View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7691_low_12 (Length: 397)

Name: NF7691_low_12
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7691_low_12
NF7691_low_12
[»] chr8 (12 HSPs)
chr8 (1-123)||(14791467-14791589)
chr8 (1-123)||(14790672-14790795)
chr8 (1-124)||(20112290-20112412)
chr8 (1-123)||(20111492-20111613)
chr8 (1-42)||(45105524-45105565)
chr8 (4-102)||(11680191-11680289)
chr8 (63-103)||(35123256-35123296)
chr8 (4-103)||(767600-767699)
chr8 (4-103)||(32672310-32672409)
chr8 (4-103)||(35124621-35124720)
chr8 (63-103)||(14864992-14865032)
chr8 (63-103)||(14866162-14866202)
[»] chr5 (14 HSPs)
chr5 (1-123)||(5348519-5348641)
chr5 (1-112)||(36429294-36429404)
chr5 (1-123)||(5347723-5347846)
chr5 (1-123)||(31808277-31808399)
chr5 (1-100)||(36681864-36681961)
chr5 (68-123)||(36430117-36430172)
chr5 (1-45)||(36430079-36430123)
chr5 (1-123)||(7491248-7491373)
chr5 (68-129)||(17640347-17640408)
chr5 (4-103)||(19897412-19897511)
chr5 (1-39)||(29500093-29500131)
chr5 (7-45)||(33136607-33136645)
chr5 (63-103)||(17641770-17641810)
chr5 (63-103)||(34088595-34088635)
[»] chr4 (18 HSPs)
chr4 (1-123)||(621549-621671)
chr4 (1-123)||(620470-620592)
chr4 (292-382)||(24963456-24963546)
chr4 (124-217)||(24963622-24963712)
chr4 (1-124)||(27454916-27455038)
chr4 (1-98)||(11147770-11147867)
chr4 (11-103)||(23102304-23102396)
chr4 (68-123)||(27455765-27455820)
chr4 (1-123)||(49681264-49681384)
chr4 (1-45)||(27455727-27455771)
chr4 (4-125)||(50664417-50664538)
chr4 (4-103)||(2613651-2613750)
chr4 (4-103)||(16506889-16506988)
chr4 (4-103)||(16508138-16508237)
chr4 (1-39)||(31632464-31632502)
chr4 (4-103)||(50663015-50663114)
chr4 (54-102)||(21225819-21225867)
chr4 (63-103)||(52897768-52897808)
[»] chr3 (18 HSPs)
chr3 (1-123)||(1576486-1576608)
chr3 (1-123)||(54560830-54560952)
chr3 (1-123)||(1577524-1577645)
chr3 (1-123)||(47471489-47471611)
chr3 (1-123)||(50837460-50837581)
chr3 (1-123)||(50838272-50838394)
chr3 (1-123)||(54560033-54560156)
chr3 (1-118)||(43546371-43546488)
chr3 (1-101)||(50382753-50382853)
chr3 (53-126)||(31800429-31800502)
chr3 (1-98)||(35942790-35942887)
chr3 (1-42)||(50381933-50381974)
chr3 (1-45)||(47470772-47470816)
chr3 (68-103)||(47470743-47470778)
chr3 (4-103)||(49725982-49726081)
chr3 (4-103)||(52946386-52946485)
chr3 (63-103)||(1136260-1136300)
chr3 (63-123)||(43643841-43643901)
[»] chr6 (12 HSPs)
chr6 (1-123)||(17732015-17732137)
chr6 (1-123)||(15348210-15348331)
chr6 (1-123)||(6008641-6008763)
chr6 (1-123)||(30710292-30710413)
chr6 (1-123)||(15347432-15347555)
chr6 (1-123)||(17732829-17732951)
chr6 (53-123)||(30709491-30709561)
chr6 (1-118)||(6009441-6009558)
chr6 (4-129)||(10917853-10917978)
chr6 (4-103)||(4137675-4137774)
chr6 (63-128)||(4138969-4139034)
chr6 (63-103)||(1387646-1387686)
[»] chr1 (12 HSPs)
chr1 (3-124)||(47444987-47445108)
chr1 (1-123)||(47445788-47445912)
chr1 (1-102)||(27585312-27585411)
chr1 (1-123)||(36475984-36476106)
chr1 (4-101)||(11341991-11342088)
chr1 (4-101)||(11500010-11500107)
chr1 (4-103)||(11343350-11343449)
chr1 (4-103)||(11501370-11501469)
chr1 (63-103)||(14282800-14282840)
chr1 (63-103)||(14284248-14284288)
chr1 (63-103)||(16420137-16420177)
chr1 (63-103)||(38482521-38482561)
[»] chr7 (10 HSPs)
chr7 (1-101)||(36068120-36068220)
chr7 (1-123)||(3987250-3987371)
chr7 (2-100)||(30480710-30480808)
chr7 (1-123)||(32390904-32391024)
chr7 (1-124)||(6733016-6733138)
chr7 (57-123)||(36067296-36067362)
chr7 (54-123)||(6733203-6733272)
chr7 (4-103)||(31285490-31285589)
chr7 (4-45)||(29721078-29721119)
chr7 (63-103)||(31286920-31286960)
[»] chr2 (8 HSPs)
chr2 (1-103)||(4593417-4593518)
chr2 (1-123)||(4592627-4592750)
chr2 (1-100)||(10256503-10256601)
chr2 (8-101)||(45114913-45115006)
chr2 (12-103)||(22539136-22539226)
chr2 (4-103)||(39618048-39618146)
chr2 (63-102)||(39619328-39619367)
chr2 (1-41)||(10255751-10255791)
[»] scaffold0102 (2 HSPs)
scaffold0102 (1-123)||(33157-33280)
scaffold0102 (1-123)||(32351-32474)
[»] scaffold0020 (1 HSPs)
scaffold0020 (5-45)||(2025-2065)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 14791467 - 14791589
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14791467 acaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 14791566  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||||||| |||||||||    
T  14791567 ggggggtttttgcctatttactc 14791589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 14790795 - 14790672
Alignment:
Q  1 acaaacgga-ggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc 99  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||       |||||||| |||||||||||||| ||||||||||||| |||||||||    
T  14790795 acaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttc 14790696  T
Q  100 agggaggtttttgcttatttactc 123  Q
    |||| | ||||||| |||||||||    
T  14790695 agggggttttttgcctatttactc 14790672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 20112290 - 20112412
