacaatggc 19568256  T
Q  286 gaggcg---acaaaaatcactagagggtaagtttacattcaacattaagaaactatgaattcaagtatagt 353  Q
    |||| |   | || || ||||||||| ||||||||||||||||||||| |||| |  ||||||||||||||    
T  19568255 gaggtggtcaaaacaaccactagaggataagtttacattcaacattaaaaaacaacaaattcaagtatagt 19568185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 14491800 - 14491893
Alignment:
Q  18 tcaaagtttcgcaacggaataaacaacatcttcaaaatcatatcaa-gtctcaacaacataattcaaatttcggatacatcaaataaattaaca 110  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| |||| | || ||||||||||  |  | ||||||||||||||| ||||    
T  14491800 tcaaagtttcgcaacggaataaataacatctccaaaatcatatcaaggtcttagcatcataattcaatctcagaatacatcaaataaatcaaca 14491893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 14492096 - 14492187
Alignment:
Q  136 gaatataaataaaatatctctcaaaa-atcctaatcagagcctagactagcctccaaagcaaaagaaaatggggaagcctcaagcaaatcctc 227  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||| ||| ||||||| | |||||||||  ||||| ||||||| |||||||    
T  14492096 gaatataaataaaataactcccaaaagatcctaataagagcctagaatagactccaaaac-aaagaaaataaggaagtctcaagctaatcctc 14492187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 351
Target Start/End: Complemental strand, 23278499 - 23278458
Alignment:
Q  310 taagtttacattcaacattaagaaactatgaattcaagtata 351  Q
    ||||||||||||||| |||||||||  |||||||||||||||    
T  23278499 taagtttacattcaagattaagaaataatgaattcaagtata 23278458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 368909 - 368643
Alignment:
Q  19 caaagtttcgcaacggaa-taaacaacatcttcaaaatcatatcaa-gtctcaacaacataattcaaatttcggatacatcaaa-taaattaacaagttt 115  Q
    |||||||||||||| ||| |||| ||| ||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||  || | ||||    
T  368909 caaagtttcgcaactgaaataaataacgtctccaaaatcgtatcaatgtctcaacaacataattcaaatctcggatacatcaaaataaaacaatatgttt 368810  T
Q  116 ctccatataattctaacatagaatataaataaaatatctctcaaaaatcctaa-tcagagcc-tagactagcctccaaagcaaaagaaaatggggaagcc 213  Q
    |||||||||  || ||||  |||| ||||||| | | ||| |||||| ||||| |||||||| |||||||| |||||||   ||| ||||||||||||||    
T  368809 ctccatatagatccaaca--gaatgtaaataagacaactcccaaaaaccctaaatcagagccctagactagactccaaaatcaaataaaatggggaagcc 368712  T
Q  214 tcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaat 282  Q
    |||||| |||||||| |||||||  |||||||||||||||    || ||||||||||||||||||||||    
T  368711 tcaagctaatcctcattactcacatcgtctcaagcgtccttgggctgcacgtctacaccattttacaat 368643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 355
Target Start/End: Original strand, 9959836 - 9960025
Alignment:
Q  165 ctaatcagagcctagactagcctccaaagcaaaagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacg 264  Q
    ||||| |||||||||||||   ||||||   |||||||||| ||||||||||||| || |    | ||||||  |||||||||| ||||| |||| ||||    
T  9959836 ctaattagagcctagactataatccaaaagcaaagaaaatgaggaagcctcaagctaaactatggaactcacgtcgtctcaagcatcctctacctgcacg 9959935  T
Q  265 tctacaccattttacaataacgaggcgacaaaaatcactagagggtaagtttacattcaacattaagaaactatgaattcaagtatagtat 355  Q
    ||||||| ||||||||||   || || |||||  ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9959936 tctacacaattttacaatggtgatgcaacaaag-tcacttgaggataagtttacattcaacattaagaaactatgaattcaagtatagtat 9960025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 43937239 - 43937399
Alignment:
Q  197 aagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaataacgaggcgac--a 294  Q
    ||||||||| |||||| |||||| | ||||| |||||||| | | |||||||||||| ||||| ||| ||||||||||||||||||    |||||||  |    
T  43937239 aagaaaatgaggaagcgtcaagctagtcctcggtactcacgcggactcaagcgtccttaacctgcacctctacaccattttacaatggtaaggcgaccaa 43937338  T
Q  295 aaaatcactagagggtaagtttacattcaacattaagaaactatgaattcaagtatagtat 355  Q
    |||| |||| || |||||| ||||||||||||| ||||||||| ||  ||||| |||||||    
