View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7691_low_2 (Length: 591)
Name: NF7691_low_2
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 45696964 - 45696498
Alignment:
| Q |
18 |
aagaaacagtaaaagcaacacaatactgatcaatataaagacgagattgaaggtgactttgatcaagcctgattctaaagatctgagcattgttttcgtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45696964 |
aagaaacagtaaaagcaacacaatactgatcaatataaagacgagattgaaggtgactttgatcaagcctgattctaaagatctgagcattgttttcgtc |
45696865 |
T |
|
| Q |
118 |
gaaatcgggtttttcctttgacttgttcctctttcggagctcggtggtggttccgtcggtgccggggcggcgaatggcggctttgaggccattggattgg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45696864 |
gaaatcgggtttttcctttgacttgttcctctttcggagctcggtggtggttccgtcggtgccggggcggcgaatggcggctttgaggccattggattgg |
45696765 |
T |
|
| Q |
218 |
ggttgagaatcggggtggatgtaggtttgaagagcgtagaggaagaggattgggattctgaagaaggatagggttaaagcgaggattatggagagtgatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45696764 |
ggttgagaatcggggtggatgtaggtttgaagagcgtagagaaagaggattgggattctgaagaaggatagggttaaagcgaggattatggagagtgatg |
45696665 |
T |
|
| Q |
318 |
cgtggagtaatgggttcttgtagaatagaacgaactcaagcattgtgattgctcttttgttttgttttgttgttaacagaggtggtgaaatggcgttact |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
45696664 |
cgtggagtaatgggttcttgtagaatagaacgaactcaagcattgtgactgctcttttgttt-----tgttgttaacagagctggtgaaatggcgttact |
45696570 |
T |
|
| Q |
418 |
tggaggctttgttatttatatgaagacaagtgtgcttagttaataggagtattgtctcatattattggtctt |
489 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45696569 |
tggaggctttgttacttatatgaagacaagtgtgcttagttaataggagtattgtctcatattattggtctt |
45696498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 448 - 580
Target Start/End: Complemental strand, 45696498 - 45696369
Alignment:
| Q |
448 |
tgtgcttagttaataggagtattgtctcatattattggtcttattcgtttgtgcgatcgtgaacttaatttattgtaaggtttggagtttgaatcccgac |
547 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| |||||||||||| | ||| | || |||||||||||||| |
|
|
| T |
45696498 |
tgtgcttagttaataagagtattgtctcatattattggtcttgttcggttgtgcggtcgtgaacttaact-----caagatctgctgtttgaatcccgac |
45696404 |
T |
|
| Q |
548 |
aatcaccaaaaaaggtcttattc--ttgtcttctt |
580 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| |
|
|
| T |
45696403 |
aaccaccaaaaaaggtcttattcgtttgtcttctt |
45696369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 524 - 560
Target Start/End: Original strand, 27674378 - 27674414
Alignment:
| Q |
524 |
aaggtttggagtttgaatcccgacaatcaccaaaaaa |
560 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
27674378 |
aaggtttggtgtttgaatcccgaccatcaccaaaaaa |
27674414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University