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||| |||||||||||||||||  |||||||| ||       |||||||| |||||||||||||  ||||| ||||||| ||||||||||    
T  20112290 acaaacggaggggg-taattgactaacgtttgataatttcagtggggtttttgaagtttcttaaaaatcaggggttttttttacgaaagttacaatttca 20112388  T
Q  101 gggaggtttttgcttatttactcc 124  Q
    | | ||||||||| |||| |||||    
T  20112389 gaggggtttttgcctattcactcc 20112412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 20111613 - 20111492
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc- 99  Q
    |||||||||||||||||||||||||| ||||| |||||| ||| |       ||| |||||||||||| ||||||  |||||||||||||||||||| |     
T  20111613 acaaacggaggggggtaattgactaatgtttgacaattttaggaggatttttgaaatttcctaaaaattaggggg--ttttgacgaaagctacaattaca 20111516  T
Q  100 agggaggtttttgcttatttactc 123  Q
    ||||  |||||||| |||||||||    
T  20111515 aggggagtttttgcctatttactc 20111492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45105565 - 45105524
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcag 42  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  45105565 acaaacggaggggggtaattgactaacgtttgacaatttcag 45105524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 11680289 - 11680191
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcagg 102  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||||||||||||||||| ||||||||||||    
T  11680289 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcagggggatttttgacgaaagttacaatttcagg 11680191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 35123296 - 35123256
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  35123296 aaaattcagggggatttttgacgaaagttacaatttcaggg 35123256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 767600 - 767699
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  767600 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 767699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 32672409 - 32672310
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  32672409 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 32672310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 35124621 - 35124720
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  35124621 aacggaggggggtaattgacagacgcttgacaatttcagggggatttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 35124720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 14865032 - 14864992
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  14865032 aaaattcaggggggtttttgacgaaagttacaatttcaggg 14864992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 14866162 - 14866202
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||||||||||| ||||| |||||||||||||    
T  14866162 aaaattcagggggatttttgaagaaagttacaatttcaggg 14866202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 5348519 - 5348641
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5348519 acaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 5348618  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||||||| |||||||||    
T  5348619 ggggggtttttgcctatttactc 5348641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 36429404 - 36429294
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||| |||||||  |||||||||||       |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  36429404 acaaacggaggggggtaattgactgacgtttgataatttcaggggcgtttttgaagtttcttaaaaatcagggggatttttgacgaaagttacaatttca 36429305  T
Q  101 gggaggtttttg 112  Q
    ||| ||||||||    
T  36429304 ggg-ggtttttg 36429294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 5347846 - 5347723
Alignment:
Q  1 acaaacgga-ggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc 99  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||       |||||||| |||||||||||||| ||||||||||||| |||||||||    
T  5347846 acaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttc 5347747  T
Q  100 agggaggtttttgcttatttactc 123  Q
    || | ||||||||| |||| ||||    
T  5347746 agaggggtttttgcctattcactc 5347723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 31808399 - 31808277
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||| ||||||||||||||||||||||||  |||||||||| |       |||||||| ||||||||||||  |||||||||||||| ||||| ||||    
T  31808399 acaaactgaggggggtaattgactaacgtttaacaatttcaggagagtttttgaagtttcttaaaaatcagggaaatttttgacgaaagttacaaattca 31808300  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||||| ||||||| |||| ||||    
T  31808299 gggagatttttgcctattcactc 31808277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36681864 - 36681961
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||| |||||||| |||       |||||||  |||||||||||||||||||| ||||||| ||||||||||    
T  36681864 acaaacggaggggggtaattgactaacgtttgacaatttcatggg--ggtttgaagttttttaaaaatcagggggatttttaacgaaagttacaatttca 36681961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 36430117 - 36430172
Alignment:
Q  68 tcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactc 123  Q
    |||||||| |||||||||||||||||||||||| || ||||||||| |||||||||    
