View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7691_low_25 (Length: 258)

Name: NF7691_low_25
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7691_low_25
NF7691_low_25
[»] chr8 (1 HSPs)
chr8 (1-237)||(4190173-4190407)
[»] chr2 (1 HSPs)
chr2 (95-237)||(43585120-43585262)
[»] chr4 (1 HSPs)
chr4 (167-234)||(23339461-23339528)
[»] chr1 (1 HSPs)
chr1 (176-234)||(52103072-52103130)
[»] chr7 (1 HSPs)
chr7 (176-237)||(41418460-41418521)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4190407 - 4190173
Alignment:
Q  1 atttcaattctagaagtgaataacnnnnnnncaatgaaaataagagtgtttaattttcattttgattaacaaagattattgttctttgacttaatttgca 100  Q
    ||||||||||||| ||| ||||||       |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190407 atttcaattctagcagtaaataacacaaaaacaatgaaaataag--tgtttaattttcattttgattaacaaagattattgttctttgacttaatttgca 4190310  T
Q  101 ggtaagttgacatcagatgcagctcttgatccagcagggttactagcagttgctgtttgccatggttttgcactttttgttgctgttgcagttggtgcca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4190309 ggtaagttgacatcagatgcagctcttgatccagcagggttactagcagttgctgtttgccatggttttgcactttttgttgctgttgcagttggtgcca 4190210  T
Q  201 acatttctggtggtcatgtcaaccctgctgtcacctt 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  4190209 acatttctggtggtcatgtcaaccctgctgtcacctt 4190173  T

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Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 43585120 - 43585262
Alignment:
Q  95 tttgcaggtaagttgacatcagatgcagctcttgatccagcagggttactagcagttgctgtttgccatggttttgcactttttgttgctgttgcagttg 194  Q
    ||||||| |||||||||||||| ||||||||||||||| || || ||| |||||||||||||||| ||||||||||| ||||||||||||||| | ||||    
T  43585120 tttgcagctaagttgacatcaggtgcagctcttgatcctgctggattagtagcagttgctgtttgtcatggttttgctctttttgttgctgtttctgttg 43585219  T
Q  195 gtgccaacatttctggtggtcatgtcaaccctgctgtcacctt 237  Q
    | |||||||| |||||||| ||||||||||| ||||| |||||    
T  43585220 gagccaacatatctggtggacatgtcaacccagctgtgacctt 43585262  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 23339461 - 23339528
Alignment:
Q  167 tttgcactttttgttgctgttgcagttggtgccaacatttctggtggtcatgtcaaccctgctgtcac 234  Q
    ||||||||||||||||||||  | |||||||| |||||||||||||| ||||||||||||||||||||    
T  23339461 tttgcactttttgttgctgtctctgttggtgctaacatttctggtggacatgtcaaccctgctgtcac 23339528  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 52103130 - 52103072
Alignment:
Q  176 tttgttgctgttgcagttggtgccaacatttctggtggtcatgtcaaccctgctgtcac 234  Q
    ||||| |||||| | |||||||| |||||||||||||| ||||| |||||||| |||||    
T  52103130 tttgtggctgtttctgttggtgcaaacatttctggtggacatgtgaaccctgcagtcac 52103072  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 41418521 - 41418460
Alignment:
Q  176 tttgttgctgttgcagttggtgccaacatttctggtggtcatgtcaaccctgctgtcacctt 237  Q
    |||||||||||  | |||||||| ||||| || ||||| ||||||||||| |||||||||||    
T  41418521 tttgttgctgtctccgttggtgctaacatctccggtggacatgtcaaccccgctgtcacctt 41418460  T

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