View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_low_24 (Length: 259)
Name: NF7691_low_24
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 37961209 - 37960984
Alignment:
| Q |
18 |
cttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgt |
117 |
Q |
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| T |
37961209 |
cttgttccaaatttacctccacctcgtaccgaacaagacaacactcgcatcatccctataatggctattcaagtcaccgttcttccaaactccggcttgt |
37961110 |
T |
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| Q |
118 |
ctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttcaccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaa |
217 |
Q |
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| T |
37961109 |
ctatttgcctaagttacaaccatgttgctgcagacggaaaatcacttcaccatttcgtgaaattttgggcctctctttcaaaagccatagcaaaaaacaa |
37961010 |
T |
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| Q |
218 |
caataatttgtctctcgaatactctc |
243 |
Q |
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| T |
37961009 |
caataatttgtctcttgaatactctc |
37960984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 37906862 - 37907073
Alignment:
| Q |
21 |
gttccaaatttacctccacctcgtaccgaacaagacaacactcgcgtcatccctataatggctattcaagtcaccgttcttccaaactccggcttgtcta |
120 |
Q |
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| T |
37906862 |
gttccaaatttacctccacctcgtaccgaacaagacaacattcgtgttatccctataatgtctattccagtcactgttcttccaaactccgggttctcta |
37906961 |
T |
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| Q |
121 |
tttgcctaagttacaaccatgttgctgcagacggaaaatc--acttcaccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaac |
218 |
Q |
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| T |
37906962 |
tttgcctcagttacaaccatgttgctgcatacggaaaatcgtacttcatcatttcatgaaattttgggcttctctttcaaaagccatagcaaaaaataac |
37907061 |
T |
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| Q |
219 |
aataatttgtct |
230 |
Q |
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| T |
37907062 |
aataatttgtct |
37907073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 37915145 - 37915222
Alignment:
| Q |
141 |
gttgctgcagacggaaaatcacttcaccatttcatgaaattttgggcctctctttcaaaagccatagcaaaaaacaac |
218 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||| | | |||| ||||| ||| |||| |||||| |
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| T |
37915145 |
gttgttgcagacggaaaatcacttcatcatttcatgaaattttgggcatttgtttccaaagctataacaaacaacaac |
37915222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 37915022 - 37915057
Alignment:
| Q |
18 |
cttgttccaaatttacctccacctcgtaccgaacaa |
53 |
Q |
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| T |
37915022 |
cttgttccaaatttacctccacctcgtactgaacaa |
37915057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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