T  36430117 tcaggggggtttttgacgaaagctacaatttcaagggggtttttgcctatttactc 36430172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36430079 - 36430123
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcagggg 45  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  36430079 acaaacggatgggggtaattgactaacgtttggcaatttcagggg 36430123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 7491373 - 7491248
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcagggg---nnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatt 97  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||           ||||||| ||||| |||||| ||||||||||||||| |||||||    
T  7491373 acaaacgaaggggggtaattgactaacgtttcacaatttcaggggtttttttttttaagtttcttaaaagtcagggtgatttttgacgaaagttacaatt 7491274  T
Q  98 tcagggaggtttttgcttatttactc 123  Q
    | |||  ||| ||||| |||| ||||    
T  7491273 ttaggagggtgtttgcctattcactc 7491248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 17640408 - 17640347
Alignment:
Q  68 tcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactccataaa 129  Q
    |||||||||||||||||||||| ||||||||||||| |||  |||  ||||||||| |||||    
T  17640408 tcagggggatttttgacgaaagttacaatttcaggggggtaattgactatttactcaataaa 17640347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 19897511 - 19897412
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  19897511 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttacaaaattcaggggggtttttgacgaaagttacaatttcaggg 19897412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 29500131 - 29500093
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaattt 39  Q
    |||||||||| ||||||||||||||||||||| ||||||    
T  29500131 acaaacggagaggggtaattgactaacgtttgacaattt 29500093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 33136607 - 33136645
Alignment:
Q  7 ggaggggggtaattgactaacgtttgtcaatttcagggg 45  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  33136607 ggaggggggtaattgactaacgtttaacaatttcagggg 33136645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 17641770 - 17641810
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  17641770 aaaattcaggggggtttttgacgaaagttacaatttcaggg 17641810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 34088635 - 34088595
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  34088635 aaaattcaggggggtttttgacgaaagttacaatttcaggg 34088595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 621549 - 621671
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  621549 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 621648  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||||||| |||||||||    
T  621649 ggggggtttttgcctatttactc 621671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 620592 - 620470
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||| |||||||||||    
T  620592 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcagggggatttttgacgaaaactacaatttca 620493  T
Q  101 gggaggtttttgcttatttactc 123  Q
    | | ||||||||| |||||||||    
T  620492 gaggggtttttgcctatttactc 620470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 292 - 382
Target Start/End: Complemental strand, 24963546 - 24963456
Alignment:
Q  292 gacttgtctaaaaatttgtcataaaattattatacaattatcacttcttctaaaatatacttttacaaattagaaaacttgaggtaatttt 382  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24963546 gacttttctaaaaatttgtcataaaattattatacaattgtcacttcttctaaaatatacttttacaaattagaaaacttgaggtaatttt 24963456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 217
Target Start/End: Complemental strand, 24963712 - 24963622
Alignment:
Q  124 cataaatttctaagcctaggactgtttaaaacgtgaaatgttatttcaacaattattattgaaataatttacggaggaacaactaaagatatat 217  Q
    |||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||||||||||||||| |||||||||||    
T  24963712 cataaatttctaagcctaggactgtttaaaacgtgacatgttattt---caattattattgaaataatttacggaggaacaagtaaagatatat 24963622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 27455038 - 27454916
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||| |||||||  |||||||  ||        ||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  27455038 acaaacggaggggggtaattgactgacgtttgataatttcaaaggggtttttcaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttca 27454939  T
Q  101 gggaggtttttgcttatttactcc 124  Q
    ||| ||||||||| |||| |||||    
T  27454938 ggg-ggtttttgcctattcactcc 27454916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11147867 - 11147770
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaattt 98  Q
    |||||||||||||||||||||||||||||||| |||||||| |||       |||||||| ||||| ||||    |||||||||||| ||||||||||    
T  11147867 acaaacggaggggggtaattgactaacgtttgacaatttcaagggaatttttgaagtttcttaaaagtcagatttatttttgacgaatgctacaattt 11147770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 23102304 - 23102396
Alignment:
Q  11 gggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||| |||| ||| ||||||||||||       |||||||   |||| |||||||| |||||||||||||||||||||||||||    
T  23102304 gggggtaattgacaaacgcttgacaatttcaggggggtatttgaagttttgcaaaattcaggggggtttttgacgaaagctacaatttcaggg 23102396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 27455765 - 27455820
