View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_low_26 (Length: 255)
Name: NF7691_low_26
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 12199270 - 12199418
Alignment:
| Q |
12 |
cagagaagaaaggaattatgcagataaattgatgatgataaaaggaatgttctaacaaccttaggccacaccagcaaccatagcagaatgcatgtaaaag |
111 |
Q |
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| T |
12199270 |
cagagaagaaaggaattatgcagataaattgatgatgataaaaggaatgttctaacaaccttaggccacaccagcaaccatagcagaatgcatgtaaaag |
12199369 |
T |
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| Q |
112 |
taattatccaagaagaggaaaaaagtgagtgatataatattatccaaaa |
160 |
Q |
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| T |
12199370 |
taattatccaaaaaggggaagaaagtgagtgatacaatattatccaaaa |
12199418 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 36319349 - 36319316
Alignment:
| Q |
13 |
agagaagaaaggaattatgcagataaattgatga |
46 |
Q |
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| T |
36319349 |
agagaagaaaggaattatgcagataaattgatga |
36319316 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 24734272 - 24734180
Alignment:
| Q |
15 |
agaagaaaggaattatgcagataaattgatgatgataaaaggaatgttctaacaacct-taggccacaccagcaaccatagcagaatgcatgt |
106 |
Q |
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| T |
24734272 |
agaagaaagtaattatgcagtgaatttgacgatgataaaaggaatattacaacagcatataggctaaaccagcaaccataacagaatacatgt |
24734180 |
T |
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