T  43937339 aaaaccactggatggtaagattacattcaacataaagaaactacgatctcaagcatagtat 43937399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 9959730 - 9959767
Alignment:
Q  18 tcaaagtttcgcaacggaataaacaacatcttcaaaat 55  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  9959730 tcaaagtttcgcaacagaataaacaatatcttcaaaat 9959767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 166 - 352
Target Start/End: Original strand, 3255350 - 3255542
Alignment:
Q  166 taatcagagcctagactagcctccaaagcaaaagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgt 265  Q
    ||||||||||||||||||| |||||||   |||| ||||| ||||||||||||| || ||||  |||||||   |||||||||||||||||  | |||||    
T  3255350 taatcagagcctagactagactccaaaaacaaaggaaatgaggaagcctcaagctaaacctcgatactcacattgtctcaagcgtcctcaatatgcacgt 3255449  T
Q  266 ctacaccattttacaataacgaggcg----ac--aaaaatcactagagggtaagtttacattcaacattaagaaactatgaattcaagtatag 352  Q
    || |||||||||| || || ||||||    ||  || || |||   ||||||||||||||||||||||||||||| |||||||||||||||||    
T  3255450 cttcaccattttaaaacaatgaggcggtcaaccaaacaaccaccgaagggtaagtttacattcaacattaagaaattatgaattcaagtatag 3255542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 20879890 - 20879960
Alignment:
Q  115 tctccatataattctaacatagaatataaataaaatatctctcaaaa-atcctaatcagagcctagactag 184  Q
    |||||||||||||| ||||||| ||||||||||||||   ||||||| ||||||||||||| |||||||||    
T  20879890 tctccatataattccaacatagcatataaataaaataatactcaaaatatcctaatcagagtctagactag 20879960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 354
Target Start/End: Original strand, 20880209 - 20880388
Alignment:
Q  180 actagcctccaaagcaaaagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgtcctcaacctacacgtctacaccatttt-a 278  Q
    ||||| |||||||||||| ||||||| |||||||| |||| |||||||  ||||||  || ||||||||||| || || |  |||||||||||||||| |    
T  20880209 actagactccaaagcaaa-gaaaatgaggaagccttaagctaatcctcgatactcataccatctcaagcgtc-tccacatgtacgtctacaccattttta 20880306  T
Q  279 caataacgaggcga-----caaa-aatcactagagggtaagtttacattcaacattaagaaactatgaattcaagtatagta 354  Q
    ||||   ||||||      |||| || |||| |||| ||| |||||| | ||||||||||||||||||||||||||||||||    
T  20880307 caatggtgaggcggtcaaccaaacaaccactggaggataaatttacaattaacattaagaaactatgaattcaagtatagta 20880388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 13250911 - 13250866
Alignment:
Q  310 taagtttacattcaacattaagaaactatgaattcaagtatagtat 355  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||    
T  13250911 taagtttacattaaacattaagaaactatgaattcaagtatggtat 13250866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 13251163 - 13251124
Alignment:
Q  62 aagtctcaacaacataattcaaatttcggatacatcaaata 102  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  13251163 aagtctcaacaacataattc-aatctcggatacatcaaata 13251124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 2286813 - 2286736
Alignment:
Q  197 aagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgtcctcaa-cctacacgtctacacca 273  Q
    ||||||||| |||||| |||||| ||||||  |||||||| |||||||||||||| |||| | | |||||||||||||    
T  2286813 aagaaaatgaggaagcgtcaagctaatccttggtactcacgccgtctcaagcgtcttcaatcatgcacgtctacacca 2286736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 29318539 - 29318635
Alignment:
Q  163 tcctaatcagagcctagact-agcctccaaa-gcaa-aagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgtcctcaa 256  Q
    |||||||||||||||| | | || ||||||| |||| ||||||||| |||||| |||||  |||||||||||||||  |||||||||||||| ||||    
T  29318539 tcctaatcagagcctacaattagactccaaaagcaacaagaaaatgaggaagcgtcaagttaatcctcagtactcatgccgtctcaagcgtcatcaa 29318635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 14773 - 14720
Alignment:
Q  197 aagaaaatggggaagcctcaagcaaatcctcagtactcactccgtctcaagcgt 250  Q
    ||||||||| |||||| |||||| | ||||| |||||||| |||||||||||||    
T  14773 aagaaaatgaggaagcgtcaagctagtcctctgtactcacgccgtctcaagcgt 14720  T

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