Alignment:
Q  68 tcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactc 123  Q
    |||||||| |||||||||||||||||||||||| || ||||||||| |||||||||    
T  27455765 tcaggggggtttttgacgaaagctacaatttcaagggggtttttgcctatttactc 27455820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 49681384 - 49681264
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||  ||||| |||| |||||| ||||||||| ||       ||||||| ||||||||||||||  |||||||| ||||||||||||| |    
T  49681384 acaaacggagggga-taattaactagcgtttgacaatttcagaggggtttttgaagttttctaaaaatcaggggagtttttgacaaaagctacaattt-a 49681287  T
Q  101 gggaggtttttgcttatttactc 123  Q
    |||  |||||||| |||||||||    
T  49681286 ggggagtttttgcctatttactc 49681264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27455727 - 27455771
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcagggg 45  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||    
T  27455727 acaaacggaggggggtaattgactaacatttggcaatttcagggg 27455771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 50664417 - 50664538
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  50664417 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 50664516  T
Q  104 aggtttttgcttatttactcca 125  Q
     |||  |||  |||||||||||    
T  50664517 gggtaattgactatttactcca 50664538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 2613750 - 2613651
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  2613750 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 2613651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 16506988 - 16506889
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  16506988 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcagggggttttttgacgaaagttacaatttcaggg 16506889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 16508138 - 16508237
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  16508138 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 16508237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31632502 - 31632464
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaattt 39  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  31632502 acaaacggaggggggcaattgactaacgtttgacaattt 31632464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 50663114 - 50663015
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  50663114 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 50663015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 21225867 - 21225819
Alignment:
Q  54 aagtttcctaaaaatcagggggatttttgacgaaagctacaatttcagg 102  Q
    ||||||| ||||||||| |  ||||||||||||||| ||||||||||||    
T  21225867 aagtttcttaaaaatcaagaagatttttgacgaaagttacaatttcagg 21225819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 52897768 - 52897808
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  52897768 aaaattcaggggggtttttgacgaaagttacaatttcaggg 52897808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 1576608 - 1576486
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1576608 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggggtttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 1576509  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||||||| |||||||||    
T  1576508 ggggggtttttgcctatttactc 1576486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 54560830 - 54560952
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54560830 acaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 54560929  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||||||| |||||||||    
T  54560930 ggggggtttttgcctatttactc 54560952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 1577524 - 1577645
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1577524 acaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttt-gaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 1577622  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||||||  |||||||||    
T  1577623 ggggggtttttgactatttactc 1577645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 47471489 - 47471611
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||  |||||||||||||||||||||||    
T  47471489 acaaacagaggggggtaattgactaacgtttggcaatttcaggggggtttttgaagtttcctaaaaatcagggggggttttgacgaaagctacaatttca 47471588  T
Q  101 gggaggtttttgcttatttactc 123  Q
     || | ||||||| |||||||||    
T  47471589 aggggttttttgcctatttactc 47471611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 50837581 - 50837460
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||| ||| ||||||||||||||| ||||||||||||| ||||||||||    
T  50837581 acaaacggaggggggtaattgactaacgtttgtcaatttcagggg-gtttttgaaattttctaaaaatcaggggggtttttgacgaaagttacaatttca 50837483  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| | ||||||| |||| ||||    
T  50837482 gggggatttttgcctattcactc 50837460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 50838272 - 50838394
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||       |||||||| ||||||| |||||| ||||||||||||| ||||||||||    
