View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7691_low_3 (Length: 582)
Name: NF7691_low_3
Description: NF7691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7691_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 37832298 - 37832845
Alignment:
| Q |
18 |
cttcactggtttgggtactaaaatcaaccagggctagctccatatttcttttatgtaaaatatatcaccctttattccaatcccaatagcacgcataatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832298 |
cttcactggtttgggtactaaaatcaaccagggctagctccatatttcttttatgtaaaatatatcaccctttattccaatcccaatagcacgcataatg |
37832397 |
T |
|
| Q |
118 |
cgagttgaaggtctcctccgtatgttgagccaaattaaccctaaagtgtttgaacattcaattcaatacatcgcaacagatagcagattacaacgactat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832398 |
cgagttgaaggtctcctccgtatgttgagccaaattaaccctaaagtgtttgaacattcaattcaatacatcgcaacagatagcagattacaacgactat |
37832497 |
T |
|
| Q |
218 |
cactaacaaaattagctgcactgacaccgtatgctaagaaaagaacccaaaatttgctacgtacaaaattctgcaggtccacatcatttagatgaaaact |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832498 |
cactaacaaaattagctgcactgacaccgtatgctaagaaaagaacccaaaatttgctacgtacaaaattctgcaggtccacatcatttagatgaaaact |
37832597 |
T |
|
| Q |
318 |
acaagacctacacagagcctgtcaagctaccaaaaagctagatcagcgctaatacacacatcctaccataagactcacaaattttccacctgaacccaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832598 |
acaagacctacacagagcctgtcaagctaccaaaaagctagatcagcgctaatacacacatcctaccataagactcacaaattttccacctgaacccaaa |
37832697 |
T |
|
| Q |
418 |
caatacaggcacaattccaaaggactccaatctaaaataaaatgcacaccaaagctcaatgaaacttaattggagttttcctttgaataaagccactctc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832698 |
caatacaggcacaattccaaaggactccaatctaaaataaaatgcacaccaaaactcaatgaaacttaattggagttttcctttgaataaagccactctc |
37832797 |
T |
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| Q |
518 |
aaaaactcaaatgctgctaacgacaatcttaaagcatacttataaaaa |
565 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
37832798 |
aaaaactcaaattctgctaacaacaatcttaaagcatacttataaaaa |
37832845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 37830999 - 37830885
Alignment:
| Q |
18 |
cttcactggtttgggtactaaaatcaaccagggctagctccatattt-cttttatgtaaaatatatcaccctttattccaatcccaatagcacgcataat |
116 |
Q |
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||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||| |
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| T |
37830999 |
cttcactagtttgggtacttaaatcaatcagggctagctccatattttcttttatgtagaatatagcactctttattccaatcccaatagcacgcataat |
37830900 |
T |
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| Q |
117 |
gcgagttgaaggtct |
131 |
Q |
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| ||||||||||||| |
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| T |
37830899 |
gtgagttgaaggtct |
37830885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 22535095 - 22535207
Alignment:
| Q |
18 |
cttcactggtttgggtactaaaatcaaccagggctagctccatatttctttt-atgtaaaatatatcaccctttattccaatcccaatagcacgcataat |
116 |
Q |
| |
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||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| ||||| |
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| T |
22535095 |
cttcactagtttgggtacttaaatcaatcagggctagctccatatttctttttatgtacaatataccactctttattccaatcccaatagcacaaataat |
22535194 |
T |
|
| Q |
117 |
gcgagttgaaggt |
129 |
Q |
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||||||||||||| |
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|
| T |
22535195 |
gcgagttgaaggt |
22535207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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