View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_low_27 (Length: 253)
Name: NF7691_low_27
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 39863714 - 39863846
Alignment:
| Q |
102 |
cacagaaaatcaacttaccagcatcatttgaggcccacctgaaggaggaggcataccaaggatctttaatccaagaaaatctatagatataggttccttt |
201 |
Q |
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| T |
39863714 |
cacagcaaatcaacttaccagcatcatttgaggcccacctgaaggaggaggcataccaaggatctttaatccaagaaaatctatagatataggttccttt |
39863813 |
T |
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| Q |
202 |
tatttaacagtgtactttttgaggtcttccaat |
234 |
Q |
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| T |
39863814 |
tgtttaacagtgtactttttgaggtcttccaat |
39863846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 108 - 232
Target Start/End: Original strand, 27115004 - 27115128
Alignment:
| Q |
108 |
aaatcaacttaccagcatcatttgaggcccacctgaaggaggaggcataccaaggatctttaatccaagaaaatctatagatataggttccttttattta |
207 |
Q |
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| T |
27115004 |
aaatcaacttaccagcatcattgcaggtccacctgaaggaggaggcatactaaggagttttaatccaagaaaatctatagatataggttcctttggttta |
27115103 |
T |
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| Q |
208 |
acagtgtactttttgaggtcttcca |
232 |
Q |
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| T |
27115104 |
acagtgtatcttttgaggtcttcca |
27115128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 10560222 - 10560175
Alignment:
| Q |
44 |
cccgtacattccacgaaattatcttcatcaccacaccctctccctcac |
91 |
Q |
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| T |
10560222 |
cccgcacattccacgaaattatcttcatcaccacaccctcaccctcac |
10560175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 20398810 - 20398857
Alignment:
| Q |
44 |
cccgtacattccacgaaattatcttcatcaccacaccctctccctcac |
91 |
Q |
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| T |
20398810 |
cccgcacattccatgaaataatcttcatcaccacaccctcaccctcac |
20398857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 10708470 - 10708426
Alignment:
| Q |
44 |
cccgtacattccacgaaattatcttcatcaccacaccctctccct |
88 |
Q |
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| T |
10708470 |
cccgcacattccatgaaattatcttcatcaccacaccctcaccct |
10708426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 88
Target Start/End: Original strand, 26741318 - 26741362
Alignment:
| Q |
44 |
cccgtacattccacgaaattatcttcatcaccacaccctctccct |
88 |
Q |
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| T |
26741318 |
cccgcacattccacgaaataatcttcatcaccacaccctcaccct |
26741362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 17662087 - 17662134
Alignment:
| Q |
44 |
cccgtacattccacgaaattatcttcatcaccacaccctctccctcac |
91 |
Q |
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|||| |||||||| ||||| |||||||||||||||||||| ||||||| |
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| T |
17662087 |
cccgcacattccatgaaataatcttcatcaccacaccctcaccctcac |
17662134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 17075962 - 17075918
Alignment:
| Q |
44 |
cccgtacattccacgaaattatcttcatcaccacaccctctccct |
88 |
Q |
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| T |
17075962 |
cccgcacattccaagaaattatcttcatcaccacactctcaccct |
17075918 |
T |
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