T  50838272 acaaacggaggggggtaattgactaacgtttgataatttcaggggagtttttgaagtttcttaaaaattaggggggtttttgacgaaagttacaatttca 50838371  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| | ||||||| |||| ||||    
T  50838372 gggggatttttgcctattcactc 50838394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 54560156 - 54560033
Alignment:
Q  1 acaaacgga-ggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc 99  Q
    ||||||||| |||||||||||||||||||||||  ||||||| |||       |||||||| |||||||||||||| ||||||||||||| |||||||||    
T  54560156 acaaacggaaggggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttc 54560057  T
Q  100 agggaggtttttgcttatttactc 123  Q
    |||| ||||||||| |||| ||||    
T  54560056 aggggggtttttgcctattcactc 54560033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 43546488 - 43546371
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||       |||||||| |||||||||||  ||||||||||||||| ||||||||||    
T  43546488 acaaacggaggggggtaattgactgacgtttgataatttcagaggggtttttgaagtttcttaaaaatcaggaagatttttgacgaaagttacaatttca 43546389  T
Q  101 gggaggtttttgcttatt 118  Q
    | |  |||||||| ||||    
T  43546388 gaggagtttttgcctatt 43546371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 50382753 - 50382853
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||| |||||||||||||||||||||||| | |||||| |||       |||||||| ||||| |||||||  ||||||||||||| ||| ||||||    
T  50382753 acaaacgaaggggggtaattgactaacgtttgaccatttcatgggggtgtttgaagtttcttaaaagtcaggggagtttttgacgaaagttacgatttca 50382852  T
Q  101 g 101  Q
    |    
T  50382853 g 50382853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 31800429 - 31800502
Alignment:
Q  53 gaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactccat 126  Q
    |||||||| ||||||||| |||  ||||||||||||| ||||||||| |||  |||||||| |||| |||||||    
T  31800429 gaagtttcttaaaaatcatgggattttttgacgaaagttacaatttcgggggagtttttgcctattcactccat 31800502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 35942790 - 35942887
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttc-aggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaattt 98  Q
    ||||| |||||||||||||||||||||||||  ||||||| |||||       |||||||| ||||| ||| |||||||||||||||||  ||||||||    
T  35942790 acaaatggaggggggtaattgactaacgtttaacaatttcaaggggtttttttgaagtttcataaaagtca-ggggatttttgacgaaaattacaattt 35942887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50381974 - 50381933
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcag 42  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  50381974 acaaacagaggggggtaattgactaacgtttgacaatttcag 50381933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47470816 - 47470772
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcagggg 45  Q
    |||||||||||||||||||||||| |||||||  |||||||||||    
T  47470816 acaaacggaggggggtaattgactgacgtttgataatttcagggg 47470772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 47470778 - 47470743
Alignment:
Q  68 tcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||||||||||||||||||||| |||||||||||||    
T  47470778 tcagggggatttttgacgaaagttacaatttcaggg 47470743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 49725982 - 49726081
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  49725982 aacggaggggggtaattgacagacgcttgacaatttcagggggatttttgacattttacaaaattcaggggggtttttgacgaaagttacaatttcaggg 49726081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 52946485 - 52946386
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  52946485 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 52946386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 1136300 - 1136260
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  1136300 aaaattcaggggggtttttgacgaaagttacaatttcaggg 1136260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 43643841 - 43643901
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactc 123  Q
    |||| ||||| ||||||||||| |||||||||||||||| | |||  ||| ||||||||||    
T  43643841 aaaattcaggaggatttttgacaaaagctacaatttcagaggggtaattgattatttactc 43643901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 17732137 - 17732015
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  17732137 acaaacggaggggggtaattgactaacgtttgtcaatttcagggggttttttgaaattttctaaaaatcagggggatttttgacgaaaactacaatttca 17732038  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||||||| |||||||||    
T  17732037 ggggggtttttgcctatttactc 17732015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 15348210 - 15348331
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||||||||    
T  15348210 acaaacggaagggggtaattgactaacgtttgtcaatttcagggggttttttgaagtttcctaaaaatca-ggggatttttgacgaaagctacaatttca 15348308  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| ||||| ||| |||||||||    
T  15348309 ggggggtttctgcctatttactc 15348331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 6008763 - 6008641
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  6008763 acaaatggaggggggtgattgactaacgtttgtcaatttcagggggctttttgaagtttcctaaaaatcagggaggtttttgacgaaagctacaatttca 6008664  T
Q  101 gggaggtttttgcttatttactc 123  Q
    |||   ||||||| |||||||||    
T  6008663 ggggtttttttgcctatttactc 6008641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 30710292 - 30710413
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||| || |||||||||||||||||||||| ||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30710292 acaaacagatgggggtaattgactaacgtttggcaatttcagggggttttt-gaagtttcctaaaaatcaggggggtttttgacgaaagctacaatttca 30710390  T
Q  101 gggaggtttttgcttatttactc 123  Q
     || ||||||||| |||||||||    
T  30710391 agggggtttttgcctatttactc 30710413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 15347555 - 15347432
Alignment:
Q  1 acaaacgga-ggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc 99  Q
    ||||||||| |||||||||||||||||||||||  |||||||||||       |||||||| |||||||||||||| ||||||||||||| |||||||||    
T  15347555 acaaacggaaggggggtaattgactaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttc 15347456  T
Q  100 agggaggtttttgcttatttactc 123  Q
    |||| ||||||||| |||||||||    
T  15347455 aggggggtttttgcctatttactc 15347432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 17732829 - 17732951
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||       |||||||| |||||||||||||| ||||||||||||| ||||||||||    
T  17732829 acaaacggaggggggtaattggctaacgtttgataatttcaggggggtttttgaagtttcttaaaaatcagggggttttttgacgaaagttacaatttca 17732928  T
Q  101 gggaggtttttgcttatttactc 123  Q
     || || |||||| |||| ||||    
T  17732929 aggggggttttgcctattcactc 17732951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 30709561 - 30709491
Alignment:
Q  53 gaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactc 123  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||| | ||||||||| |||| ||||    
T  30709561 gaagtttcttaaaaatcagggggatttttgacgaaagttacaatttcagaggggtttttgcctattcactc 30709491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6009441 - 6009558
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||| ||| |||||||||||||||||  |||||||||||       |||||||| |||||||||||    ||||||||||||| || |||||||    
T  6009441 acaaacggagagggataattgactaacgtttgataatttcaggggagtttttgaagtttcttaaaaatcaggaaagtttttgacgaaagttataatttca 6009540  T
Q  101 gggaggtttttgcttatt 118  Q
     || ||||||||| ||||    
T  6009541 agggggtttttgcctatt 6009558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 10917978 - 10917853
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  10917978 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 10917879  T
Q  104 aggtttttgcttatttactccataaa 129  Q
     |||  |||  ||||||||| |||||    
T  10917878 gggtgattgactatttactctataaa 10917853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 4137774 - 4137675
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  4137774 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttacaaaattcaggggggtttttgacgaaagttacaatttcaggg 4137675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 4138969 - 4139034
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactccataa 128  Q
    |||| |||||||| ||||||||||||| ||||||||||||| |||  |||  ||||||||| ||||    
T  4138969 aaaattcaggggggtttttgacgaaagttacaatttcaggggggtaattgactatttactcgataa 4139034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 1387646 - 1387686
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  1387646 aaaattcaggggggtttttgacgaaagttacaatttcaggg 1387686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 47445108 - 47444987
Alignment:
Q  3 aaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcagg 102  Q
    |||||||||||||||||||||||||||||| |||||||| |||       |||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  47445108 aaacggaggggggtaattgactaacgtttgacaatttcatgggggtttttgaagtttcctgaaaatcagggggggttttgacgaaagctacaatttcagg 47445009  T
Q  103 gaggtttttgcttatttactcc 124  Q
    | | ||||||  ||||||||||    
T  47445008 gggttttttggctatttactcc 47444987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 47445788 - 47445912
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatca-gggggatttttgacgaaagctacaatttc 99  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||       |||||||| ||||||||| ||||||||||||| ||||  |||||||||    
T  47445788 acaaatggaggggggtaattgactaacgtttgataatttcaggggtttttttgaagtttcttaaaaatcaggggggatttttgatgaaaattacaatttc 47445887  T
Q  100 ag-ggaggtttttgcttatttactc 123  Q
    || || ||||||||| |||| ||||    
T  47445888 agagggggtttttgcctattcactc 47445912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 27585411 - 27585312
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||| | ||||||||| |||||||||||| ||||||||||||       |||||||| |||||||  ||||||||||||||||||| ||||||||||    
T  27585411 acaaacgaatgggggtaatcgactaacgtttgacaatttcagggggttttt-gaagtttcttaaaaatt-gggggatttttgacgaaaggtacaatttca 27585314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 36475984 - 36476106
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||| |||||||||||||||||||||||||  |||||||| |||       |||||||| ||||| | ||   |  |||||||||||| ||||||||||    
T  36475984 acaaatggaggggggtaattgactaacgtttaacaatttcatgggggtttttgaagtttcttaaaagttagatagggttttgacgaaagttacaatttca 36476083  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||  ||||||||| |||| ||||    
T  36476084 ggagggtttttgcctattcactc 36476106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 11342088 - 11341991
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcag 101  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||||||||||||||||| |||||||||||    
T  11342088 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcagggggatttttgacgaaagttacaatttcag 11341991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 11500107 - 11500010
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcag 101  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||||||||||||||||| |||||||||||    
T  11500107 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcagggggatttttgacgaaagttacaatttcag 11500010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 11343350 - 11343449
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  11343350 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 11343449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 11501370 - 11501469
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  11501370 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 11501469  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 14282840 - 14282800
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  14282840 aaaattcaggggggtttttgacgaaagttacaatttcaggg 14282800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 14284248 - 14284288
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  14284248 aaaattcaggggggtttttgacgaaagttacaatttcaggg 14284288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 16420177 - 16420137
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  16420177 aaaattcagggggatttttaacgaaagttacaatttcaggg 16420137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 38482521 - 38482561
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  38482521 aaaattcaggggggtttttgacgaaagttacaatttcaggg 38482561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 36068120 - 36068220
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||       ||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  36068120 acaaacggaggggggtaattgactaacatttgacaatttcagggggttttttgaaatttcctaaaaatcagggggttttttgacgaaagctacaatttca 36068219  T
Q  101 g 101  Q
    |    
T  36068220 g 36068220  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 3987250 - 3987371
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||| ||||||||||||||||| |||||||| ||         ||||||| ||||||||||| |||||||||||||||| ||||||||||    
T  3987250 acaaacggaggggg-taattgactaacgtttgacaatttcaaggtttttttttaagtttcttaaaaatcaggaggatttttgacgaaagttacaatttca 3987348  T
Q  101 gggaggtttttgcttatttactc 123  Q
    ||| | ||||||| |||| ||||    
T  3987349 gggggctttttgcctattcactc 3987371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 30480710 - 30480808
Alignment:
Q  2 caaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||       ||||| || ||||||||| ||| |||||| ||||||| ||||||||||    
T  30480710 caaacggagggggataattgactaacgtttgacaatttcaagggattttttgaagtatcttaaaaatcaagggaattttttacgaaagttacaatttca 30480808  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 32390904 - 32391024
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||       |||||||| ||||  ||||||||  |||||||||| |||||||||||     
T  32390904 acaaacggaggggggtaattgactaacgtttgataatttcagggg-atttttgaagtttcttaaatgtcaggggg-gttttgacgaatgctacaatttcg 32391001  T
Q  101 gggaggtttttgcttatttactc 123  Q
    |||   ||||||| |||||||||    
T  32391002 gggttttttttgcctatttactc 32391024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 6733138 - 6733016
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    ||||||||||| || ||||||||||||||||  |||||||| |||       |||||||  ||||| |||||||| ||||||||||||| || ||||| |    
T  6733138 acaaacggaggaggataattgactaacgtttaacaatttcatgggagtttttgaagttttttaaaagtcaggggg-tttttgacgaaagttataatttta 6733040  T
Q  101 gggaggtttttgcttatttactcc 124  Q
     |||||||||||| |||| |||||    
T  6733039 tggaggtttttgcctattcactcc 6733016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 36067362 - 36067296
Alignment:
Q  57 tttcctaaaaatcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactc 123  Q
    |||| ||||||||||||||  |||||||||||| ||||||||||||  ||||||||| |||| ||||    
T  36067362 tttcttaaaaatcaggggggattttgacgaaagttacaatttcaggagggtttttgcctattcactc 36067296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 6733203 - 6733272
Alignment:
Q  54 aagtttcctaaaaatcagggggatttttgacgaaagctacaatttcagggaggtttttgcttatttactc 123  Q
    ||||||| ||||||||||||   ||||||||||||| ||||||||||| ||| ||||||| |||| ||||    
T  6733203 aagtttcttaaaaatcagggttttttttgacgaaagttacaatttcagagagatttttgcctattcactc 6733272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 31285589 - 31285490
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       ||  |||   |||| |||||||| ||||||||||||| |||||||||||||    
T  31285589 aacggaggggggtaattgacagacgcttgacaatttcaggggggtttttgacattttgcaaaattcaggggggtttttgacgaaagttacaatttcaggg 31285490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 29721078 - 29721119
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcagggg 45  Q
    |||||||||||||||||||| |||| ||| ||||||||||||    
T  29721078 aacggaggggggtaattgacaaacgcttgacaatttcagggg 29721119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 31286920 - 31286960
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    |||| |||||||| ||||||||||||| |||||||||||||    
T  31286920 aaaattcaggggggtttttgacgaaagttacaatttcaggg 31286960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 4593417 - 4593518
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  4593417 acaaacggagggggataattgactgacgtttgtcaatttcagggggttttttgaagtttcctaaaaatcaggggg-tttttgacgaaagctacattttca 4593515  T
Q  101 ggg 103  Q
    |||    
T  4593516 ggg 4593518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 4592750 - 4592627
Alignment:
Q  1 acaaacgga-ggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc 99  Q
    ||||||||| |||||||||||||||||||||||  ||||||| |||       |||||||| |||||||||||||| ||||||||||||| |||||||||    
T  4592750 acaaacggaaggggggtaattgactaacgtttgataatttcatgggggtttttgaagtttcttaaaaatcaggggggtttttgacgaaagttacaatttc 4592651  T
Q  100 agggaggtttttgcttatttactc 123  Q
    |||| ||||||||| |||| ||||    
T  4592650 aggggggtttttgcctattcactc 4592627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 10256503 - 10256601
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttca 100  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||       ||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  10256503 acaaacggagcggggtaattgactaacgtttggcaatttcagggggttttt-gaagtttcctagaaatcaggggggtttttgacgaaagctacaatttca 10256601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 45114913 - 45115006
Alignment:
Q  8 gaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcag 101  Q
    ||||||||||||| ||||||||||| |||||||| | |       |||||||| ||||| ||| |||| ||||||||||||| |||||||||||    
T  45114913 gaggggggtaattaactaacgtttgacaatttcatgaggggttttgaagtttcttaaaagtcaagggggtttttgacgaaagttacaatttcag 45115006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 22539136 - 22539226
Alignment:
Q  12 ggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||| |||||||| |||       |||||||  ||||| |||||||| || |||||||||| |||||||||||||    
T  22539136 ggggtaattgactaacgtttgacaatttcatggggttttttgaagttttttaaaagtcaggggg-ttcttgacgaaagttacaatttcaggg 22539226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 39618146 - 39618048
Alignment:
Q  4 aacggaggggggtaattgactaacgtttgtcaatttcaggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttcaggg 103  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||       |||||||   |||| | |||||| |||||||||||||||||||||||||||    
T  39618146 aacggaggggggtaattgacagacgcttgacaatttcagggggtattt-gaagttttgcaaaatttagggggttttttgacgaaagctacaatttcaggg 39618048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 39619328 - 39619367
Alignment:
Q  63 aaaaatcagggggatttttgacgaaagctacaatttcagg 102  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  39619328 aaaattcaggggggtttttgacgaaagctacaatttcagg 39619367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10255791 - 10255751
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttca 41  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  10255791 acaaacggaggggggtaattgactgacgtttgataatttca 10255751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 33157 - 33280
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttca-ggggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc 99  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||       ||||||||||||||||||||||  ||||| |||||||||||||||||    
T  33157 acaaacggaggggggtaattgactaacgtttgacaatttcaggggggtttttggaagtttcctaaaaatcaggggagttttttacgaaagctacaatttc 33256  T
Q  100 agggaggtttttgcttatttactc 123  Q
    | ||   ||||||| |||||||||    
T  33257 aaggttttttttgcctatttactc 33280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 32474 - 32351
Alignment:
Q  1 acaaacggaggggggtaattgactaacgtttgtcaatttcag-gggnnnnnnngaagtttcctaaaaatcagggggatttttgacgaaagctacaatttc 99  Q
    |||||||||| ||||| |||||||||||||||  |||||| | |||       |||||||| |||||||||| ||||||||||||||||| |||||||||    
T  32474 acaaacggagaggggttattgactaacgtttgataatttccgagggggtttttgaagtttcttaaaaatcagagggatttttgacgaaagttacaatttc 32375  T
Q  100 agggaggtttttgcttatttactc 123  Q
    |||  ||||||||| |||| ||||    
T  32374 aggagggtttttgcctattcactc 32351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2065 - 2025
Alignment:
Q  5 acggaggggggtaattgactaacgtttgtcaatttcagggg 45  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  2065 acggaggggggtaattgactaacgtttaacaatttcagggg 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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